Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8309071.1

Orthogroup ID

OG0004011

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 474

Gene Structure 474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8309071.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

atgggagacaatggggatgccctgttaaatcgaaagagcaacaagttccagcgctgcgtttcacatgcacatgatgaattacagatctttagatcctacctgcgatggatgttcgtggatcaatccaatgtttggagagcatgtctctcttggtgcatgttcattctctttggaatcgttgtccccgccatttcccatttcgtgtttgcctgcgccacctgcgacggaaaccacaagaggccctatgacagtgtcgtggaattgtcattgagcagcgtcgcgacggtgtcatttgtgtgcctctcatggtttgtaaggaagtttgggctcagaaggttcttgttttttgataagctttattatgagagcgaaaccgtcaggagggaatatacagcacaattaaat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3537

Protein Analysis

135

Amino Acids

15.86

Weight (kDa)

8.82

Isoelectric Point (pI)

61.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50630 AT1G50630 AT3G20300
fragaria_vesca	FvH4_3g23460 FvH4_3g23460 FvH4_3g23460 FvH4_3g23470
malus_domestica	MD11G1210400.v1.1 MD11G1210500.v1.1
prunus_persica	Prupe.4G222500_v2.0.a1 Prupe.4G222600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0041291 RchiOBHm_Chr5g0041311
rosa_laevigata	RLG00000034048 RLG00000034049
rosa_multiflora	Rmu_co8309071.1_g000001 Rmu_sc0002715.1_g000003 Rmu_sc0015643.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039320 Rroxscaffold_1G00039330
rosa_rugosa	Rorug05G0191200 Rorug05G0191200 Rorug05G0191200
rosa_samantha	Rh5AG277400 Rh5AG277500 Rh5BG282000 Rh5BG282100 Rh5CG314300 Rh5CG314400 Rh5DG290800 Rh5DG290900
rosa_wichuraiana	Rw5G026080 Rw5G026110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	227
Acc36I	ACCTGC	2 cut(s)	108, 227
AccB7I	CCANNNNNTGG	1 cut(s)	132
AccII	CGCG	1 cut(s)	281
AciI	CCGC	1 cut(s)	186
AclWI	GGATC	2 cut(s)	87, 126
AfeI	AGCGCT	1 cut(s)	53
AfiI	CCNNNNNNNGG	2 cut(s)	132, 381
AluBI	AGCT	1 cut(s)	355
AluI	AGCT	1 cut(s)	355
Alw26I	GTCTC	1 cut(s)	149
AlwI	GGATC	2 cut(s)	87, 126
Aor51HI	AGCGCT	1 cut(s)	53
AoxI	GGCC	1 cut(s)	239
ApeKI	GCWGC	2 cut(s)	54, 273
AspLEI	GCGC	2 cut(s)	54, 215
AspS9I	GGNCC	1 cut(s)	240
BanII	GRGCYC	1 cut(s)	330
BbvI	GCAGC	2 cut(s)	41, 285
BccI	CCATC	1 cut(s)	99
BcoDI	GTCTC	1 cut(s)	149
BfoI	RGCGCY	1 cut(s)	55
