Rroxscaffold_1G00047810

ribosomal protein L11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0014127
Physical Location & Seq
Forward (+)
67653850 .. 67656781
2932 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00047810.1

Sequence Viewer

Length: 1302 bp
ATGTCAGGCCGTCCTTTGCTCAAACTCCTTGCCTCCACTCTGCTCCCCTCTCGAGCTTTCACTCTCAGTCGCCCATTTCCCTCTCGCTTCTTCACTACCCGGAAGCCCAGATACCTCTCGTGGCCCAATTCACTAGCTGCTGCAAACATCTCCGCTTCTTCTTCAGAGACTCCCTCTGCCCAGCCCTTTGCTTTGCCTTTCCAATCTGTCAACATTCGCTGCCAAAGACATGTCTCTGTGAGCTTCTTTACCTTCTCTTTTTTGTTGAACTTTTGCTTTTCAGTTGAATATTTGGACTGGGTTTATGCTCATGATATGCTTCAAGAAGCTCTGTTATGCTTTGGTGCAAGTTCTACTAGTGTTGATGAAGACGATGACTGTGAGGATTCCGACGAGATTTGCATTACTTCCATATTTCCTGAAGGTGAAGATGTAAATACTTGCATTTCCTGTGCTGCTGATTCCATAAGCTTGAAAGAGATACCTAGTTATGAAGTTGCGATAGGTGAGCAGTACGACTGGATAAGGAAAACTCAGGAATCATTTCATCCTGTTGAAATTACTGAAGGACTCTGGATTGTGCCCGCCTGGAAAACTCCCCTAGCATCCTACTACAAGGTTATGTCTGTTGCTGCTTCATGGCTTGATAAAGGGGGAGAACAATTCTTGGACTATGGCACAGGTTCTGGAATTCTTGCAATTGCTGCAGTTAAGTTTGGTGCTGCCTTATCAGTCGGAATTGATATAGATCCACAAGCAATTACATCTGCACACCAGAATGCTAATCTGAACAACATAGGACCTGAACAAATGCAATTATATCTAGTTCCGAGTGAAAATTGCTCAACTAAGACAGATCCGTGTGGAAATGTGGAAGAGCAGAGCGCATTTGTAGCGGAAGCCATCTCAGAAACAGACAAGTACGATGTACTAATTGCAAATATACTTTTAAATCCCCTAATGGATTTGGCAGATCAGATCGTCTCTTATGCAAAGCCTGGGGCAGTTATCGGTCTCTCCGGGATTCTCTCTGATCAGAGCGATATTCACAGTTCTTGGAAGGTGTATCGACTACAGAGATGGATGGTTGGGCCTGTGTCCATGGCAGAAAGAAGCAAAATGTTGCTGGCAACTGAGGAATCTCTCCCGTCTAAACCATCAGTGGAAGTACAATGTGACCAAACTGTTCCGACAGTTTTGCCGATCAGAGATGCTATTCTATATGAGGCTGTATGGTCTGGTCACTTTTACATCATACGTGCTGGCTGGCTTAACAATCCAAACAGGAGCATGGACATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PrmA

Protein Analysis

433

Amino Acids

47.81

Weight (kDa)

4.6

Isoelectric Point (pI)

