Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004011

Physical Location & Seq

Genomic Coordinates Forward (+)

13978892 .. 13981705

Gene Structure 2814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G222600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGAGAAACGATGGCAGGGAGGCCCTGTTAAACCGAAACAAGTTAGGACGCTGCGTTTCTCACAAACAAGACGAGCTAAAGAGCTTTAGATCCTACATATGGTGGATGTGCGTGGACCAATCTAATGCATGGAAAGCATGTATTTCATGGAGCATTTTCATTTTGTTTGGGATCGTTGTTCCAGCCATATCCCATTTTGTGTTCGCCTGTGCCATTTGCGATGGAAAGCACAAGAGGCCTTACGATTGTGTGGTGCAATTGTCCTTGAGCAGCGTCGCGACGGTGTCCTTTTTGTGCCTCTCGTGGTTCGTCCGGAAGTTTGGGCTCCGGAGGTTCTTGTTTTTTGATAAGCTTTATAATGAGAGCGAGACGGTGAGGAGGGAATACACAGAACAGCTCAATAGATCATTGAAGCTTCTCTGCATCTTTGTCATGCCATGCTTTGCTGCGGAGAGTGCATATAAGATATGGTGGTACGCATCCGAAGCCACACAGATCCCTTTTCTAGGTAATGTTTACATGAGTGCTGCAATAGCATGCTCACTGGAGCTGTGCTCCTGGCTCTATCGTACGACCGTGTTTTTCCTCGTTTGCGTCCTGTTCCGTCTCATCTGCTACCTCCAGATCCTGCGGCTACAAGACTTTGCCACCGTGTTCCAAGTGGAATCTGATGTGGGGTCAGTGTTGTCTGAGCACCTTAGGATCAGGAGGCACCTCACCATCATAAGCCACAGATACCGTGGGTTCATATTGTGGTCGCTGATTCTGGTCACGGGGAGCCAATTTGCTTTGCTGCTCATCACAACCAGGTCCGGTGCCACTGCTAATCTTGATGTCTACAGATCTGGTGAACTTGCGTTATGCTCCATAACTTTAGTCACAGGGGTCCTCATCTTACTGCGTAGTGCAACTAAAATCACACACAAGGCCCAAGCAGTCACATGTCTCGCTACCAAGTGGCATGTTTGCGCAACTCTAGACTCGTTTGATGCAAACGAAGGAGATTCTCCAACGACTAATCCGATCGCCGCCAATGGGAGAGTGTTTCCGGTTGCCAGTAGTAGCGGAGATTCAGACAGCGATCTGGCAAGTGATGATCAAGATGAATTGGAAAATGCTAAGTTGGACCTATCATATTCATATAGTACTATCTCCTATCAAAAAAGACAAGCTCTAGTGACGTATCTTGAGAATAATAGAGCTGGTATTACAATATACGGATTTACATTCGACAGGACTACACTCCACACTATCTTTATGCTGGAGCTATCACTCATTCTTTGGTTGCTGGGAAAAACAGTTGGCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3537

Protein Analysis

437

Amino Acids

49.48

Weight (kDa)

8.52

Isoelectric Point (pI)