BfuAI	ACCTGC	2 cut(s)	108, 227
BglII	AGATCT	1 cut(s)	84
BisI	GCNGC	2 cut(s)	55, 274
BlsI	GCNGC	2 cut(s)	56, 275
BmgT120I	GGNCC	1 cut(s)	240
BmsI	GCATC	1 cut(s)	7
BplI	GAGNNNNNCTC	2 cut(s)	129, 161
BsaXI	ACNNNNNCTCC	2 cut(s)	127, 157
Bsc4I	CCNNNNNNNGG	2 cut(s)	132, 381
BseGI	GGATG	2 cut(s)	22, 114
BseLI	CCNNNNNNNGG	2 cut(s)	132, 381
BseMII	CTCAG	1 cut(s)	343
BseXI	GCAGC	2 cut(s)	41, 285
Bsh1236I	CGCG	1 cut(s)	281
BshFI	GGCC	1 cut(s)	241
BslFI	GGGAC	1 cut(s)	167
BslI	CCNNNNNNNGG	2 cut(s)	132, 381
BsmAI	GTCTC	1 cut(s)	149
BsmFI	GGGAC	1 cut(s)	167
BsnI	GGCC	1 cut(s)	241
Bsp1286I	GDGCHC	1 cut(s)	330
Bsp143I	GATC	3 cut(s)	84, 92, 118
Bsp68I	TCGCGA	1 cut(s)	281
BspACI	CCGC	1 cut(s)	186
BspANI	GGCC	1 cut(s)	241
BspCNI	CTCAG	1 cut(s)	342
BspFNI	CGCG	1 cut(s)	281
BspMI	ACCTGC	2 cut(s)	108, 227
BspPI	GGATC	2 cut(s)	87, 126
BssMI	GATC	3 cut(s)	84, 92, 118
Bst4CI	ACNGT	3 cut(s)	251, 286, 376
BstC8I	GCNNGC	1 cut(s)	211
BstDEI	CTNAG	1 cut(s)	329
BstF5I	GGATG	2 cut(s)	22, 114
BstFNI	CGCG	1 cut(s)	281
BstH2I	RGCGCY	1 cut(s)	55
BstHHI	GCGC	2 cut(s)	54, 215
BstKTI	GATC	3 cut(s)	87, 95, 121
BstMAI	GTCTC	1 cut(s)	149
BstMBI	GATC	3 cut(s)	84, 92, 118
BstMWI	GCNNNNNNNGC	1 cut(s)	219
BstNSI	RCATGY	3 cut(s)	68, 144, 160
BstUI	CGCG	1 cut(s)	281
BstV1I	GCAGC	2 cut(s)	41, 285
BstX2I	RGATCY	2 cut(s)	84, 92
BstYI	RGATCY	2 cut(s)	84, 92
BsuRI	GGCC	1 cut(s)	241
BtgZI	GCGATG	1 cut(s)	118
BtsCI	GGATG	2 cut(s)	22, 114
BtsIMutI	CAGTG	1 cut(s)	256
BtuMI	TCGCGA	1 cut(s)	281
BveI	ACCTGC	2 cut(s)	108, 227
Cac8I	GCNNGC	1 cut(s)	211
CfoI	GCGC	2 cut(s)	54, 215
Cfr13I	GGNCC	1 cut(s)	240
CseI	GACGC	1 cut(s)	265
CviAII	CATG	5 cut(s)	65, 71, 141, 157, 306
CviJI	RGCY	3 cut(s)	241, 328, 355
CviKI_1	RGCY	3 cut(s)	241, 328, 355
DdeI	CTNAG	1 cut(s)	329
DpnI	GATC	3 cut(s)	86, 94, 120
DpnII	GATC	3 cut(s)	84, 92, 118
Eco24I	GRGCYC	1 cut(s)	330
Eco47III	AGCGCT	1 cut(s)	53
EcoO109I	RGGNCCY	1 cut(s)	240
EcoT38I	GRGCYC	1 cut(s)	330
FaeI	CATG	5 cut(s)	68, 74, 144, 160, 309
FaiI	YATR	8 cut(s)	66, 72, 142, 158, 246, 307, 363, 390
FaqI	GGGAC	1 cut(s)	167
FatI	CATG	5 cut(s)	64, 70, 140, 156, 305
FauI	CCCGC	1 cut(s)	193
Fnu4HI	GCNGC	2 cut(s)	55, 274
FokI	GGATG	2 cut(s)	29, 121
FriOI	GRGCYC	1 cut(s)	330
Fsp4HI	GCNGC	2 cut(s)	55, 274
GlaI	GCGC	2 cut(s)	53, 214