50.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PrmA PF06325 108 - 201 6e-10 Ribosomal protein L11 methyltransferase (PrmA)
PrmA PF06325 215 - 348 4.8e-31 Ribosomal protein L11 methyltransferase (PrmA)
Methyltransf_23 PF13489 216 - 347 4.6e-06 Methyltransferase domain
Methyltransf_31 PF13847 217 - 267 5.5e-06 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014127)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53920
fragaria_vesca FvH4_3g19490
malus_domestica MD11G1252500.v1.1
prunus_persica Prupe.4G176500_v2.0.a1 Prupe.4G176500_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0032751
rosa_laevigata RLG00000033424
rosa_multiflora Rmu_sc0027546.1_g000001 Rmu_ssc0000293.1_g000003
rosa_roxburghii Rroxscaffold_1G00047350 Rroxscaffold_1G00047810
rosa_rugosa Rorug05G0133500
rosa_samantha Rh5AG226200 Rh5BG227300 Rh5CG255100 Rh5DG232000
rosa_wichuraiana Rw5G020740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 153, 585, 896
AclWI GGATC 2 cut(s) 743, 851
AcsI RAATTY 1 cut(s) 690
AcuI CTGAAG 3 cut(s) 147, 441, 585
AfaI GTAC 4 cut(s) 515, 923, 930, 1170
AflIII ACRYGT 1 cut(s) 229
AgsI TTSAA 5 cut(s) 268, 287, 323, 475, 557
AhlI ACTAGT 1 cut(s) 356
AjnI CCWGG 2 cut(s) 587, 997
AluBI AGCT 5 cut(s) 56, 137, 243, 329, 471
AluI AGCT 5 cut(s) 56, 137, 243, 329, 471
Alw26I GTCTC 4 cut(s) 161, 238, 988, 1019
AlwI GGATC 2 cut(s) 743, 851
AlwNI CAGNNNCTG 1 cut(s) 686
Ama87I CYCGRG 1 cut(s) 51
AoxI GGCC 3 cut(s) 7, 122, 1091
ApeKI GCWGC 7 cut(s) 137, 140, 219, 455, 632, 704, 722
ApoI RAATTY 1 cut(s) 690
Asp700I GAANNNNTTC 1 cut(s) 543
AspLEI GCGC 1 cut(s) 887
AspS9I GGNCC 3 cut(s) 123, 800, 1091
AsuC2I CCSGG 2 cut(s) 100, 1021
AsuHPI GGTGA 2 cut(s) 437, 518
AvaI CYCGRG 1 cut(s) 51
AvaII GGWCC 1 cut(s) 800
BaeGI GKGCMC 1 cut(s) 585
BarI GAAGNNNNNNTAC 2 cut(s) 95, 127
BauI CACGAG 1 cut(s) 118
BbsI GAAGAC 1 cut(s) 375
BbvI GCAGC 7 cut(s) 124, 127, 206, 442, 619, 691, 709
BccI CCATC 4 cut(s) 911, 1074, 1078, 1165
BcgI CGANNNNNNTGC 2 cut(s) 1180, 1214
BciT130I CCWGG 2 cut(s) 589, 999
BclI TGATCA 1 cut(s) 1033
BcnI CCSGG 2 cut(s) 100, 1021
BcoDI GTCTC 4 cut(s) 161, 238, 988, 1019
BcuI ACTAGT 1 cut(s) 356
BfaI CTAG 5 cut(s) 134, 357, 486, 602, 824
BfmI CTRYAG 2 cut(s) 705, 1073
BisI GCNGC 7 cut(s) 138, 141, 220, 456, 633, 705, 723
BlsI GCNGC 7 cut(s) 139, 142, 221, 457, 634, 706, 724
Bme1390I CCNGG 4 cut(s) 100, 589, 999, 1021
Bme18I GGWCC 1 cut(s) 800
BmeT110I CYCGRG 1 cut(s) 51
BmgT120I GGNCC 3 cut(s) 123, 800, 1091
BmrFI CCNGG 4 cut(s) 100, 589, 999, 1021
BmrI ACTGGG 1 cut(s) 307
BmsI GCATC 2 cut(s) 614, 1201
BmuI ACTGGG 1 cut(s) 307
BpiI GAAGAC 1 cut(s) 375