44.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50630 AT1G50630 AT3G20300
fragaria_vesca	FvH4_3g23460 FvH4_3g23460 FvH4_3g23460 FvH4_3g23470
malus_domestica	MD11G1210400.v1.1 MD11G1210500.v1.1
prunus_persica	Prupe.4G222500_v2.0.a1 Prupe.4G222600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0041291 RchiOBHm_Chr5g0041311
rosa_laevigata	RLG00000034048 RLG00000034049
rosa_multiflora	Rmu_co8309071.1_g000001 Rmu_sc0002715.1_g000003 Rmu_sc0015643.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039320 Rroxscaffold_1G00039330
rosa_rugosa	Rorug05G0191200 Rorug05G0191200 Rorug05G0191200
rosa_samantha	Rh5AG277400 Rh5AG277500 Rh5BG282000 Rh5BG282100 Rh5CG314300 Rh5CG314400 Rh5DG290800 Rh5DG290900
rosa_wichuraiana	Rw5G026080 Rw5G026110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	357
Acc16I	TGCGCA	1 cut(s)	970
AccB1I	GGYRCC	2 cut(s)	711, 815
AccI	GTMKAC	1 cut(s)	837
AccII	CGCG	1 cut(s)	278
AccIII	TCCGGA	2 cut(s)	312, 327
AciI	CCGC	4 cut(s)	449, 631, 1029, 1065
AclWI	GGATC	5 cut(s)	84, 179, 490, 619, 710
AfaI	GTAC	3 cut(s)	476, 571, 1147
AfiI	CCNNNNNNNGG	3 cut(s)	99, 506, 1035
AflIII	ACRYGT	1 cut(s)	941
AgsI	TTSAA	1 cut(s)	412
AjnI	CCWGG	2 cut(s)	557, 806
AluBI	AGCT	9 cut(s)	76, 84, 352, 397, 415, 550, 1172, 1202, 1267
AluI	AGCT	9 cut(s)	76, 84, 352, 397, 415, 550, 1172, 1202, 1267
Alw21I	GWGCWC	2 cut(s)	557, 696
Alw26I	GTCTC	3 cut(s)	362, 611, 950
AlwI	GGATC	5 cut(s)	84, 179, 490, 619, 710
AlwNI	CAGNNNCTG	1 cut(s)	628
Aor13HI	TCCGGA	2 cut(s)	312, 327
AoxI	GGCC	3 cut(s)	21, 236, 927
ApeKI	GCWGC	5 cut(s)	51, 270, 446, 527, 793
AspLEI	GCGC	1 cut(s)	971
AspS9I	GGNCC	6 cut(s)	22, 115, 810, 886, 928, 1126
AsuHPI	GGTGA	3 cut(s)	385, 709, 860
AvaII	GGWCC	4 cut(s)	115, 810, 886, 1126
AxyI	CCTNAGG	1 cut(s)	698
BanI	GGYRCC	2 cut(s)	711, 815
BanII	GRGCYC	1 cut(s)	327
BauI	CACGAG	1 cut(s)	301
Bbv12I	GWGCWC	2 cut(s)	557, 696
BbvI	GCAGC	5 cut(s)	38, 282, 433, 514, 780
BccI	CCATC	3 cut(s)	5, 215, 728
BciT130I	CCWGG	2 cut(s)	559, 808
BclI	TGATCA	1 cut(s)	1096
BcoDI	GTCTC	3 cut(s)	362, 611, 950
BfaI	CTAG	3 cut(s)	506, 977, 1175
BfmI	CTRYAG	1 cut(s)	838
BglII	AGATCT	1 cut(s)	842
BisI	GCNGC	7 cut(s)	52, 271, 447, 528, 632, 794, 1029