GluI	GCNGC	2 cut(s)	55, 274
HaeII	RGCGCY	1 cut(s)	55
HaeIII	GGCC	1 cut(s)	241
HgaI	GACGC	1 cut(s)	265
HhaI	GCGC	2 cut(s)	54, 215
Hin1II	CATG	5 cut(s)	68, 74, 144, 160, 309
Hin6I	GCGC	2 cut(s)	52, 213
HinP1I	GCGC	2 cut(s)	52, 213
HindIII	AAGCTT	1 cut(s)	353
HinfI	GANTC	1 cut(s)	174
Hpy188I	TCNGA	1 cut(s)	332
Hpy188III	TCNNGA	2 cut(s)	280, 379
Hpy99I	CGWCG	3 cut(s)	227, 281, 286
HpyAV	CCTTC	1 cut(s)	327
HpyCH4III	ACNGT	3 cut(s)	251, 286, 376
HpyCH4V	TGCA	2 cut(s)	68, 156
HpyF10VI	GCNNNNNNNGC	1 cut(s)	219
HpyF3I	CTNAG	1 cut(s)	329
Hsp92II	CATG	5 cut(s)	68, 74, 144, 160, 309
HspAI	GCGC	2 cut(s)	52, 213
Kzo9I	GATC	3 cut(s)	84, 92, 118
LpnPI	CCDG	6 cut(s)	35, 62, 113, 223, 232, 364
Lsp1109I	GCAGC	2 cut(s)	41, 285
LweI	GCATC	1 cut(s)	7
MalI	GATC	3 cut(s)	86, 94, 120
MboI	GATC	3 cut(s)	84, 92, 118
MflI	RGATCY	2 cut(s)	84, 92
MhlI	GDGCHC	1 cut(s)	330
MluCI	AATT	3 cut(s)	77, 260, 398
MnlI	CCTC	3 cut(s)	231, 311, 375
MseI	TTAA	2 cut(s)	26, 401
MslI	CAYNNNNRTG	2 cut(s)	69, 295
MvnI	CGCG	1 cut(s)	281
MwoI	GCNNNNNNNGC	1 cut(s)	219
NdeII	GATC	3 cut(s)	84, 92, 118
NlaIII	CATG	5 cut(s)	68, 74, 144, 160, 309
NruI	TCGCGA	1 cut(s)	281
NspI	RCATGY	3 cut(s)	68, 144, 160
PaqCI	CACCTGC	1 cut(s)	227
PfeI	GAWTC	1 cut(s)	174
PflFI	GACNNNGTC	2 cut(s)	251, 286
PflMI	CCANNNNNTGG	1 cut(s)	132
PkrI	GCNGC	2 cut(s)	56, 275
PspPI	GGNCC	1 cut(s)	240
PsuI	RGATCY	2 cut(s)	84, 92
PsyI	GACNNNGTC	2 cut(s)	251, 286
RruI	TCGCGA	1 cut(s)	281
RseI	CAYNNNNRTG	2 cut(s)	69, 295
SaqAI	TTAA	2 cut(s)	26, 401
SatI	GCNGC	2 cut(s)	55, 274
Sau3AI	GATC	3 cut(s)	84, 92, 118
Sau96I	GGNCC	1 cut(s)	240
SduI	GDGCHC	1 cut(s)	330
SetI	ASST	4 cut(s)	102, 221, 338, 357
SfaNI	GCATC	1 cut(s)	7
SmiMI	CAYNNNNRTG	2 cut(s)	69, 295
Sse9I	AATT	3 cut(s)	77, 260, 398
SsiI	CCGC	1 cut(s)	186
TaaI	ACNGT	3 cut(s)	251, 286, 376
TaqI	TCGA	1 cut(s)	31
TasI	AATT	3 cut(s)	77, 260, 398
TfiI	GAWTC	1 cut(s)	174
Tru1I	TTAA	2 cut(s)	26, 401
Tru9I	TTAA	2 cut(s)	26, 401
TscAI	CASTG	1 cut(s)	256
TseI	GCWGC	2 cut(s)	54, 273
TspDTI	ATGAA	2 cut(s)	90, 151
TspGWI	ACGGA	1 cut(s)	240
TspRI	CASTG	1 cut(s)	256
Tth111I	GACNNNGTC	2 cut(s)	251, 286
Van91I	CCANNNNNTGG	1 cut(s)	132
XceI	RCATGY	3 cut(s)	68, 144, 160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.