Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004011

Physical Location & Seq

Genomic Coordinates Forward (+)

16481322 .. 16482835

Gene Structure 1514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g23470.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGTTCGTGGATCAATCCAATGTTTGGAGAGCATGTCTCTCTTGGTTCATGTTCATCCTCTTTGGAATCGTTGTCCCTGCCATTTCCCATTTCGTGTTTGCCTGCGCCCCCTGCGACGGAAATCACCAGAGGCCCTATGACAATGTCGTGCAATTGTCGTTGAGCAGCGTTGCGACGGTGTCATTTCTGTGCCTCTCATGGTTCGTAAGGAAGTTTGGGCTTAAGAGGTTCTTGTTCTTTGATAAGCTCTATCATGAGAGCGAAACGGTCAGGAGGGAATACACAGCACAATTGAATAGATCATTGAGAATTCTCTCCATTTTTGTCCTACCATGCTTCGTTGCCGAGAGTGTGTATAAGATATGGTGGTACACTTCTGGACTATCAAAAGTGCCTTTCTTAGCTAATGTTTATTTATGCTCAATAACTTTGGTTACCGGCCTCCTCATTTTACTCCGGAGTGCAACCAAAATAACACACAAAGCCCAAGCAGTGGCATGTCTAGCCACCAAGTGGCATGTTTGTGCCACACTGGAGACGTTTGATGCAACCGAGGTGGATTCTCCTACGGCACAGGTGGCCAATGATCCAGGAATTCATATAATTACACACGAAGAATCAGACGGGGATGAGGTTAGTGAGGAAGAAGATGACTTGGAAAACACAAAGATGGTGCCATCTTATGCATATAATACCATTTCTTACCATAAACGTCAAGCTCTAATGACCTATTTGGAGAACAATAAAGCCGGCATTACTGTTTACGGGTTCACGTTGGATAGGACTACACTGCACATGTTAGTTATGATTGAGTTTTCGTTAATTCTATGGCTGTTGGGGAAGACCATTAATGGAATTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3537

Protein Analysis

288

Amino Acids

32.64

Weight (kDa)

6.13

Isoelectric Point (pI)