BlsI	GCNGC	7 cut(s)	53, 272, 448, 529, 633, 795, 1030
BmcAI	AGTACT	1 cut(s)	1147
Bme1390I	CCNGG	2 cut(s)	559, 808
Bme18I	GGWCC	4 cut(s)	115, 810, 886, 1126
BmgT120I	GGNCC	6 cut(s)	22, 115, 810, 886, 928, 1126
BmiI	GGNNCC	5 cut(s)	326, 713, 779, 817, 887
BmrFI	CCNGG	2 cut(s)	559, 808
BmsI	GCATC	3 cut(s)	432, 488, 979
BplI	GAGNNNNNCTC	2 cut(s)	539, 571
BpmI	CTGGAG	3 cut(s)	566, 605, 1283
BpuEI	CTTGAG	2 cut(s)	286, 1208
BsaJI	CCNNGG	1 cut(s)	739
BsaWI	WCCGGW	4 cut(s)	312, 327, 812, 1048
BsaXI	ACNNNNNCTCC	2 cut(s)	11, 41
Bsc4I	CCNNNNNNNGG	3 cut(s)	99, 506, 1035
Bse1I	ACTGG	2 cut(s)	549, 1056
Bse21I	CCTNAGG	1 cut(s)	698
BseAI	TCCGGA	2 cut(s)	312, 327
BseBI	CCWGG	2 cut(s)	559, 808
BseDI	CCNNGG	1 cut(s)	739
BseGI	GGATG	2 cut(s)	111, 479
BseLI	CCNNNNNNNGG	3 cut(s)	99, 506, 1035
BseMII	CTCAG	1 cut(s)	681
BseNI	ACTGG	2 cut(s)	549, 1056
BseRI	GAGGAG	1 cut(s)	391
BseXI	GCAGC	5 cut(s)	38, 282, 433, 514, 780
BseYI	CCCAGC	1 cut(s)	1288
Bsh1236I	CGCG	1 cut(s)	278
Bsh1285I	CGRYCG	2 cut(s)	576, 1026
BshFI	GGCC	3 cut(s)	23, 238, 929
BshNI	GGYRCC	2 cut(s)	711, 815
BsiEI	CGRYCG	2 cut(s)	576, 1026
BsiHKAI	GWGCWC	2 cut(s)	557, 696
BsiSI	CCGG	4 cut(s)	313, 328, 813, 1049
BsiWI	CGTACG	1 cut(s)	569
BslI	CCNNNNNNNGG	3 cut(s)	99, 506, 1035
BsmAI	GTCTC	3 cut(s)	362, 611, 950
BsmBI	CGTCTC	2 cut(s)	362, 611
BsnI	GGCC	3 cut(s)	23, 238, 929
Bsp1286I	GDGCHC	3 cut(s)	327, 557, 696
Bsp13I	TCCGGA	2 cut(s)	312, 327
Bsp68I	TCGCGA	1 cut(s)	278
BspACI	CCGC	4 cut(s)	449, 631, 1029, 1065
BspANI	GGCC	3 cut(s)	23, 238, 929
BspCNI	CTCAG	1 cut(s)	682
BspEI	TCCGGA	2 cut(s)	312, 327
BspFNI	CGCG	1 cut(s)	278
BspLI	GGNNCC	5 cut(s)	326, 713, 779, 817, 887
BspPI	GGATC	5 cut(s)	84, 179, 490, 619, 710
BspT107I	GGYRCC	2 cut(s)	711, 815
BsrI	ACTGG	2 cut(s)	549, 1056
BssECI	CCNNGG	1 cut(s)	739
BssSI	CACGAG	1 cut(s)	301
Bst2BI	CACGAG	1 cut(s)	301
Bst2UI	CCWGG	2 cut(s)	559, 808
Bst4CI	ACNGT	6 cut(s)	283, 373, 577, 652, 740, 1300
BstC8I	GCNNGC	1 cut(s)	538
BstDEI	CTNAG	3 cut(s)	690, 698, 1119
BstDSI	CCRYGG	1 cut(s)	739
BstENI	CCTNNNNNAGG	1 cut(s)	504
BstF5I	GGATG	2 cut(s)	111, 479
BstFNI	CGCG	1 cut(s)	278
BstHHI	GCGC	1 cut(s)	971
