Prupe.4G176500_v2.0.a1

ribosomal protein L11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0014127
Physical Location & Seq
Reverse (-)
10450669 .. 10455032
4364 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G176500.1

Sequence Viewer

Length: 1146 bp
ATGTCAGGCGGTTTGCTCAAACAGCTTGCTTACACTCTCAGCTCTCGTTGCTTCGCCACCTTCTCTCGCCCTTCAACTCACCCATCGCCCTCTCGCTTCTTCACAAACCGCAAACTCAGAGAGCTCTCCCAACCCAATTCCCTAGCTGCAAAGTTTTCCACTTCTTCTCCGGAGACTCCCACTCCCTCGGCGGAGCCATTTGCTTCGCGTTTCCTTTCTGTCCAAATTCGCTGCCAAAAACATGTTGCTGATATGCTTTCAGAGGCTCTTTTATGCTTTGGTGCAAGTTCTACTAGTATCGACGAAGAAGATAACTATGACGGAAAGGACGAGATTTGCATCGATTCCATATTTCCTGTGGGCGAAGATGTAAATACATGCATTTCACGAGCTGCTGATTCCATAAGCTTAAAAGAGATACCTAGTTATGAAGTTAGGATGGGTGAGCCGTTCGACTGGATAAAGAAAACTCAGGAATCATTCCATCCTGTTGAAGTTACTGAAGGACTTTGGATTGTGCCCGAGTGGAGAATTCCCCCTGATACCAAAGCAACAAATATAATTCTAAATCCTGGATTGGCATTTGGAACTGGGGAGCATCCGACTACTAAGCTATGTCTATTGCTGCTTCATGGATTGATAAAGGGAAGAGAACTATTCTTGGACTATGGCACAGGTTCTGGAATTCTTGCAATTGCTGCAGTTAAGTTTGGTGCTGCCTCATCAGTCGGAATTGATATAGATCCTCAAGCAATTACCTCTGCACGCCAGAATGCTGCTCTGAACAACATAGGACCTGAAAAGATGCAATTTCACCTAGTAGCTAGCCAAAATCGCTCTCCCTTGATAGATCCATGTGGAGTTGTGGAAGATCAGAGCTCATCTGGAGTGGAAGCCATCTCAGAAACAGACAAGTATGACGTGGTCATTGCAAATATACTCTTAAATCCCCTATTAGATTTGGCAGATCATATTGTCTCTTATGCAAAGCCTGGGGCAGTCATTGGTCTTTCTGGCATTCTCTCTGAGCAGCTTCCATTTATCATAGAGCGATATTCACAGTTCTTGGAAGGCATATCAATTACAGAGATGGAAAATTGGGCTTGTGTCCATGGCACAAAGAAACAAAACCTTGCTGGCAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PrmA

Protein Analysis

382

Amino Acids

41.38

Weight (kDa)

5.06

Isoelectric Point (pI)

