Rroxscaffold_1G00039320

Protein of unknown function (DUF3537)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0004011
Physical Location & Seq
Reverse (-)
56900736 .. 56906818
6083 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00039320.1

Sequence Viewer

Length: 1083 bp
ATGGGAGACAATGGGGATGCCCTGTTAAACCGAAAGAGCAACAAGTTCCAGCGCTGCGTTTCACATGCACATGATGAATTACAGATCTTTAGATCCTACCTGCGATGGATGTTCGTGGATCAATCCAATGTTTGGAGAGCATGTCTCTCTTGGTGCATGTTCATTCTCTTTGGAATCGTTGTCCCCGCTATTTCCCATTTCGTGTTTGCCTGCGCCACCTGCGACGGAAACCACAAGAGGCCCTATGACAGTGTCGTGGAATTGTCATTGAGCAGCGTCGCGACGGTGTCATTTGTGTGCCTCTCATGGTTTGTAAGGAAGTTTGGGCTCCGAAGGTTCTTGTTTTTTGATAAGCTTTATTATGAGAGCGAAACCGTCAGGAGGGAATATACAGCACAATTAAATAGGTCATTGAAAATTCTCTCCATCTTTGTCCTACCGTGCTTTTTTGCCGAAAGTGTGTATAAGATATGGTGGTACACTTCTGGATTCTCACAAGTGCCTTTCGTGGCTAATGTTTACGTAAGTTCCACTGTAGCATGCATTCTAGAACTGTGTTCATGGCTCTACCGGACGACCGTGTTTTTCCTCGTGTGTGTTCTGTTTCGGTTGATTTGCTACCTCCAAATCTTAAGGCTTCAAGACTTTGCCACAGTGTTTCAAGTCGAATCCGACGTGGCGTCAATTATGTCCGAGCACCTTAGAATCCGAAGGCACTTAACGATCATAAGCCATAGGTTCCGGGGGTTCATATTGTGGTCTCTAACATTGATCACAGGGAGCCAATTCGCATTGTTGCTCATCACGACCAAGTCCAGTGCCGCTGTCGATTATATGCATATTTTCAGAGTTGGGGAACTTGTGACACCCATGGGGTTTGGTCCAGTGGTAGCAAGCTGGTCCTGCATGTTGGGCGAACGCTATAGTGATACTCCTGGTAGTAAGGAGCTCAATAAGGTCAGCCATGCTACCTCTCTTCTCAAAGCGGAGGCCTTGGCCGAGCTTCTCGCCATTTTACTAACTGTTAATTTGCATCTGACCTTTTTTATATTCGAATCAGACTGCATGCCAAGTAGTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3537

Protein Analysis

360

Amino Acids

41.37

Weight (kDa)

8.53

Isoelectric Point (pI)