51.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3537	PF12056	1 - 138	1.3e-52	Protein of unknown function (DUF3537)
DUF3537	PF12056	137 - 270	3.6e-49	Protein of unknown function (DUF3537)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50630 AT1G50630 AT3G20300
fragaria_vesca	FvH4_3g23460 FvH4_3g23460 FvH4_3g23460 FvH4_3g23470
malus_domestica	MD11G1210400.v1.1 MD11G1210500.v1.1
prunus_persica	Prupe.4G222500_v2.0.a1 Prupe.4G222600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0041291 RchiOBHm_Chr5g0041311
rosa_laevigata	RLG00000034048 RLG00000034049
rosa_multiflora	Rmu_co8309071.1_g000001 Rmu_sc0002715.1_g000003 Rmu_sc0015643.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039320 Rroxscaffold_1G00039330
rosa_rugosa	Rorug05G0191200 Rorug05G0191200 Rorug05G0191200
rosa_samantha	Rh5AG277400 Rh5AG277500 Rh5BG282000 Rh5BG282100 Rh5CG314300 Rh5CG314400 Rh5DG290800 Rh5DG290900
rosa_wichuraiana	Rw5G026080 Rw5G026110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	673
AccB7I	CCANNNNNTGG	3 cut(s)	24, 493, 513
AccIII	TCCGGA	1 cut(s)	456
AclWI	GGATC	2 cut(s)	18, 581
AcoI	YGGCCR	1 cut(s)	579
AcsI	RAATTY	3 cut(s)	309, 594, 855
AdeI	CACNNNGTG	1 cut(s)	513
AfaI	GTAC	1 cut(s)	371
AfiI	CCNNNNNNNGG	4 cut(s)	24, 116, 493, 513
AflII	CTTAAG	1 cut(s)	221
AflIII	ACRYGT	1 cut(s)	795
AgsI	TTSAA	1 cut(s)	295
AjnI	CCWGG	1 cut(s)	589
AluBI	AGCT	3 cut(s)	247, 404, 719
AluI	AGCT	3 cut(s)	247, 404, 719
Alw26I	GTCTC	2 cut(s)	41, 530
AlwI	GGATC	2 cut(s)	18, 581
Aor13HI	TCCGGA	1 cut(s)	456
AoxI	GGCC	3 cut(s)	131, 439, 579
ApeKI	GCWGC	1 cut(s)	165
ApoI	RAATTY	3 cut(s)	309, 594, 855
AseI	ATTAAT	1 cut(s)	849
AspLEI	GCGC	1 cut(s)	107
AspS9I	GGNCC	1 cut(s)	132
AsuHPI	GGTGA	1 cut(s)	116
BalI	TGGCCA	1 cut(s)	581
BanI	GGYRCC	1 cut(s)	673
BbsI	GAAGAC	1 cut(s)	848
BbvI	GCAGC	1 cut(s)	177
BccI	CCATC	2 cut(s)	664, 685
BceAI	ACGGC	1 cut(s)	585
BciT130I	CCWGG	1 cut(s)	591
BcoDI	GTCTC	2 cut(s)	41, 530
BfaI	CTAG	1 cut(s)	503
BfrI	CTTAAG	1 cut(s)	221
BisI	GCNGC	1 cut(s)	166
BlsI	GCNGC	1 cut(s)	167
Bme1390I	CCNGG	1 cut(s)	591
BmgT120I	GGNCC	1 cut(s)	132
BmiI	GGNNCC	1 cut(s)	675
BmrFI	CCNGG	1 cut(s)	591
BmsI	GCATC	1 cut(s)	535
BpiI	GAAGAC	1 cut(s)	848
BplI	GAGNNNNNCTC	2 cut(s)	21, 53
BpmI	CTGGAG	1 cut(s)	554
BsaJI	CCNNGG	1 cut(s)	552
BsaWI	WCCGGW	1 cut(s)	456
BsaXI	ACNNNNNCTCC	2 cut(s)	19, 49
Bsc4I	CCNNNNNNNGG	4 cut(s)	24, 116, 493, 513
Bse118I	RCCGGY	2 cut(s)	437, 749
Bse1I	ACTGG	1 cut(s)	537
BseAI	TCCGGA	1 cut(s)	456
BseBI	CCWGG	1 cut(s)	591
BseDI	CCNNGG	1 cut(s)	552
BseGI	GGATG	2 cut(s)	54, 634
BseLI	CCNNNNNNNGG	4 cut(s)	24, 116, 493, 513
BseNI	ACTGG	1 cut(s)	537
BseRI	GAGGAG	1 cut(s)	434
BseXI	GCAGC	1 cut(s)	177
BsgI	GTGCAG	1 cut(s)	776
BshFI	GGCC	3 cut(s)	133, 441, 581
BshNI	GGYRCC	1 cut(s)	673
BsiSI	CCGG	3 cut(s)	438, 457, 750
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	4 cut(s)	24, 116, 493, 513
