Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015643.1

Orthogroup ID

OG0004011

Physical Location & Seq

Genomic Coordinates Forward (+)

291 .. 1365

Gene Structure 1075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015643.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

atggcatgcataatggagctattctcctggctctatcgcacgaccgtgattttcctcgtgtgtgttctcttccgtctcatatgctaccttcaaatcctacggctacaagattttgccacaatgttcgaagtggactctgatgtcggatcagtgttatcggagcaccttaggatccgaaggcacctgaggatcataagccacaggtgccgcgatttcgtattgtggaaactcattttggtcacggggagccaatttgctctgttgctcatcacaaccagttccagtgctattgccaaccttgatatttgcacagctggagaacttctgttttgctccataactctagttaccgggctcctcatcgtgctgcgcagtgcaaccaaaatcacacacaaggcgcaagcagtcacatgtcttgctgccaaatggcatgtctgtgccacattagattcgtttgatgcaacaacggctcagatcgccagtaacggccgagtgttccttgcagaatccgataacgatgaggctgaggacgaggctgaggatgaagaagatgaattggacaacagcaaattgataccatcatatgcatatagtaccatctcttatcagaaaagacaagctctagtgacatatttcgagaacaacagagccggcattactgtttacgggtttacattggacaggactacgctacacatgttatttatgatcgaattttcattaattctctggttgttggggaagaccattaatggaatttcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3537

Protein Analysis

254

Amino Acids

28.7

Weight (kDa)

5.36

Isoelectric Point (pI)

