RLG00000034049

Protein of unknown function (DUF3537)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0004011
Physical Location & Seq
Forward (+)
35851124 .. 35851564
441 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034049

Sequence Viewer

Length: 441 bp
ATGGGAGACAATGGGGATGCCCTGTTAAACCGAAAGAGCAACAAGTTCCAGCGCTGCGTTTCACATGCACATGATGAATTACAGATCTTTAGATCCTACCTGCGATGGATGTTCGTGGATCAATCCAATGTTTGGAGAGCATGTCTCTCTTGGTGCATGTTCATTATCTTTGGAATCGTTGTCCCCTCCATTTCCCATTTCGTGTTTGCCTGCGCCACCTGCGACGGAAACCACAAGAGGCCCTATGACAGTGTCGTGCAATTGTCATTGAGCAGCGTCGCGACGGTGTCATTTGTGTGCCTCTCATGGTTTGTAAGGAAGTTTGGGCTCCGAAGGTTCTTGTTTTTTGATAAGCTTTATTATGAGAGCGAAACCGTCAGGAGGGAATATACAGCACAATTAAATGTGAGTTTAACTTCCTCTGATTCTCTAGAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3537

Protein Analysis

147

Amino Acids

17.02

Weight (kDa)

8.81

Isoelectric Point (pI)