52.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3537 PF12056 25 - 288 9.2e-110 Protein of unknown function (DUF3537)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 227
Acc36I ACCTGC 2 cut(s) 108, 227
AccB7I CCANNNNNTGG 1 cut(s) 132
AccII CGCG 1 cut(s) 281
AciI CCGC 3 cut(s) 186, 822, 986
AclWI GGATC 2 cut(s) 87, 126
AcoI YGGCCR 1 cut(s) 996
AcsI RAATTY 1 cut(s) 417
AcyI GRCGYC 1 cut(s) 680
AfaI GTAC 1 cut(s) 479
AfeI AGCGCT 1 cut(s) 53
AfiI CCNNNNNNNGG 2 cut(s) 132, 381
AflII CTTAAG 1 cut(s) 631
AgsI TTSAA 3 cut(s) 415, 641, 662
AhdI GACNNNNNGTC 1 cut(s) 679
AjiI CACGTC 1 cut(s) 676
AjnI CCWGG 1 cut(s) 934
AluBI AGCT 4 cut(s) 355, 897, 949, 1003
AluI AGCT 4 cut(s) 355, 897, 949, 1003
Alw21I GWGCWC 2 cut(s) 699, 951
Alw26I GTCTC 2 cut(s) 149, 765
AlwI GGATC 2 cut(s) 87, 126
Aor51HI AGCGCT 1 cut(s) 53
AoxI GGCC 3 cut(s) 239, 990, 996
ApeKI GCWGC 2 cut(s) 54, 273
ApoI RAATTY 1 cut(s) 417
AspLEI GCGC 2 cut(s) 54, 215
AspS9I GGNCC 3 cut(s) 240, 881, 900
AsuC2I CCSGG 1 cut(s) 743
AsuII TTCGAA 1 cut(s) 1053
AvaII GGWCC 2 cut(s) 881, 900
BanII GRGCYC 2 cut(s) 330, 951
BauI CACGAG 1 cut(s) 590
Bbv12I GWGCWC 2 cut(s) 699, 951
BbvI GCAGC 2 cut(s) 41, 285
BccI CCATC 2 cut(s) 99, 434
BciT130I CCWGG 1 cut(s) 936
BclI TGATCA 1 cut(s) 771
BcnI CCSGG 1 cut(s) 743
BcoDI GTCTC 2 cut(s) 149, 765
BfaI CTAG 1 cut(s) 548
BfmI CTRYAG 2 cut(s) 534, 922
BfoI RGCGCY 1 cut(s) 55
BfrI CTTAAG 1 cut(s) 631
BfuAI ACCTGC 2 cut(s) 108, 227
BglII AGATCT 1 cut(s) 84
BisI GCNGC 3 cut(s) 55, 274, 822
BlsI GCNGC 3 cut(s) 56, 275, 823
Bme1390I CCNGG 2 cut(s) 743, 936
Bme18I GGWCC 2 cut(s) 881, 900
BmeRI GACNNNNNGTC 1 cut(s) 679
BmgBI CACGTC 1 cut(s) 676
BmgT120I GGNCC 3 cut(s) 240, 881, 900
BmiI GGNNCC 3 cut(s) 329, 740, 782
BmrFI CCNGG 2 cut(s) 743, 936
BmsI GCATC 2 cut(s) 7, 1042
BplI GAGNNNNNCTC 2 cut(s) 129, 161
Bpu14I TTCGAA 1 cut(s) 1053
BpuMI CCSGG 1 cut(s) 743
BsaAI YACGTR 1 cut(s) 523
BsaHI GRCGYC 1 cut(s) 680
BsaI GGTCTC 1 cut(s) 765
BsaJI CCNNGG 3 cut(s) 742, 870, 993
BsaWI WCCGGW 1 cut(s) 570
BsaXI ACNNNNNCTCC 2 cut(s) 127, 157
Bsc4I CCNNNNNNNGG 2 cut(s) 132, 381
Bse1I ACTGG 2 cut(s) 816, 884
BseBI CCWGG 1 cut(s) 936
BseDI CCNNGG 3 cut(s) 742, 870, 993
BseGI GGATG 2 cut(s) 22, 114
BseLI CCNNNNNNNGG 2 cut(s) 132, 381
BseNI ACTGG 2 cut(s) 816, 884
BseXI GCAGC 2 cut(s) 41, 285
Bsh1236I CGCG 1 cut(s) 281
Bsh1285I CGRYCG 1 cut(s) 579
BshFI GGCC 3 cut(s) 241, 992, 998
BsiEI CGRYCG 1 cut(s) 579
BsiHKAI GWGCWC 2 cut(s) 699, 951
BsiSI CCGG 2 cut(s) 571, 742
BslFI GGGAC 1 cut(s) 167
BslI CCNNNNNNNGG 2 cut(s) 132, 381