BsmAI	GTCTC	2 cut(s)	41, 530
BsmBI	CGTCTC	1 cut(s)	530
BsmFI	GGGAC	1 cut(s)	59
BsnI	GGCC	3 cut(s)	133, 441, 581
Bsp13I	TCCGGA	1 cut(s)	456
Bsp143I	GATC	3 cut(s)	10, 299, 586
BspANI	GGCC	3 cut(s)	133, 441, 581
BspEI	TCCGGA	1 cut(s)	456
BspHI	TCATGA	1 cut(s)	253
BspLI	GGNNCC	1 cut(s)	675
BspPI	GGATC	2 cut(s)	18, 581
BspT107I	GGYRCC	1 cut(s)	673
BspTI	CTTAAG	1 cut(s)	221
BsrFI	RCCGGY	2 cut(s)	437, 749
BsrI	ACTGG	1 cut(s)	537
BssAI	RCCGGY	2 cut(s)	437, 749
BssECI	CCNNGG	1 cut(s)	552
BssMI	GATC	3 cut(s)	10, 299, 586
Bst2UI	CCWGG	1 cut(s)	591
Bst4CI	ACNGT	3 cut(s)	178, 268, 760
BstAFI	CTTAAG	1 cut(s)	221
BstC8I	GCNNGC	2 cut(s)	103, 751
BstDEI	CTNAG	2 cut(s)	400, 861
BstEII	GGTNACC	1 cut(s)	433
BstF5I	GGATG	2 cut(s)	54, 634
BstHHI	GCGC	1 cut(s)	107
BstKTI	GATC	3 cut(s)	13, 302, 589
BstMAI	GTCTC	2 cut(s)	41, 530
BstMBI	GATC	3 cut(s)	10, 299, 586
BstMWI	GCNNNNNNNGC	3 cut(s)	111, 503, 578
BstNI	CCWGG	1 cut(s)	591
BstNSI	RCATGY	4 cut(s)	36, 501, 521, 799
BstPI	GGTNACC	1 cut(s)	433
BstSCI	CCNGG	1 cut(s)	589
BstV1I	GCAGC	1 cut(s)	177
BstV2I	GAAGAC	1 cut(s)	848
BsuRI	GGCC	3 cut(s)	133, 441, 581
BtsCI	GGATG	2 cut(s)	54, 634
BtsI	GCAGTG	2 cut(s)	498, 788
BtsIMutI	CAGTG	3 cut(s)	498, 530, 788
Cac8I	GCNNGC	2 cut(s)	103, 751
CciI	TCATGA	1 cut(s)	253
CfoI	GCGC	1 cut(s)	107
Cfr10I	RCCGGY	2 cut(s)	437, 749
Cfr13I	GGNCC	1 cut(s)	132
Csp6I	GTAC	1 cut(s)	370
CspCI	CAANNNNNGTGG	2 cut(s)	537, 572
CviAII	CATG	8 cut(s)	33, 49, 198, 254, 333, 498, 518, 796
CviQI	GTAC	1 cut(s)	370
DdeI	CTNAG	2 cut(s)	400, 861
DpnI	GATC	3 cut(s)	12, 301, 588
DpnII	GATC	3 cut(s)	10, 299, 586
DraIII	CACNNNGTG	1 cut(s)	513
EaeI	YGGCCR	1 cut(s)	579
Eco91I	GGTNACC	1 cut(s)	433
EcoO109I	RGGNCCY	1 cut(s)	132
EcoO65I	GGTNACC	1 cut(s)	433
EcoRI	GAATTC	2 cut(s)	309, 594
EcoRII	CCWGG	1 cut(s)	589
EcoT22I	ATGCAT	1 cut(s)	688
Esp3I	CGTCTC	1 cut(s)	530
FaeI	CATG	8 cut(s)	36, 52, 201, 257, 336, 501, 521, 799
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	8 cut(s)	32, 48, 197, 253, 332, 497, 517, 795
Fnu4HI	GCNGC	1 cut(s)	166
FokI	GGATG	2 cut(s)	41, 641
Fsp4HI	GCNGC	1 cut(s)	166
FspBI	CTAG	1 cut(s)	503
GlaI	GCGC	1 cut(s)	106
GluI	GCNGC	1 cut(s)	166
GsuI	CTGGAG	1 cut(s)	554
HaeIII	GGCC	3 cut(s)	133, 441, 581
HapII	CCGG	3 cut(s)	438, 457, 750
HhaI	GCGC	1 cut(s)	107
Hin1II	CATG	8 cut(s)	36, 52, 201, 257, 336, 501, 521, 799
Hin6I	GCGC	1 cut(s)	105
HinP1I	GCGC	1 cut(s)	105
HinfI	GANTC	3 cut(s)	66, 560, 617
HpaII	CCGG	3 cut(s)	438, 457, 750
HphI	GGTGA	1 cut(s)	116
Hpy166II	GTNNAC	3 cut(s)	372, 763, 771
Hpy188I	TCNGA	1 cut(s)	622
Hpy188III	TCNNGA	4 cut(s)	254, 271, 378, 457
Hpy8I	GTNNAC	3 cut(s)	372, 763, 771
Hpy99I	CGWCG	2 cut(s)	119, 178
HpyCH4III	ACNGT	3 cut(s)	178, 268, 760
HpyCH4IV	ACGT	3 cut(s)	539, 712, 773
HpyCH4V	TGCA	5 cut(s)	151, 464, 548, 686, 793
HpyF10VI	GCNNNNNNNGC	3 cut(s)	111, 503, 578
HpyF3I	CTNAG	2 cut(s)	400, 861
HpySE526I	ACGT	3 cut(s)	539, 712, 773