BstMAI	GTCTC	3 cut(s)	362, 611, 950
BstMCI	CGRYCG	2 cut(s)	576, 1026
BstMWI	GCNNNNNNNGC	5 cut(s)	134, 235, 455, 485, 533
BstNI	CCWGG	2 cut(s)	559, 808
BstNSI	RCATGY	4 cut(s)	141, 540, 945, 965
BstSCI	CCNGG	2 cut(s)	557, 806
BstSFI	CTRYAG	1 cut(s)	838
BstUI	CGCG	1 cut(s)	278
BstV1I	GCAGC	5 cut(s)	38, 282, 433, 514, 780
BstX2I	RGATCY	4 cut(s)	89, 495, 624, 842
BstYI	RGATCY	4 cut(s)	89, 495, 624, 842
Bsu36I	CCTNAGG	1 cut(s)	698
BsuRI	GGCC	3 cut(s)	23, 238, 929
BtgI	CCRYGG	1 cut(s)	739
BtgZI	GCGATG	1 cut(s)	234
BtsCI	GGATG	2 cut(s)	111, 479
BtsI	GCAGTG	1 cut(s)	819
BtsIMutI	CAGTG	3 cut(s)	542, 687, 819
BtuMI	TCGCGA	1 cut(s)	278
Cac8I	GCNNGC	1 cut(s)	538
CaiI	CAGNNNCTG	1 cut(s)	628
CfoI	GCGC	1 cut(s)	971
Cfr13I	GGNCC	6 cut(s)	22, 115, 810, 886, 928, 1126
CseI	GACGC	3 cut(s)	57, 262, 583
CsiI	ACCWGGT	1 cut(s)	806
Csp6I	GTAC	3 cut(s)	475, 570, 1146
CviAII	CATG	9 cut(s)	129, 138, 147, 433, 438, 520, 537, 942, 962
CviQI	GTAC	3 cut(s)	475, 570, 1146
DdeI	CTNAG	3 cut(s)	690, 698, 1119
Eco147I	AGGCCT	1 cut(s)	238
Eco24I	GRGCYC	1 cut(s)	327
Eco47I	GGWCC	4 cut(s)	115, 810, 886, 1126
Eco81I	CCTNAGG	1 cut(s)	698
EcoNI	CCTNNNNNAGG	1 cut(s)	504
EcoO109I	RGGNCCY	2 cut(s)	22, 886
EcoRII	CCWGG	2 cut(s)	557, 806
EcoT22I	ATGCAT	1 cut(s)	130
EcoT38I	GRGCYC	1 cut(s)	327
Esp3I	CGTCTC	2 cut(s)	362, 611
FaeI	CATG	9 cut(s)	132, 141, 150, 436, 441, 523, 540, 945, 965
FatI	CATG	9 cut(s)	128, 137, 146, 432, 437, 519, 536, 941, 961
FauNDI	CATATG	1 cut(s)	98
FbaI	TGATCA	1 cut(s)	1096
FblI	GTMKAC	1 cut(s)	837
Fnu4HI	GCNGC	7 cut(s)	52, 271, 447, 528, 632, 794, 1029
FokI	GGATG	2 cut(s)	118, 466
FriOI	GRGCYC	1 cut(s)	327
Fsp4HI	GCNGC	7 cut(s)	52, 271, 447, 528, 632, 794, 1029
FspBI	CTAG	3 cut(s)	506, 977, 1175
FspI	TGCGCA	1 cut(s)	970
GlaI	GCGC	1 cut(s)	970
GluI	GCNGC	7 cut(s)	52, 271, 447, 528, 632, 794, 1029
GsaI	CCCAGC	1 cut(s)	1292
GsuI	CTGGAG	3 cut(s)	566, 605, 1283
HaeIII	GGCC	3 cut(s)	23, 238, 929
HapII	CCGG	4 cut(s)	313, 328, 813, 1049
HgaI	GACGC	3 cut(s)	57, 262, 583
HhaI	GCGC	1 cut(s)	971
Hin1II	CATG	9 cut(s)	132, 141, 150, 436, 441, 523, 540, 945, 965
Hin6I	GCGC	1 cut(s)	969
HinP1I	GCGC	1 cut(s)	969
HindIII	AAGCTT	2 cut(s)	350, 413