BsmAI GTCTC 2 cut(s) 149, 765
BsmFI GGGAC 1 cut(s) 167
BsmI GAATGC 1 cut(s) 543
BsnI GGCC 3 cut(s) 241, 992, 998
Bso31I GGTCTC 1 cut(s) 765
Bsp119I TTCGAA 1 cut(s) 1053
Bsp1286I GDGCHC 3 cut(s) 330, 699, 951
Bsp143I GATC 5 cut(s) 84, 92, 118, 723, 771
Bsp19I CCATGG 1 cut(s) 870
Bsp68I TCGCGA 1 cut(s) 281
BspACI CCGC 3 cut(s) 186, 822, 986
BspANI GGCC 3 cut(s) 241, 992, 998
BspFNI CGCG 1 cut(s) 281
BspLI GGNNCC 3 cut(s) 329, 740, 782
BspMI ACCTGC 2 cut(s) 108, 227
BspPI GGATC 2 cut(s) 87, 126
BspT104I TTCGAA 1 cut(s) 1053
BspTI CTTAAG 1 cut(s) 631
BspTNI GGTCTC 1 cut(s) 765
BsrI ACTGG 2 cut(s) 816, 884
BssECI CCNNGG 3 cut(s) 742, 870, 993
BssMI GATC 5 cut(s) 84, 92, 118, 723, 771
BssNI GRCGYC 1 cut(s) 680
BssSI CACGAG 1 cut(s) 590
BssT1I CCWWGG 2 cut(s) 870, 993
Bst2BI CACGAG 1 cut(s) 590
Bst2UI CCWGG 1 cut(s) 936
Bst4CI ACNGT 9 cut(s) 251, 286, 376, 441, 535, 555, 580, 655, 1024
Bst6I CTCTTC 1 cut(s) 981
BstACI GRCGYC 1 cut(s) 680
BstAFI CTTAAG 1 cut(s) 631
BstBAI YACGTR 1 cut(s) 523
BstBI TTCGAA 1 cut(s) 1053
BstC8I GCNNGC 4 cut(s) 211, 541, 895, 1067
BstDEI CTNAG 1 cut(s) 701
BstDSI CCRYGG 1 cut(s) 870
BstF5I GGATG 2 cut(s) 22, 114
BstFNI CGCG 1 cut(s) 281
BstH2I RGCGCY 1 cut(s) 55
BstHHI GCGC 2 cut(s) 54, 215
BstKTI GATC 5 cut(s) 87, 95, 121, 726, 774
BstMAI GTCTC 2 cut(s) 149, 765
BstMBI GATC 5 cut(s) 84, 92, 118, 723, 771
BstMCI CGRYCG 1 cut(s) 579
BstMWI GCNNNNNNNGC 3 cut(s) 219, 903, 912
BstNI CCWGG 1 cut(s) 936
BstNSI RCATGY 6 cut(s) 68, 144, 160, 543, 910, 1069
BstSCI CCNGG 2 cut(s) 741, 934
BstSFI CTRYAG 2 cut(s) 534, 922
BstSNI TACGTA 1 cut(s) 523
BstUI CGCG 1 cut(s) 281
BstV1I GCAGC 2 cut(s) 41, 285
BstX2I RGATCY 2 cut(s) 84, 92
BstYI RGATCY 2 cut(s) 84, 92
BsuRI GGCC 3 cut(s) 241, 992, 998
BtgI CCRYGG 1 cut(s) 870
BtgZI GCGATG 1 cut(s) 118
BtrI CACGTC 1 cut(s) 676
BtsCI GGATG 2 cut(s) 22, 114
BtsIMutI CAGTG 5 cut(s) 256, 531, 660, 823, 891
BtuMI TCGCGA 1 cut(s) 281
BveI ACCTGC 2 cut(s) 108, 227
Cac8I GCNNGC 4 cut(s) 211, 541, 895, 1067
CfoI GCGC 2 cut(s) 54, 215
Cfr13I GGNCC 3 cut(s) 240, 881, 900
CseI GACGC 2 cut(s) 265, 669
Csp6I GTAC 1 cut(s) 478
CviQI GTAC 1 cut(s) 478
DdeI CTNAG 1 cut(s) 701
DpnI GATC 5 cut(s) 86, 94, 120, 725, 773
DpnII GATC 5 cut(s) 84, 92, 118, 723, 771
DriI GACNNNNNGTC 1 cut(s) 679
EaeI YGGCCR 1 cut(s) 996
Eam1104I CTCTTC 1 cut(s) 981
Eam1105I GACNNNNNGTC 1 cut(s) 679
EarI CTCTTC 1 cut(s) 981
Ecl136II GAGCTC 1 cut(s) 949
Eco105I TACGTA 1 cut(s) 523
Eco130I CCWWGG 2 cut(s) 870, 993
Eco147I AGGCCT 1 cut(s) 992