BplI GAGNNNNNCTC 2 cut(s) 158, 190
BpuMI CCSGG 2 cut(s) 100, 1021
BsaAI YACGTR 1 cut(s) 1259
BsaBI GATNNNNATC 1 cut(s) 747
BsaI GGTCTC 1 cut(s) 1019
BsaJI CCNNGG 2 cut(s) 998, 1101
Bse1I ACTGG 2 cut(s) 302, 524
Bse8I GATNNNNATC 1 cut(s) 747
BseBI CCWGG 2 cut(s) 589, 999
BseDI CCNNGG 2 cut(s) 998, 1101
BseGI GGATG 3 cut(s) 547, 605, 1089
BseJI GATNNNNATC 1 cut(s) 747
BseMII CTCAG 4 cut(s) 79, 548, 921, 1125
BseNI ACTGG 2 cut(s) 302, 524
BseSI GKGCMC 1 cut(s) 585
BseXI GCAGC 7 cut(s) 124, 127, 206, 442, 619, 691, 709
BseYI CCCAGC 1 cut(s) 180
BsgI GTGCAG 1 cut(s) 753
BshFI GGCC 3 cut(s) 9, 124, 1093
BsiHKCI CYCGRG 1 cut(s) 51
BsiSI CCGG 2 cut(s) 100, 1020
BsmAI GTCTC 4 cut(s) 161, 238, 988, 1019
BsmBI CGTCTC 1 cut(s) 988
BsmI GAATGC 1 cut(s) 784
BsnI GGCC 3 cut(s) 9, 124, 1093
Bso31I GGTCTC 1 cut(s) 1019
BsoBI CYCGRG 1 cut(s) 51
Bsp1286I GDGCHC 1 cut(s) 585
Bsp143I GATC 6 cut(s) 748, 856, 973, 978, 1033, 1203
Bsp19I CCATGG 1 cut(s) 1101
BspACI CCGC 3 cut(s) 153, 585, 896
BspANI GGCC 3 cut(s) 9, 124, 1093
BspCNI CTCAG 4 cut(s) 78, 547, 920, 1126
BspHI TCATGA 1 cut(s) 310
BspMAI CTGCAG 1 cut(s) 709
BspPI GGATC 2 cut(s) 743, 851
BspQI GCTCTTC 1 cut(s) 870
BspTNI GGTCTC 1 cut(s) 1019
BsrI ACTGG 2 cut(s) 302, 524
BssECI CCNNGG 2 cut(s) 998, 1101
BssMI GATC 6 cut(s) 748, 856, 973, 978, 1033, 1203
BssSI CACGAG 1 cut(s) 118
BssT1I CCWWGG 1 cut(s) 1101
Bst2BI CACGAG 1 cut(s) 118
Bst2UI CCWGG 2 cut(s) 589, 999
Bst4CI ACNGT 4 cut(s) 380, 1052, 1186, 1195
Bst6I CTCTTC 1 cut(s) 870
BstAPI GCANNNNNTGC 1 cut(s) 704
BstBAI YACGTR 1 cut(s) 1259
BstC8I GCNNGC 4 cut(s) 585, 1128, 1264, 1268
BstDEI CTNAG 5 cut(s) 65, 534, 849, 907, 1134
BstDSI CCRYGG 1 cut(s) 1101
BstF5I GGATG 3 cut(s) 547, 605, 1089
BstHHI GCGC 1 cut(s) 887
BstKTI GATC 6 cut(s) 751, 859, 976, 981, 1036, 1206
BstMAI GTCTC 4 cut(s) 161, 238, 988, 1019
BstMBI GATC 6 cut(s) 748, 856, 973, 978, 1033, 1203
BstMWI GCNNNNNNNGC 2 cut(s) 704, 893
BstNI CCWGG 2 cut(s) 589, 999
BstNSI RCATGY 1 cut(s) 233
BstSCI CCNGG 4 cut(s) 98, 587, 997, 1019
BstSFI CTRYAG 2 cut(s) 705, 1073
BstSLI GKGCMC 1 cut(s) 585
BstV1I GCAGC 7 cut(s) 124, 127, 206, 442, 619, 691, 709
BstV2I GAAGAC 1 cut(s) 375
BstX2I RGATCY 2 cut(s) 748, 856
BstYI RGATCY 2 cut(s) 748, 856
BsuRI GGCC 3 cut(s) 9, 124, 1093
BtgI CCRYGG 1 cut(s) 1101
BtsCI GGATG 3 cut(s) 547, 605, 1089
BtsIMutI CAGTG 1 cut(s) 1167
Cac8I GCNNGC 4 cut(s) 585, 1128, 1264, 1268
CaiI CAGNNNCTG 1 cut(s) 686
CciI TCATGA 1 cut(s) 310
CfoI GCGC 1 cut(s) 887
Cfr13I GGNCC 3 cut(s) 123, 800, 1091
Csp6I GTAC 4 cut(s) 514, 922, 929, 1169
CviAII CATG 5 cut(s) 230, 311, 639, 1102, 1291