45.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014127)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53920
fragaria_vesca FvH4_3g19490
malus_domestica MD11G1252500.v1.1
prunus_persica Prupe.4G176500_v2.0.a1 Prupe.4G176500_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0032751
rosa_laevigata RLG00000033424
rosa_multiflora Rmu_sc0027546.1_g000001 Rmu_ssc0000293.1_g000003
rosa_roxburghii Rroxscaffold_1G00047350 Rroxscaffold_1G00047810
rosa_rugosa Rorug05G0133500
rosa_samantha Rh5AG226200 Rh5BG227300 Rh5CG255100 Rh5DG232000
rosa_wichuraiana Rw5G020740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 208
AccIII TCCGGA 1 cut(s) 169
AciI CCGC 3 cut(s) 9, 109, 191
AclWI GGATC 2 cut(s) 737, 845
AcsI RAATTY 3 cut(s) 225, 531, 684
AcuI CTGAAG 1 cut(s) 522
AflIII ACRYGT 1 cut(s) 241
AgsI TTSAA 2 cut(s) 75, 494
AhlI ACTAGT 1 cut(s) 293
AjiI CACGTC 1 cut(s) 922
AjnI CCWGG 2 cut(s) 571, 991
Alw21I GWGCWC 2 cut(s) 126, 881
Alw26I GTCTC 2 cut(s) 167, 982
AlwI GGATC 2 cut(s) 737, 845
AlwNI CAGNNNCTG 1 cut(s) 680
Ama87I CYCGRG 1 cut(s) 521
Aor13HI TCCGGA 1 cut(s) 169
ApeKI GCWGC 9 cut(s) 146, 231, 392, 625, 698, 716, 776, 1030, 1140
ApoI RAATTY 3 cut(s) 225, 531, 684
AspS9I GGNCC 1 cut(s) 794
AsuHPI GGTGA 3 cut(s) 71, 455, 806
AsuNHI GCTAGC 1 cut(s) 824
AvaI CYCGRG 1 cut(s) 521
AvaII GGWCC 1 cut(s) 794
BaeGI GKGCMC 1 cut(s) 522
BanII GRGCYC 2 cut(s) 126, 881
BauI CACGAG 1 cut(s) 387
Bbv12I GWGCWC 2 cut(s) 126, 881
BbvI GCAGC 8 cut(s) 133, 218, 379, 612, 685, 703, 763, 1042
BccI CCATC 5 cut(s) 91, 433, 492, 905, 1084
BceAI ACGGC 1 cut(s) 433
BciT130I CCWGG 2 cut(s) 573, 993
BcoDI GTCTC 2 cut(s) 167, 982
BcuI ACTAGT 1 cut(s) 293
BfaI CTAG 5 cut(s) 143, 294, 423, 818, 825
BfmI CTRYAG 1 cut(s) 699
BisI GCNGC 9 cut(s) 147, 232, 393, 626, 699, 717, 777, 1031, 1141
BlsI GCNGC 9 cut(s) 148, 233, 394, 627, 700, 718, 778, 1032, 1142
Bme1390I CCNGG 2 cut(s) 573, 993
Bme18I GGWCC 1 cut(s) 794
BmeT110I CYCGRG 1 cut(s) 521
BmgBI CACGTC 1 cut(s) 922
BmgT120I GGNCC 1 cut(s) 794
BmiI GGNNCC 1 cut(s) 195
BmrFI CCNGG 2 cut(s) 573, 993
BmrI ACTGGG 1 cut(s) 600
BmsI GCATC 3 cut(s) 348, 607, 795
BmtI GCTAGC 1 cut(s) 828
BmuI ACTGGG 1 cut(s) 600
BpmI CTGGAG 1 cut(s) 906
BpuEI CTTGAG 1 cut(s) 732
Bsa29I ATCGAT 1 cut(s) 342
BsaBI GATNNNNATC 2 cut(s) 338, 741
BsaJI CCNNGG 3 cut(s) 186, 992, 1111
BsaWI WCCGGW 1 cut(s) 169
BsaXI ACNNNNNCTCC 4 cut(s) 151, 166, 181, 196