59.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3537 PF12056 25 - 138 4e-43 Protein of unknown function (DUF3537)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 227
Acc36I ACCTGC 2 cut(s) 108, 227
AccB7I CCANNNNNTGG 1 cut(s) 132
AccII CGCG 1 cut(s) 281
AclWI GGATC 2 cut(s) 87, 126
AfeI AGCGCT 1 cut(s) 53
AfiI CCNNNNNNNGG 2 cut(s) 132, 381
AluBI AGCT 1 cut(s) 355
AluI AGCT 1 cut(s) 355
Alw26I GTCTC 1 cut(s) 149
AlwI GGATC 2 cut(s) 87, 126
Aor51HI AGCGCT 1 cut(s) 53
AoxI GGCC 1 cut(s) 239
ApeKI GCWGC 2 cut(s) 54, 273
AspLEI GCGC 2 cut(s) 54, 215
AspS9I GGNCC 1 cut(s) 240
BanII GRGCYC 1 cut(s) 330
BbvI GCAGC 2 cut(s) 41, 285
BccI CCATC 1 cut(s) 99
BcoDI GTCTC 1 cut(s) 149
BfaI CTAG 1 cut(s) 431
BfoI RGCGCY 1 cut(s) 55
BfuAI ACCTGC 2 cut(s) 108, 227
BglII AGATCT 1 cut(s) 84
BisI GCNGC 2 cut(s) 55, 274
BlsI GCNGC 2 cut(s) 56, 275
BmgT120I GGNCC 1 cut(s) 240
BmiI GGNNCC 1 cut(s) 329
BmsI GCATC 1 cut(s) 7
BplI GAGNNNNNCTC 2 cut(s) 129, 161
BsaXI ACNNNNNCTCC 2 cut(s) 127, 157
Bsc4I CCNNNNNNNGG 2 cut(s) 132, 381
BseGI GGATG 2 cut(s) 22, 114
BseLI CCNNNNNNNGG 2 cut(s) 132, 381
BseXI GCAGC 2 cut(s) 41, 285
Bsh1236I CGCG 1 cut(s) 281
BshFI GGCC 1 cut(s) 241
BslFI GGGAC 1 cut(s) 167
BslI CCNNNNNNNGG 2 cut(s) 132, 381
BsmAI GTCTC 1 cut(s) 149
BsmFI GGGAC 1 cut(s) 167
BsnI GGCC 1 cut(s) 241
Bsp1286I GDGCHC 1 cut(s) 330
Bsp143I GATC 3 cut(s) 84, 92, 118
Bsp68I TCGCGA 1 cut(s) 281
BspANI GGCC 1 cut(s) 241
BspFNI CGCG 1 cut(s) 281
BspLI GGNNCC 1 cut(s) 329
BspMI ACCTGC 2 cut(s) 108, 227
BspPI GGATC 2 cut(s) 87, 126
BssMI GATC 3 cut(s) 84, 92, 118
Bst4CI ACNGT 3 cut(s) 251, 286, 376
BstC8I GCNNGC 1 cut(s) 211
BstF5I GGATG 2 cut(s) 22, 114
BstFNI CGCG 1 cut(s) 281
BstH2I RGCGCY 1 cut(s) 55
BstHHI GCGC 2 cut(s) 54, 215
BstKTI GATC 3 cut(s) 87, 95, 121
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 3 cut(s) 84, 92, 118
BstMWI GCNNNNNNNGC 1 cut(s) 219
BstNSI RCATGY 3 cut(s) 68, 144, 160
BstUI CGCG 1 cut(s) 281
BstV1I GCAGC 2 cut(s) 41, 285
BstX2I RGATCY 2 cut(s) 84, 92
BstYI RGATCY 2 cut(s) 84, 92
BsuRI GGCC 1 cut(s) 241
BtgZI GCGATG 1 cut(s) 118
BtsCI GGATG 2 cut(s) 22, 114
BtsIMutI CAGTG 1 cut(s) 256
BtuMI TCGCGA 1 cut(s) 281
BveI ACCTGC 2 cut(s) 108, 227
Cac8I GCNNGC 1 cut(s) 211
CfoI GCGC 2 cut(s) 54, 215
Cfr13I GGNCC 1 cut(s) 240
CseI GACGC 1 cut(s) 265
CviAII CATG 5 cut(s) 65, 71, 141, 157, 306
CviJI RGCY 3 cut(s) 241, 328, 355
CviKI_1 RGCY 3 cut(s) 241, 328, 355
DpnI GATC 3 cut(s) 86, 94, 120
DpnII GATC 3 cut(s) 84, 92, 118
Eco24I GRGCYC 1 cut(s) 330
Eco47III AGCGCT 1 cut(s) 53
EcoO109I RGGNCCY 1 cut(s) 240
EcoT38I GRGCYC 1 cut(s) 330
FaeI CATG 5 cut(s) 68, 74, 144, 160, 309
FaiI YATR 8 cut(s) 66, 72, 142, 158, 246, 307, 363, 390
FaqI GGGAC 1 cut(s) 167
FatI CATG 5 cut(s) 64, 70, 140, 156, 305
Fnu4HI GCNGC 2 cut(s) 55, 274
FokI GGATG 2 cut(s) 29, 121
FriOI GRGCYC 1 cut(s) 330
Fsp4HI GCNGC 2 cut(s) 55, 274
FspBI CTAG 1 cut(s) 431
GlaI GCGC 2 cut(s) 53, 214
GluI GCNGC 2 cut(s) 55, 274
HaeII RGCGCY 1 cut(s) 55
HaeIII GGCC 1 cut(s) 241
HgaI GACGC 1 cut(s) 265
HhaI GCGC 2 cut(s) 54, 215
Hin1II CATG 5 cut(s) 68, 74, 144, 160, 309
Hin6I GCGC 2 cut(s) 52, 213
HinP1I GCGC 2 cut(s) 52, 213
HindIII AAGCTT 1 cut(s) 353
HinfI GANTC 2 cut(s) 174, 425
Hpy188I TCNGA 2 cut(s) 332, 424
Hpy188III TCNNGA 3 cut(s) 280, 379, 431
Hpy99I CGWCG 3 cut(s) 227, 281, 286
HpyAV CCTTC 1 cut(s) 327
HpyCH4III ACNGT 3 cut(s) 251, 286, 376
HpyCH4V TGCA 3 cut(s) 68, 156, 259
HpyF10VI GCNNNNNNNGC 1 cut(s) 219
Hsp92II CATG 5 cut(s) 68, 74, 144, 160, 309
HspAI GCGC 2 cut(s) 52, 213
Kzo9I GATC 3 cut(s) 84, 92, 118
LmnI GCTCC 1 cut(s) 333
LpnPI CCDG 6 cut(s) 35, 62, 113, 223, 232, 364
Lsp1109I GCAGC 2 cut(s) 41, 285
LweI GCATC 1 cut(s) 7
MaeI CTAG 1 cut(s) 431
MalI GATC 3 cut(s) 86, 94, 120
MboI GATC 3 cut(s) 84, 92, 118
MfeI CAATTG 1 cut(s) 260
MflI RGATCY 2 cut(s) 84, 92
MhlI GDGCHC 1 cut(s) 330
MluCI AATT 3 cut(s) 77, 260, 398
MnlI CCTC 5 cut(s) 196, 231, 311, 375, 430
MseI TTAA 3 cut(s) 26, 401, 413
MslI CAYNNNNRTG 2 cut(s) 69, 295
MunI CAATTG 1 cut(s) 260
MvnI CGCG 1 cut(s) 281
MwoI GCNNNNNNNGC 1 cut(s) 219
NdeII GATC 3 cut(s) 84, 92, 118
NlaIII CATG 5 cut(s) 68, 74, 144, 160, 309
NlaIV GGNNCC 1 cut(s) 329
NruI TCGCGA 1 cut(s) 281
NspI RCATGY 3 cut(s) 68, 144, 160
PaqCI CACCTGC 1 cut(s) 227
PfeI GAWTC 2 cut(s) 174, 425
PflFI GACNNNGTC 2 cut(s) 251, 286
PflMI CCANNNNNTGG 1 cut(s) 132
PkrI GCNGC 2 cut(s) 56, 275
PspN4I GGNNCC 1 cut(s) 329
PspPI GGNCC 1 cut(s) 240
PsuI RGATCY 2 cut(s) 84, 92
PsyI GACNNNGTC 2 cut(s) 251, 286
RruI TCGCGA 1 cut(s) 281
RseI CAYNNNNRTG 2 cut(s) 69, 295
SaqAI TTAA 3 cut(s) 26, 401, 413
SatI GCNGC 2 cut(s) 55, 274
Sau3AI GATC 3 cut(s) 84, 92, 118
Sau96I GGNCC 1 cut(s) 240
SduI GDGCHC 1 cut(s) 330
SetI ASST 4 cut(s) 102, 221, 338, 357
SfaNI GCATC 1 cut(s) 7
SmiMI CAYNNNNRTG 2 cut(s) 69, 295
Sse9I AATT 3 cut(s) 77, 260, 398
SspMI CTAG 1 cut(s) 431
TaaI ACNGT 3 cut(s) 251, 286, 376
TasI AATT 3 cut(s) 77, 260, 398
TfiI GAWTC 2 cut(s) 174, 425
Tru1I TTAA 3 cut(s) 26, 401, 413
Tru9I TTAA 3 cut(s) 26, 401, 413
TscAI CASTG 1 cut(s) 256
TseI GCWGC 2 cut(s) 54, 273
TspDTI ATGAA 2 cut(s) 90, 151
TspGWI ACGGA 1 cut(s) 240
TspRI CASTG 1 cut(s) 256
Tth111I GACNNNGTC 2 cut(s) 251, 286
Van91I CCANNNNNTGG 1 cut(s) 132
XbaI TCTAGA 1 cut(s) 430
XceI RCATGY 3 cut(s) 68, 144, 160
XspI CTAG 1 cut(s) 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.