CviQI GTAC 4 cut(s) 514, 922, 929, 1169
DdeI CTNAG 5 cut(s) 65, 534, 849, 907, 1134
DpnI GATC 6 cut(s) 750, 858, 975, 980, 1035, 1205
DpnII GATC 6 cut(s) 748, 856, 973, 978, 1033, 1203
DraI TTTAAA 1 cut(s) 951
Eam1104I CTCTTC 1 cut(s) 870
EarI CTCTTC 1 cut(s) 870
Eco130I CCWWGG 1 cut(s) 1101
Eco31I GGTCTC 1 cut(s) 1019
Eco47I GGWCC 1 cut(s) 800
Eco57I CTGAAG 3 cut(s) 147, 441, 585
Eco88I CYCGRG 1 cut(s) 51
EcoO109I RGGNCCY 1 cut(s) 800
EcoRI GAATTC 1 cut(s) 690
EcoRII CCWGG 2 cut(s) 587, 997
EcoT14I CCWWGG 1 cut(s) 1101
ErhI CCWWGG 1 cut(s) 1101
Esp3I CGTCTC 1 cut(s) 988
FaeI CATG 5 cut(s) 233, 314, 642, 1105, 1294
FatI CATG 5 cut(s) 229, 310, 638, 1101, 1290
FauI CCCGC 1 cut(s) 592
FbaI TGATCA 1 cut(s) 1033
Fnu4HI GCNGC 7 cut(s) 138, 141, 220, 456, 633, 705, 723
FokI GGATG 3 cut(s) 534, 592, 1096
Fsp4HI GCNGC 7 cut(s) 138, 141, 220, 456, 633, 705, 723
FspBI CTAG 5 cut(s) 134, 357, 486, 602, 824
GlaI GCGC 1 cut(s) 886
GluI GCNGC 7 cut(s) 138, 141, 220, 456, 633, 705, 723
GsaI CCCAGC 1 cut(s) 184
HaeIII GGCC 3 cut(s) 9, 124, 1093
HapII CCGG 2 cut(s) 100, 1020
HhaI GCGC 1 cut(s) 887
Hin1II CATG 5 cut(s) 233, 314, 642, 1105, 1294
Hin6I GCGC 1 cut(s) 885
HinP1I GCGC 1 cut(s) 885
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HindIII AAGCTT 1 cut(s) 469
HinfI GANTC 7 cut(s) 169, 386, 461, 539, 570, 1024, 1139
HpaII CCGG 2 cut(s) 100, 1020
HphI GGTGA 2 cut(s) 437, 518
Hpy166II GTNNAC 1 cut(s) 211
Hpy188III TCNNGA 7 cut(s) 51, 311, 323, 419, 536, 574, 687
Hpy8I GTNNAC 1 cut(s) 211
Hpy99I CGWCG 1 cut(s) 395
HpyAV CCTTC 4 cut(s) 262, 416, 560, 1054
HpyCH4III ACNGT 4 cut(s) 380, 1052, 1186, 1195
HpyCH4IV ACGT 1 cut(s) 1258
HpyF10VI GCNNNNNNNGC 2 cut(s) 704, 893
HpyF3I CTNAG 5 cut(s) 65, 534, 849, 907, 1134
HpySE526I ACGT 1 cut(s) 1258
Hsp92II CATG 5 cut(s) 233, 314, 642, 1105, 1294
HspAI GCGC 1 cut(s) 885
Ksp22I TGATCA 1 cut(s) 1033
Kzo9I GATC 6 cut(s) 748, 856, 973, 978, 1033, 1203
LguI GCTCTTC 1 cut(s) 870
LmnI GCTCC 2 cut(s) 48, 1287
Lsp1109I GCAGC 7 cut(s) 124, 127, 206, 442, 619, 691, 709
LweI GCATC 2 cut(s) 614, 1201
MaeI CTAG 5 cut(s) 134, 357, 486, 602, 824
MaeII ACGT 1 cut(s) 1258
MaeIII GTNAC 2 cut(s) 1175, 1241
MalI GATC 6 cut(s) 750, 858, 975, 980, 1035, 1205
MboI GATC 6 cut(s) 748, 856, 973, 978, 1033, 1203
MboII GAAGA 6 cut(s) 82, 150, 153, 380, 440, 887
MfeI CAATTG 1 cut(s) 699
MflI RGATCY 2 cut(s) 748, 856
MhlI GDGCHC 1 cut(s) 585
MlyI GAGTC 2 cut(s) 163, 564
MmeI TCCRAC 3 cut(s) 414, 715, 1214
MnlI CCTC 8 cut(s) 43, 58, 91, 125, 184, 376, 1129, 1219
MroXI GAANNNNTTC 1 cut(s) 543
MseI TTAA 3 cut(s) 711, 950, 1272
MslI CAYNNNNRTG 1 cut(s) 777
MspI CCGG 2 cut(s) 100, 1020