HinfI	GANTC	5 cut(s)	665, 763, 980, 1004, 1070
HpaII	CCGG	4 cut(s)	313, 328, 813, 1049
HphI	GGTGA	3 cut(s)	385, 709, 860
Hpy166II	GTNNAC	4 cut(s)	115, 517, 838, 851
Hpy188I	TCNGA	5 cut(s)	484, 670, 691, 1023, 1075
Hpy188III	TCNNGA	9 cut(s)	277, 313, 328, 622, 706, 830, 977, 1100, 1187
Hpy8I	GTNNAC	4 cut(s)	115, 517, 838, 851
Hpy99I	CGWCG	2 cut(s)	278, 283
HpyAV	CCTTC	1 cut(s)	992
HpyCH4III	ACNGT	6 cut(s)	283, 373, 577, 652, 740, 1300
HpyCH4IV	ACGT	1 cut(s)	1181
HpyCH4V	TGCA	7 cut(s)	128, 256, 423, 458, 530, 908, 992
HpyF10VI	GCNNNNNNNGC	5 cut(s)	134, 235, 455, 485, 533
HpyF3I	CTNAG	3 cut(s)	690, 698, 1119
HpySE526I	ACGT	1 cut(s)	1181
Hsp92II	CATG	9 cut(s)	132, 141, 150, 436, 441, 523, 540, 945, 965
HspAI	GCGC	1 cut(s)	969
Kpn2I	TCCGGA	2 cut(s)	312, 327
Ksp22I	TGATCA	1 cut(s)	1096
LmnI	GCTCC	7 cut(s)	150, 330, 547, 560, 777, 869, 1264
Lsp1109I	GCAGC	5 cut(s)	38, 282, 433, 514, 780
LweI	GCATC	3 cut(s)	432, 488, 979
MabI	ACCWGGT	1 cut(s)	806
MaeI	CTAG	3 cut(s)	506, 977, 1175
MaeII	ACGT	1 cut(s)	1181
MaeIII	GTNAC	4 cut(s)	769, 877, 937, 1177
MfeI	CAATTG	1 cut(s)	257
MflI	RGATCY	4 cut(s)	89, 495, 624, 842
MhlI	GDGCHC	3 cut(s)	327, 557, 696
MluCI	AATT	3 cut(s)	257, 782, 1106
MlyI	GAGTC	1 cut(s)	974
MmeI	TCCRAC	2 cut(s)	1034, 1104
Mph1103I	ATGCAT	1 cut(s)	130
MroI	TCCGGA	2 cut(s)	312, 327
MseI	TTAA	2 cut(s)	29, 1309
MspI	CCGG	4 cut(s)	313, 328, 813, 1049
MspR9I	CCNGG	2 cut(s)	559, 808
MunI	CAATTG	1 cut(s)	257
MvaI	CCWGG	2 cut(s)	559, 808
MvnI	CGCG	1 cut(s)	278
MwoI	GCNNNNNNNGC	5 cut(s)	134, 235, 455, 485, 533
NdeI	CATATG	1 cut(s)	98
NlaIII	CATG	9 cut(s)	132, 141, 150, 436, 441, 523, 540, 945, 965
NlaIV	GGNNCC	5 cut(s)	326, 713, 779, 817, 887
NmuCI	GTSAC	4 cut(s)	769, 877, 937, 1177
NruI	TCGCGA	1 cut(s)	278
NsbI	TGCGCA	1 cut(s)	970
NsiI	ATGCAT	1 cut(s)	130
NspI	RCATGY	4 cut(s)	141, 540, 945, 965
PaeI	GCATGC	1 cut(s)	540
PceI	AGGCCT	1 cut(s)	238
PciI	ACATGT	1 cut(s)	941
PcsI	WCGNNNNNNNCGW	1 cut(s)	1019
PfeI	GAWTC	4 cut(s)	665, 763, 1004, 1070
Pfl23II	CGTACG	1 cut(s)	569
PflFI	GACNNNGTC	1 cut(s)	283
PkrI	GCNGC	7 cut(s)	53, 272, 448, 529, 633, 795, 1030
Ple19I	CGATCG	1 cut(s)	1026
PleI	GAGTC	1 cut(s)	974
PpsI	GAGTC	1 cut(s)	974