Eco24I GRGCYC 2 cut(s) 330, 951
Eco31I GGTCTC 1 cut(s) 765
Eco47I GGWCC 2 cut(s) 881, 900
Eco47III AGCGCT 1 cut(s) 53
Eco53kI GAGCTC 1 cut(s) 949
EcoICRI GAGCTC 1 cut(s) 949
EcoO109I RGGNCCY 1 cut(s) 240
EcoRII CCWGG 1 cut(s) 934
EcoT14I CCWWGG 2 cut(s) 870, 993
EcoT22I ATGCAT 2 cut(s) 545, 840
EcoT38I GRGCYC 2 cut(s) 330, 951
ErhI CCWWGG 2 cut(s) 870, 993
FaqI GGGAC 1 cut(s) 167
FauI CCCGC 1 cut(s) 193
FbaI TGATCA 1 cut(s) 771
Fnu4HI GCNGC 3 cut(s) 55, 274, 822
FokI GGATG 2 cut(s) 29, 121
FriOI GRGCYC 2 cut(s) 330, 951
Fsp4HI GCNGC 3 cut(s) 55, 274, 822
FspBI CTAG 1 cut(s) 548
GlaI GCGC 2 cut(s) 53, 214
GluI GCNGC 3 cut(s) 55, 274, 822
HaeII RGCGCY 1 cut(s) 55
HaeIII GGCC 3 cut(s) 241, 992, 998
HapII CCGG 2 cut(s) 571, 742
HgaI GACGC 2 cut(s) 265, 669
HhaI GCGC 2 cut(s) 54, 215
Hin1I GRCGYC 1 cut(s) 680
Hin6I GCGC 2 cut(s) 52, 213
HinP1I GCGC 2 cut(s) 52, 213
HindIII AAGCTT 1 cut(s) 353
HinfI GANTC 5 cut(s) 174, 489, 668, 705, 1055
HpaII CCGG 2 cut(s) 571, 742
Hpy166II GTNNAC 2 cut(s) 480, 520
Hpy188I TCNGA 7 cut(s) 332, 673, 694, 710, 848, 1038, 1060
Hpy188III TCNNGA 6 cut(s) 280, 379, 486, 548, 641, 805
Hpy8I GTNNAC 2 cut(s) 480, 520
Hpy99I CGWCG 4 cut(s) 227, 281, 286, 677
HpyAV CCTTC 2 cut(s) 327, 705
HpyCH4III ACNGT 9 cut(s) 251, 286, 376, 441, 535, 555, 580, 655, 1024
HpyCH4IV ACGT 2 cut(s) 522, 675
HpyCH4V TGCA 7 cut(s) 68, 156, 543, 838, 906, 1033, 1065
HpyF10VI GCNNNNNNNGC 3 cut(s) 219, 903, 912
HpyF3I CTNAG 1 cut(s) 701
HpySE526I ACGT 2 cut(s) 522, 675
Hsp92I GRCGYC 1 cut(s) 680
HspAI GCGC 2 cut(s) 52, 213
Ksp22I TGATCA 1 cut(s) 771
Kzo9I GATC 5 cut(s) 84, 92, 118, 723, 771
LmnI GCTCC 3 cut(s) 333, 780, 946
Lsp1109I GCAGC 2 cut(s) 41, 285
LweI GCATC 2 cut(s) 7, 1042
MaeI CTAG 1 cut(s) 548
MaeII ACGT 2 cut(s) 522, 675
MaeIII GTNAC 1 cut(s) 862
MalI GATC 5 cut(s) 86, 94, 120, 725, 773
MboI GATC 5 cut(s) 84, 92, 118, 723, 771
MboII GAAGA 1 cut(s) 968
MflI RGATCY 2 cut(s) 84, 92
MhlI GDGCHC 3 cut(s) 330, 699, 951
MluCI AATT 7 cut(s) 77, 260, 398, 417, 684, 785, 1027
MmeI TCCRAC 1 cut(s) 696
MnlI CCTC 7 cut(s) 231, 311, 375, 599, 632, 982, 982
Mph1103I ATGCAT 2 cut(s) 545, 840
MseI TTAA 6 cut(s) 26, 401, 632, 719, 1026, 1081
MslI CAYNNNNRTG 2 cut(s) 69, 295
MspA1I CMGCKG 1 cut(s) 824
MspCI CTTAAG 1 cut(s) 631
MspI CCGG 2 cut(s) 571, 742
MspR9I CCNGG 2 cut(s) 743, 936
Mva1269I GAATGC 1 cut(s) 543
MvaI CCWGG 1 cut(s) 936
MvnI CGCG 1 cut(s) 281
MwoI GCNNNNNNNGC 3 cut(s) 219, 903, 912
NciI CCSGG 1 cut(s) 743
NcoI CCATGG 1 cut(s) 870
NdeII GATC 5 cut(s) 84, 92, 118, 723, 771