Bse1I ACTGG 2 cut(s) 461, 595
Bse3DI GCAATG 1 cut(s) 927
Bse8I GATNNNNATC 2 cut(s) 338, 741
BseAI TCCGGA 1 cut(s) 169
BseBI CCWGG 2 cut(s) 573, 993
BseCI ATCGAT 1 cut(s) 342
BseDI CCNNGG 3 cut(s) 186, 992, 1111
BseGI GGATG 3 cut(s) 444, 484, 598
BseJI GATNNNNATC 2 cut(s) 338, 741
BseMI GCAATG 1 cut(s) 927
BseMII CTCAG 5 cut(s) 52, 130, 485, 915, 1017
BseNI ACTGG 2 cut(s) 461, 595
BseSI GKGCMC 1 cut(s) 522
BseXI GCAGC 8 cut(s) 133, 218, 379, 612, 685, 703, 763, 1042
BsgI GTGCAG 1 cut(s) 747
Bsh1236I CGCG 1 cut(s) 208
BshVI ATCGAT 1 cut(s) 342
BsiHKAI GWGCWC 2 cut(s) 126, 881
BsiHKCI CYCGRG 1 cut(s) 521
BsiSI CCGG 1 cut(s) 170
BsmAI GTCTC 2 cut(s) 167, 982
BsmI GAATGC 2 cut(s) 778, 1017
BsoBI CYCGRG 1 cut(s) 521
Bsp1286I GDGCHC 3 cut(s) 126, 522, 881
Bsp13I TCCGGA 1 cut(s) 169
Bsp143I GATC 4 cut(s) 742, 850, 871, 967
Bsp19I CCATGG 1 cut(s) 1111
BspACI CCGC 3 cut(s) 9, 109, 191
BspCNI CTCAG 5 cut(s) 51, 129, 484, 914, 1018
BspDI ATCGAT 1 cut(s) 342
BspEI TCCGGA 1 cut(s) 169
BspFNI CGCG 1 cut(s) 208
BspLI GGNNCC 1 cut(s) 195
BspMAI CTGCAG 1 cut(s) 703
BspOI GCTAGC 1 cut(s) 828
BspPI GGATC 2 cut(s) 737, 845
BsrDI GCAATG 1 cut(s) 927
BsrI ACTGG 2 cut(s) 461, 595
BssECI CCNNGG 3 cut(s) 186, 992, 1111
BssMI GATC 4 cut(s) 742, 850, 871, 967
BssSI CACGAG 1 cut(s) 387
BssT1I CCWWGG 1 cut(s) 1111
Bst2BI CACGAG 1 cut(s) 387
Bst2UI CCWGG 2 cut(s) 573, 993
Bst4CI ACNGT 1 cut(s) 1062
Bst6I CTCTTC 1 cut(s) 643
BstAPI GCANNNNNTGC 1 cut(s) 698
BstC8I GCNNGC 4 cut(s) 27, 766, 826, 1138
BstDEI CTNAG 6 cut(s) 38, 116, 471, 609, 901, 1026
BstDSI CCRYGG 1 cut(s) 1111
BstF5I GGATG 3 cut(s) 444, 484, 598
BstFNI CGCG 1 cut(s) 208
BstKTI GATC 4 cut(s) 745, 853, 874, 970
BstMAI GTCTC 2 cut(s) 167, 982
BstMBI GATC 4 cut(s) 742, 850, 871, 967
BstMWI GCNNNNNNNGC 4 cut(s) 22, 48, 698, 834
BstNI CCWGG 2 cut(s) 573, 993
BstNSI RCATGY 2 cut(s) 245, 381
BstSCI CCNGG 2 cut(s) 571, 991
BstSFI CTRYAG 1 cut(s) 699
BstSLI GKGCMC 1 cut(s) 522
BstUI CGCG 1 cut(s) 208
BstV1I GCAGC 8 cut(s) 133, 218, 379, 612, 685, 703, 763, 1042
BstX2I RGATCY 2 cut(s) 742, 850
BstYI RGATCY 2 cut(s) 742, 850
Bsu15I ATCGAT 1 cut(s) 342
BsuTUI ATCGAT 1 cut(s) 342
BtgI CCRYGG 1 cut(s) 1111
BtgZI GCGATG 1 cut(s) 69
BtrI CACGTC 1 cut(s) 922
BtsCI GGATG 3 cut(s) 444, 484, 598
Cac8I GCNNGC 4 cut(s) 27, 766, 826, 1138
CaiI CAGNNNCTG 1 cut(s) 680
Cfr13I GGNCC 1 cut(s) 794