MspR9I CCNGG 4 cut(s) 100, 589, 999, 1021
MunI CAATTG 1 cut(s) 699
Mva1269I GAATGC 1 cut(s) 784
MvaI CCWGG 2 cut(s) 589, 999
MwoI GCNNNNNNNGC 2 cut(s) 704, 893
NciI CCSGG 2 cut(s) 100, 1021
NcoI CCATGG 1 cut(s) 1101
NdeII GATC 6 cut(s) 748, 856, 973, 978, 1033, 1203
NlaIII CATG 5 cut(s) 233, 314, 642, 1105, 1294
NmuCI GTSAC 2 cut(s) 1175, 1241
NspI RCATGY 1 cut(s) 233
PaeR7I CTCGAG 1 cut(s) 51
PagI TCATGA 1 cut(s) 310
PciI ACATGT 1 cut(s) 229
PciSI GCTCTTC 1 cut(s) 870
PctI GAATGC 1 cut(s) 784
PdmI GAANNNNTTC 1 cut(s) 543
PfeI GAWTC 5 cut(s) 386, 461, 539, 1024, 1139
PfoI TCCNGGA 1 cut(s) 1019
PkrI GCNGC 7 cut(s) 139, 142, 221, 457, 634, 706, 724
PleI GAGTC 2 cut(s) 163, 564
PpsI GAGTC 2 cut(s) 163, 564
Ppu21I YACGTR 1 cut(s) 1259
PpuMI RGGWCCY 1 cut(s) 800
PscI ACATGT 1 cut(s) 229
Psp5II RGGWCCY 1 cut(s) 800
Psp6I CCWGG 2 cut(s) 587, 997
PspFI CCCAGC 1 cut(s) 180
PspGI CCWGG 2 cut(s) 587, 997
PspPI GGNCC 3 cut(s) 123, 800, 1091
PspPPI RGGWCCY 1 cut(s) 800
PstI CTGCAG 1 cut(s) 709
PstNI CAGNNNCTG 1 cut(s) 686
PsuI RGATCY 2 cut(s) 748, 856
RsaI GTAC 4 cut(s) 515, 923, 930, 1170
RsaNI GTAC 4 cut(s) 514, 922, 929, 1169
RseI CAYNNNNRTG 1 cut(s) 777
SapI GCTCTTC 1 cut(s) 870
SaqAI TTAA 3 cut(s) 711, 950, 1272
SatI GCNGC 7 cut(s) 138, 141, 220, 456, 633, 705, 723
Sau3AI GATC 6 cut(s) 748, 856, 973, 978, 1033, 1203
Sau96I GGNCC 3 cut(s) 123, 800, 1091
SchI GAGTC 2 cut(s) 163, 564
ScrFI CCNGG 4 cut(s) 100, 589, 999, 1021
SduI GDGCHC 1 cut(s) 585
SfaNI GCATC 2 cut(s) 614, 1201
SfcI CTRYAG 2 cut(s) 705, 1073
Sfr274I CTCGAG 1 cut(s) 51
SinI GGWCC 1 cut(s) 800
SlaI CTCGAG 1 cut(s) 51
SmiMI CAYNNNNRTG 1 cut(s) 777
SmlI CTYRAG 1 cut(s) 51
SmoI CTYRAG 1 cut(s) 51
SpeI ACTAGT 1 cut(s) 356
SsiI CCGC 3 cut(s) 153, 585, 896
SspI AATATT 1 cut(s) 290
SspMI CTAG 5 cut(s) 134, 357, 486, 602, 824
StyD4I CCNGG 4 cut(s) 98, 587, 997, 1019
StyI CCWWGG 1 cut(s) 1101
TaaI ACNGT 4 cut(s) 380, 1052, 1186, 1195
TaiI ACGT 1 cut(s) 1261
TaqI TCGA 2 cut(s) 52, 1069
TaqII GACCGA 1 cut(s) 1001
TatI WGTACW 2 cut(s) 928, 1168
TfiI GAWTC 5 cut(s) 386, 461, 539, 1024, 1139
Tru1I TTAA 3 cut(s) 711, 950, 1272
Tru9I TTAA 3 cut(s) 711, 950, 1272
TscAI CASTG 1 cut(s) 1167
TseFI GTSAC 2 cut(s) 1175, 1241
TseI GCWGC 7 cut(s) 137, 140, 219, 455, 632, 704, 722
Tsp45I GTSAC 2 cut(s) 1175, 1241
TspDTI ATGAA 4 cut(s) 381, 507, 536, 627
TspGWI ACGGA 1 cut(s) 849
TspRI CASTG 1 cut(s) 1167
VpaK11BI GGWCC 1 cut(s) 800
XapI RAATTY 1 cut(s) 690
XceI RCATGY 1 cut(s) 233
XhoI CTCGAG 1 cut(s) 51
XmnI GAANNNNTTC 1 cut(s) 543
XspI CTAG 5 cut(s) 134, 357, 486, 602, 824
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.