NlaIV GGNNCC 3 cut(s) 329, 740, 782
NmeAIII GCCGAG 1 cut(s) 1024
NmuCI GTSAC 1 cut(s) 862
NruI TCGCGA 1 cut(s) 281
NsiI ATGCAT 2 cut(s) 545, 840
NspI RCATGY 6 cut(s) 68, 144, 160, 543, 910, 1069
NspV TTCGAA 1 cut(s) 1053
PaeI GCATGC 2 cut(s) 543, 1069
PaqCI CACCTGC 1 cut(s) 227
PceI AGGCCT 1 cut(s) 992
PcsI WCGNNNNNNNCGW 1 cut(s) 672
PctI GAATGC 1 cut(s) 543
PfeI GAWTC 5 cut(s) 174, 489, 668, 705, 1055
PflFI GACNNNGTC 3 cut(s) 251, 286, 811
PflMI CCANNNNNTGG 1 cut(s) 132
PkrI GCNGC 3 cut(s) 56, 275, 823
Ppu21I YACGTR 1 cut(s) 523
Psp124BI GAGCTC 1 cut(s) 951
Psp6I CCWGG 1 cut(s) 934
PspGI CCWGG 1 cut(s) 934
PspN4I GGNNCC 3 cut(s) 329, 740, 782
PspPI GGNCC 3 cut(s) 240, 881, 900
PsuI RGATCY 2 cut(s) 84, 92
PsyI GACNNNGTC 3 cut(s) 251, 286, 811
RruI TCGCGA 1 cut(s) 281
RsaI GTAC 1 cut(s) 479
RsaNI GTAC 1 cut(s) 478
RseI CAYNNNNRTG 2 cut(s) 69, 295
SacI GAGCTC 1 cut(s) 951
SaqAI TTAA 6 cut(s) 26, 401, 632, 719, 1026, 1081
SatI GCNGC 3 cut(s) 55, 274, 822
Sau3AI GATC 5 cut(s) 84, 92, 118, 723, 771
Sau96I GGNCC 3 cut(s) 240, 881, 900
ScrFI CCNGG 2 cut(s) 743, 936
SduI GDGCHC 3 cut(s) 330, 699, 951
SfaNI GCATC 2 cut(s) 7, 1042
SfcI CTRYAG 2 cut(s) 534, 922
SfuI TTCGAA 1 cut(s) 1053
SinI GGWCC 2 cut(s) 881, 900
SmiMI CAYNNNNRTG 2 cut(s) 69, 295
SmlI CTYRAG 1 cut(s) 631
SmoI CTYRAG 1 cut(s) 631
SnaBI TACGTA 1 cut(s) 523
SphI GCATGC 2 cut(s) 543, 1069
Sse9I AATT 7 cut(s) 77, 260, 398, 417, 684, 785, 1027
SseBI AGGCCT 1 cut(s) 992
SsiI CCGC 3 cut(s) 186, 822, 986
SspMI CTAG 1 cut(s) 548
SstI GAGCTC 1 cut(s) 951
StuI AGGCCT 1 cut(s) 992
StyD4I CCNGG 2 cut(s) 741, 934
StyI CCWWGG 2 cut(s) 870, 993
TaaI ACNGT 9 cut(s) 251, 286, 376, 441, 535, 555, 580, 655, 1024
TaiI ACGT 2 cut(s) 525, 678
TaqI TCGA 3 cut(s) 666, 828, 1053
TasI AATT 7 cut(s) 77, 260, 398, 417, 684, 785, 1027
TauI GCSGC 1 cut(s) 824
TfiI GAWTC 5 cut(s) 174, 489, 668, 705, 1055
Tru1I TTAA 6 cut(s) 26, 401, 632, 719, 1026, 1081
Tru9I TTAA 6 cut(s) 26, 401, 632, 719, 1026, 1081
TscAI CASTG 5 cut(s) 256, 538, 660, 823, 891
TseFI GTSAC 1 cut(s) 862
TseI GCWGC 2 cut(s) 54, 273
Tsp45I GTSAC 1 cut(s) 862
TspDTI ATGAA 4 cut(s) 90, 151, 549, 739
TspGWI ACGGA 1 cut(s) 240
TspRI CASTG 5 cut(s) 256, 538, 660, 823, 891
Tth111I GACNNNGTC 3 cut(s) 251, 286, 811
Van91I CCANNNNNTGG 1 cut(s) 132
Vha464I CTTAAG 1 cut(s) 631
VpaK11BI GGWCC 2 cut(s) 881, 900
XapI RAATTY 1 cut(s) 417
XbaI TCTAGA 1 cut(s) 547
XceI RCATGY 6 cut(s) 68, 144, 160, 543, 910, 1069
XspI CTAG 1 cut(s) 548
Zsp2I ATGCAT 2 cut(s) 545, 840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.