PpuMI	RGGWCCY	1 cut(s)	886
PscI	ACATGT	1 cut(s)	941
PsiI	TTATAA	1 cut(s)	357
Psp5II	RGGWCCY	1 cut(s)	886
Psp6I	CCWGG	2 cut(s)	557, 806
PspFI	CCCAGC	1 cut(s)	1288
PspGI	CCWGG	2 cut(s)	557, 806
PspLI	CGTACG	1 cut(s)	569
PspN4I	GGNNCC	5 cut(s)	326, 713, 779, 817, 887
PspPI	GGNCC	6 cut(s)	22, 115, 810, 886, 928, 1126
PspPPI	RGGWCCY	1 cut(s)	886
PstNI	CAGNNNCTG	1 cut(s)	628
PsuI	RGATCY	4 cut(s)	89, 495, 624, 842
PsyI	GACNNNGTC	1 cut(s)	283
PvuI	CGATCG	1 cut(s)	1026
RruI	TCGCGA	1 cut(s)	278
RsaI	GTAC	3 cut(s)	476, 571, 1147
RsaNI	GTAC	3 cut(s)	475, 570, 1146
SaqAI	TTAA	2 cut(s)	29, 1309
SatI	GCNGC	7 cut(s)	52, 271, 447, 528, 632, 794, 1029
Sau96I	GGNCC	6 cut(s)	22, 115, 810, 886, 928, 1126
ScaI	AGTACT	1 cut(s)	1147
SchI	GAGTC	1 cut(s)	974
ScrFI	CCNGG	2 cut(s)	559, 808
SduI	GDGCHC	3 cut(s)	327, 557, 696
SexAI	ACCWGGT	1 cut(s)	806
SfaNI	GCATC	3 cut(s)	432, 488, 979
SfcI	CTRYAG	1 cut(s)	838
SinI	GGWCC	4 cut(s)	115, 810, 886, 1126
SmlI	CTYRAG	2 cut(s)	265, 1187
SmoI	CTYRAG	2 cut(s)	265, 1187
SphI	GCATGC	1 cut(s)	540
Sse9I	AATT	3 cut(s)	257, 782, 1106
SseBI	AGGCCT	1 cut(s)	238
SsiI	CCGC	4 cut(s)	449, 631, 1029, 1065
SspMI	CTAG	3 cut(s)	506, 977, 1175
StuI	AGGCCT	1 cut(s)	238
StyD4I	CCNGG	2 cut(s)	557, 806
TaaI	ACNGT	6 cut(s)	283, 373, 577, 652, 740, 1300
TaiI	ACGT	1 cut(s)	1184
TaqI	TCGA	1 cut(s)	1230
TasI	AATT	3 cut(s)	257, 782, 1106
TatI	WGTACW	1 cut(s)	1145
TauI	GCSGC	2 cut(s)	634, 1031
TfiI	GAWTC	4 cut(s)	665, 763, 1004, 1070
Tru1I	TTAA	2 cut(s)	29, 1309
Tru9I	TTAA	2 cut(s)	29, 1309
TscAI	CASTG	3 cut(s)	549, 687, 826
TseFI	GTSAC	4 cut(s)	769, 877, 937, 1177
TseI	GCWGC	5 cut(s)	51, 270, 446, 527, 793
Tsp45I	GTSAC	4 cut(s)	769, 877, 937, 1177
TspDTI	ATGAA	5 cut(s)	135, 148, 736, 1119, 1128
TspGWI	ACGGA	2 cut(s)	593, 1233
TspRI	CASTG	3 cut(s)	549, 687, 826
Tth111I	GACNNNGTC	1 cut(s)	283
VpaK11BI	GGWCC	4 cut(s)	115, 810, 886, 1126
XagI	CCTNNNNNAGG	1 cut(s)	504
XbaI	TCTAGA	1 cut(s)	976
XceI	RCATGY	4 cut(s)	141, 540, 945, 965
XcmI	CCANNNNNNNNNTGG	1 cut(s)	737
XmiI	GTMKAC	1 cut(s)	837
XspI	CTAG	3 cut(s)	506, 977, 1175
ZrmI	AGTACT	1 cut(s)	1147
Zsp2I	ATGCAT	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.