ClaI ATCGAT 1 cut(s) 342
CviAII CATG 5 cut(s) 242, 378, 632, 855, 1112
DdeI CTNAG 6 cut(s) 38, 116, 471, 609, 901, 1026
DpnI GATC 4 cut(s) 744, 852, 873, 969
DpnII GATC 4 cut(s) 742, 850, 871, 967
Eam1104I CTCTTC 1 cut(s) 643
EarI CTCTTC 1 cut(s) 643
EciI GGCGGA 1 cut(s) 206
Ecl136II GAGCTC 2 cut(s) 124, 879
Eco130I CCWWGG 1 cut(s) 1111
Eco24I GRGCYC 2 cut(s) 126, 881
Eco47I GGWCC 1 cut(s) 794
Eco53kI GAGCTC 2 cut(s) 124, 879
Eco57I CTGAAG 1 cut(s) 522
Eco88I CYCGRG 1 cut(s) 521
EcoICRI GAGCTC 2 cut(s) 124, 879
EcoO109I RGGNCCY 1 cut(s) 794
EcoRI GAATTC 2 cut(s) 531, 684
EcoRII CCWGG 2 cut(s) 571, 991
EcoT14I CCWWGG 1 cut(s) 1111
EcoT22I ATGCAT 1 cut(s) 383
EcoT38I GRGCYC 2 cut(s) 126, 881
ErhI CCWWGG 1 cut(s) 1111
FaeI CATG 5 cut(s) 245, 381, 635, 858, 1115
FatI CATG 5 cut(s) 241, 377, 631, 854, 1111
Fnu4HI GCNGC 9 cut(s) 147, 232, 393, 626, 699, 717, 777, 1031, 1141
FokI GGATG 3 cut(s) 451, 471, 585
FriOI GRGCYC 2 cut(s) 126, 881
Fsp4HI GCNGC 9 cut(s) 147, 232, 393, 626, 699, 717, 777, 1031, 1141
FspBI CTAG 5 cut(s) 143, 294, 423, 818, 825
GluI GCNGC 9 cut(s) 147, 232, 393, 626, 699, 717, 777, 1031, 1141
GsuI CTGGAG 1 cut(s) 906
HapII CCGG 1 cut(s) 170
Hin1II CATG 5 cut(s) 245, 381, 635, 858, 1115
HindIII AAGCTT 1 cut(s) 406
HinfI GANTC 4 cut(s) 175, 344, 398, 476
HpaII CCGG 1 cut(s) 170
HphI GGTGA 3 cut(s) 71, 455, 806
Hpy188I TCNGA 8 cut(s) 119, 262, 603, 731, 783, 876, 904, 1027
Hpy188III TCNNGA 5 cut(s) 170, 387, 473, 681, 885
Hpy99I CGWCG 1 cut(s) 305
HpyAV CCTTC 4 cut(s) 70, 81, 497, 1064
HpyCH4III ACNGT 1 cut(s) 1062
HpyCH4IV ACGT 1 cut(s) 921
HpyF10VI GCNNNNNNNGC 4 cut(s) 22, 48, 698, 834
HpyF3I CTNAG 6 cut(s) 38, 116, 471, 609, 901, 1026
HpySE526I ACGT 1 cut(s) 921
Hsp92II CATG 5 cut(s) 245, 381, 635, 858, 1115
Kpn2I TCCGGA 1 cut(s) 169
Kzo9I GATC 4 cut(s) 742, 850, 871, 967
LmnI GCTCC 2 cut(s) 193, 595
Lsp1109I GCAGC 8 cut(s) 133, 218, 379, 612, 685, 703, 763, 1042
LweI GCATC 3 cut(s) 348, 607, 795
MaeI CTAG 5 cut(s) 143, 294, 423, 818, 825
MaeII ACGT 1 cut(s) 921
MaeIII GTNAC 1 cut(s) 496
MalI GATC 4 cut(s) 744, 852, 873, 969
MboI GATC 4 cut(s) 742, 850, 871, 967
MboII GAAGA 7 cut(s) 91, 156, 317, 320, 377, 660, 881
MfeI CAATTG 1 cut(s) 693
MflI RGATCY 2 cut(s) 742, 850
MhlI GDGCHC 3 cut(s) 126, 522, 881
MlyI GAGTC 1 cut(s) 169
MmeI TCCRAC 2 cut(s) 626, 709
MnlI CCTC 6 cut(s) 100, 196, 256, 730, 756, 769
Mph1103I ATGCAT 1 cut(s) 383