Hsp92II	CATG	8 cut(s)	36, 52, 201, 257, 336, 501, 521, 799
HspAI	GCGC	1 cut(s)	105
Kpn2I	TCCGGA	1 cut(s)	456
KroI	GCCGGC	1 cut(s)	749
KroNI	GCCGGC	1 cut(s)	751
Kzo9I	GATC	3 cut(s)	10, 299, 586
Lsp1109I	GCAGC	1 cut(s)	177
LweI	GCATC	1 cut(s)	535
MaeI	CTAG	1 cut(s)	503
MaeII	ACGT	3 cut(s)	539, 712, 773
MaeIII	GTNAC	1 cut(s)	433
MalI	GATC	3 cut(s)	12, 301, 588
MboI	GATC	3 cut(s)	10, 299, 586
MboII	GAAGA	4 cut(s)	626, 656, 659, 853
MfeI	CAATTG	2 cut(s)	152, 290
MlsI	TGGCCA	1 cut(s)	581
MluCI	AATT	7 cut(s)	152, 290, 309, 594, 603, 822, 855
MluNI	TGGCCA	1 cut(s)	581
MmeI	TCCRAC	1 cut(s)	756
Mox20I	TGGCCA	1 cut(s)	581
Mph1103I	ATGCAT	1 cut(s)	688
MroI	TCCGGA	1 cut(s)	456
MroNI	GCCGGC	1 cut(s)	749
MscI	TGGCCA	1 cut(s)	581
MseI	TTAA	3 cut(s)	222, 821, 849
MslI	CAYNNNNRTG	3 cut(s)	187, 522, 668
Msp20I	TGGCCA	1 cut(s)	581
MspCI	CTTAAG	1 cut(s)	221
MspI	CCGG	3 cut(s)	438, 457, 750
MspR9I	CCNGG	1 cut(s)	591
MunI	CAATTG	2 cut(s)	152, 290
MvaI	CCWGG	1 cut(s)	591
MwoI	GCNNNNNNNGC	3 cut(s)	111, 503, 578
NaeI	GCCGGC	1 cut(s)	751
NdeII	GATC	3 cut(s)	10, 299, 586
NgoMIV	GCCGGC	1 cut(s)	749
NlaIII	CATG	8 cut(s)	36, 52, 201, 257, 336, 501, 521, 799
NlaIV	GGNNCC	1 cut(s)	675
NmeAIII	GCCGAG	1 cut(s)	370
NsiI	ATGCAT	1 cut(s)	688
NspI	RCATGY	4 cut(s)	36, 501, 521, 799
PagI	TCATGA	1 cut(s)	253
PciI	ACATGT	1 cut(s)	795
PdiI	GCCGGC	1 cut(s)	751
PfeI	GAWTC	3 cut(s)	66, 560, 617
PflFI	GACNNNGTC	2 cut(s)	143, 178
PflMI	CCANNNNNTGG	3 cut(s)	24, 493, 513
PfoI	TCCNGGA	1 cut(s)	589
PkrI	GCNGC	1 cut(s)	167
PscI	ACATGT	1 cut(s)	795
PshBI	ATTAAT	1 cut(s)	849
Psp6I	CCWGG	1 cut(s)	589
PspEI	GGTNACC	1 cut(s)	433
PspGI	CCWGG	1 cut(s)	589
PspN4I	GGNNCC	1 cut(s)	675
PspPI	GGNCC	1 cut(s)	132
PsyI	GACNNNGTC	2 cut(s)	143, 178
RsaI	GTAC	1 cut(s)	371
RsaNI	GTAC	1 cut(s)	370
RseI	CAYNNNNRTG	3 cut(s)	187, 522, 668
SaqAI	TTAA	3 cut(s)	222, 821, 849
SatI	GCNGC	1 cut(s)	166
Sau3AI	GATC	3 cut(s)	10, 299, 586
Sau96I	GGNCC	1 cut(s)	132
ScrFI	CCNGG	1 cut(s)	591
SfaNI	GCATC	1 cut(s)	535
SmiMI	CAYNNNNRTG	3 cut(s)	187, 522, 668
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	7 cut(s)	152, 290, 309, 594, 603, 822, 855
SspMI	CTAG	1 cut(s)	503
StyD4I	CCNGG	1 cut(s)	589
TaaI	ACNGT	3 cut(s)	178, 268, 760
TaiI	ACGT	3 cut(s)	542, 715, 776
TasI	AATT	7 cut(s)	152, 290, 309, 594, 603, 822, 855
TfiI	GAWTC	3 cut(s)	66, 560, 617
Tru1I	TTAA	3 cut(s)	222, 821, 849
Tru9I	TTAA	3 cut(s)	222, 821, 849
TscAI	CASTG	3 cut(s)	498, 537, 795
TseI	GCWGC	1 cut(s)	165
TspDTI	ATGAA	3 cut(s)	37, 43, 587
TspGWI	ACGGA	1 cut(s)	132
TspRI	CASTG	3 cut(s)	498, 537, 795
Tth111I	GACNNNGTC	2 cut(s)	143, 178
Van91I	CCANNNNNTGG	3 cut(s)	24, 493, 513
Vha464I	CTTAAG	1 cut(s)	221
VspI	ATTAAT	1 cut(s)	849
XapI	RAATTY	3 cut(s)	309, 594, 855
XceI	RCATGY	4 cut(s)	36, 501, 521, 799
XspI	CTAG	1 cut(s)	503
Zsp2I	ATGCAT	1 cut(s)	688

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.