MroI TCCGGA 1 cut(s) 169
MseI TTAA 3 cut(s) 410, 705, 944
MspI CCGG 1 cut(s) 170
MspR9I CCNGG 2 cut(s) 573, 993
MunI CAATTG 1 cut(s) 693
Mva1269I GAATGC 2 cut(s) 778, 1017
MvaI CCWGG 2 cut(s) 573, 993
MvnI CGCG 1 cut(s) 208
MwoI GCNNNNNNNGC 4 cut(s) 22, 48, 698, 834
NcoI CCATGG 1 cut(s) 1111
NdeII GATC 4 cut(s) 742, 850, 871, 967
NheI GCTAGC 1 cut(s) 824
NlaIII CATG 5 cut(s) 245, 381, 635, 858, 1115
NlaIV GGNNCC 1 cut(s) 195
NmeAIII GCCGAG 1 cut(s) 167
NsiI ATGCAT 1 cut(s) 383
NspI RCATGY 2 cut(s) 245, 381
PciI ACATGT 1 cut(s) 241
PcsI WCGNNNNNNNCGW 1 cut(s) 327
PctI GAATGC 2 cut(s) 778, 1017
PfeI GAWTC 3 cut(s) 344, 398, 476
PflFI GACNNNGTC 1 cut(s) 923
PfoI TCCNGGA 1 cut(s) 571
PkrI GCNGC 9 cut(s) 148, 233, 394, 627, 700, 718, 778, 1032, 1142
PleI GAGTC 1 cut(s) 169
PpsI GAGTC 1 cut(s) 169
PpuMI RGGWCCY 1 cut(s) 794
PscI ACATGT 1 cut(s) 241
Psp124BI GAGCTC 2 cut(s) 126, 881
Psp5II RGGWCCY 1 cut(s) 794
Psp6I CCWGG 2 cut(s) 571, 991
PspGI CCWGG 2 cut(s) 571, 991
PspN4I GGNNCC 1 cut(s) 195
PspPI GGNCC 1 cut(s) 794
PspPPI RGGWCCY 1 cut(s) 794
PstI CTGCAG 1 cut(s) 703
PstNI CAGNNNCTG 1 cut(s) 680
PsuI RGATCY 2 cut(s) 742, 850
PsyI GACNNNGTC 1 cut(s) 923
SacI GAGCTC 2 cut(s) 126, 881
SaqAI TTAA 3 cut(s) 410, 705, 944
SatI GCNGC 9 cut(s) 147, 232, 393, 626, 699, 717, 777, 1031, 1141
Sau3AI GATC 4 cut(s) 742, 850, 871, 967
Sau96I GGNCC 1 cut(s) 794
SchI GAGTC 1 cut(s) 169
ScrFI CCNGG 2 cut(s) 573, 993
SduI GDGCHC 3 cut(s) 126, 522, 881
SfaNI GCATC 3 cut(s) 348, 607, 795
SfcI CTRYAG 1 cut(s) 699
SinI GGWCC 1 cut(s) 794
SmlI CTYRAG 1 cut(s) 747
SmoI CTYRAG 1 cut(s) 747
SpeI ACTAGT 1 cut(s) 293
SsiI CCGC 3 cut(s) 9, 109, 191
SspMI CTAG 5 cut(s) 143, 294, 423, 818, 825
SstI GAGCTC 2 cut(s) 126, 881
StyD4I CCNGG 2 cut(s) 571, 991
StyI CCWWGG 1 cut(s) 1111
TaaI ACNGT 1 cut(s) 1062
TaiI ACGT 1 cut(s) 924
TaqI TCGA 3 cut(s) 300, 342, 453
TfiI GAWTC 3 cut(s) 344, 398, 476
Tru1I TTAA 3 cut(s) 410, 705, 944
Tru9I TTAA 3 cut(s) 410, 705, 944
TseI GCWGC 9 cut(s) 146, 231, 392, 625, 698, 716, 776, 1030, 1140
TspDTI ATGAA 2 cut(s) 444, 620
TspGWI ACGGA 1 cut(s) 336
Tth111I GACNNNGTC 1 cut(s) 923
VpaK11BI GGWCC 1 cut(s) 794
XapI RAATTY 3 cut(s) 225, 531, 684
XceI RCATGY 2 cut(s) 245, 381
XcmI CCANNNNNNNNNTGG 1 cut(s) 355
XspI CTAG 5 cut(s) 143, 294, 423, 818, 825
Zsp2I ATGCAT 1 cut(s) 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.