37.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50630 AT1G50630 AT3G20300
fragaria_vesca	FvH4_3g23460 FvH4_3g23460 FvH4_3g23460 FvH4_3g23470
malus_domestica	MD11G1210400.v1.1 MD11G1210500.v1.1
prunus_persica	Prupe.4G222500_v2.0.a1 Prupe.4G222600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0041291 RchiOBHm_Chr5g0041311
rosa_laevigata	RLG00000034048 RLG00000034049
rosa_multiflora	Rmu_co8309071.1_g000001 Rmu_sc0002715.1_g000003 Rmu_sc0015643.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039320 Rroxscaffold_1G00039330
rosa_rugosa	Rorug05G0191200 Rorug05G0191200 Rorug05G0191200
rosa_samantha	Rh5AG277400 Rh5AG277500 Rh5BG282000 Rh5BG282100 Rh5CG314300 Rh5CG314400 Rh5DG290800 Rh5DG290900
rosa_wichuraiana	Rw5G026080 Rw5G026110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	140
Acc16I	TGCGCA	1 cut(s)	371
AccB1I	GGYRCC	2 cut(s)	180, 204
AccII	CGCG	1 cut(s)	210
AciI	CCGC	1 cut(s)	208
AclWI	GGATC	4 cut(s)	154, 166, 179, 197
AcoI	YGGCCR	1 cut(s)	487
AcsI	RAATTY	2 cut(s)	713, 756
AfaI	GTAC	1 cut(s)	595
AflIII	ACRYGT	2 cut(s)	410, 696
AgsI	TTSAA	1 cut(s)	92
AjnI	CCWGG	1 cut(s)	26
AjuI	GAANNNNNNNTTGG	2 cut(s)	218, 250
AleI	CACNNNNGTG	1 cut(s)	44
AluBI	AGCT	3 cut(s)	19, 314, 620
AluI	AGCT	3 cut(s)	19, 314, 620
Alw21I	GWGCWC	1 cut(s)	165
Alw26I	GTCTC	1 cut(s)	80
AlwI	GGATC	4 cut(s)	154, 166, 179, 197
AoxI	GGCC	1 cut(s)	487
ApeKI	GCWGC	2 cut(s)	367, 419
ApoI	RAATTY	2 cut(s)	713, 756
ArsI	GACNNNNNNTTYG	2 cut(s)	417, 449
AseI	ATTAAT	2 cut(s)	722, 750
AspLEI	GCGC	2 cut(s)	372, 400
AsuC2I	CCSGG	1 cut(s)	352
AsuII	TTCGAA	1 cut(s)	126
AxyI	CCTNAGG	2 cut(s)	167, 185
BamHI	GGATCC	1 cut(s)	171
BanI	GGYRCC	2 cut(s)	180, 204
BanII	GRGCYC	1 cut(s)	357
BauI	CACGAG	1 cut(s)	56
BbsI	GAAGAC	1 cut(s)	749
Bbv12I	GWGCWC	1 cut(s)	165
BbvCI	CCTCAGC	2 cut(s)	525, 537
BbvI	GCAGC	2 cut(s)	354, 406
BccI	CCATC	2 cut(s)	586, 605
BceAI	ACGGC	3 cut(s)	116, 483, 502
BciT130I	CCWGG	1 cut(s)	28
BcnI	CCSGG	1 cut(s)	352
BcoDI	GTCTC	1 cut(s)	80
BfaI	CTAG	2 cut(s)	344, 623
BisI	GCNGC	3 cut(s)	208, 368, 420
BlsI	GCNGC	3 cut(s)	209, 369, 421
Bme1390I	CCNGG	2 cut(s)	28, 352
BmiI	GGNNCC	5 cut(s)	173, 182, 206, 248, 356
BmrFI	CCNGG	2 cut(s)	28, 352
BmsI	GCATC	1 cut(s)	448
BpiI	GAAGAC	1 cut(s)	749
BplI	GAGNNNNNCTC	2 cut(s)	8, 40
BpmI	CTGGAG	1 cut(s)	336
Bpu10I	CCTNAGC	2 cut(s)	525, 537
Bpu14I	TTCGAA	1 cut(s)	126
BpuMI	CCSGG	1 cut(s)	352
Bse118I	RCCGGY	1 cut(s)	650
Bse1I	ACTGG	3 cut(s)	276, 282, 480
Bse21I	CCTNAGG	2 cut(s)	167, 185
BseBI	CCWGG	1 cut(s)	28
BseGI	GGATG	1 cut(s)	547
BseMII	CTCAG	4 cut(s)	176, 485, 516, 528
BseNI	ACTGG	3 cut(s)	276, 282, 480
BseRI	GAGGAG	1 cut(s)	347
BseX3I	CGGCCG	1 cut(s)	487
BseXI	GCAGC	2 cut(s)	354, 406
Bsh1236I	CGCG	1 cut(s)	210
Bsh1285I	CGRYCG	2 cut(s)	45, 490
BshFI	GGCC	1 cut(s)	489
BshNI	GGYRCC	2 cut(s)	180, 204
BsiEI	CGRYCG	2 cut(s)	45, 490
BsiHKAI	GWGCWC	1 cut(s)	165
BsiSI	CCGG	2 cut(s)	351, 651
BsmAI	GTCTC	1 cut(s)	80
BsmBI	CGTCTC	1 cut(s)	80
BsnI	GGCC	1 cut(s)	489
Bsp119I	TTCGAA	1 cut(s)	126
Bsp1286I	GDGCHC	2 cut(s)	165, 357
Bsp143I	GATC	5 cut(s)	146, 171, 189, 474, 708
BspACI	CCGC	1 cut(s)	208
BspANI	GGCC	1 cut(s)	489
BspCNI	CTCAG	4 cut(s)	177, 484, 517, 529
BspFNI	CGCG	1 cut(s)	210
BspLI	GGNNCC	5 cut(s)	173, 182, 206, 248, 356
BspPI	GGATC	4 cut(s)	154, 166, 179, 197
BspT104I	TTCGAA	1 cut(s)	126
BspT107I	GGYRCC	2 cut(s)	180, 204
BsrFI	RCCGGY	1 cut(s)	650
BsrI	ACTGG	3 cut(s)	276, 282, 480
BssAI	RCCGGY	1 cut(s)	650
BssMI	GATC	5 cut(s)	146, 171, 189, 474, 708
BssSI	CACGAG	1 cut(s)	56
Bst2BI	CACGAG	1 cut(s)	56
Bst2UI	CCWGG	1 cut(s)	28
Bst4CI	ACNGT	2 cut(s)	46, 661
Bst6I	CTCTTC	1 cut(s)	74
BstBI	TTCGAA	1 cut(s)	126
BstC8I	GCNNGC	3 cut(s)	7, 402, 652
BstDEI	CTNAG	5 cut(s)	167, 185, 471, 525, 537
BstF5I	GGATG	1 cut(s)	547
BstFNI	CGCG	1 cut(s)	210
BstHHI	GCGC	2 cut(s)	372, 400
BstKTI	GATC	5 cut(s)	149, 174, 192, 477, 711
BstMAI	GTCTC	1 cut(s)	80
BstMBI	GATC	5 cut(s)	146, 171, 189, 474, 708
BstMCI	CGRYCG	2 cut(s)	45, 490
BstMWI	GCNNNNNNNGC	3 cut(s)	204, 467, 476
BstNI	CCWGG	1 cut(s)	28
BstNSI	RCATGY	4 cut(s)	9, 414, 434, 700
BstSCI	CCNGG	2 cut(s)	26, 350
BstUI	CGCG	1 cut(s)	210
BstV1I	GCAGC	2 cut(s)	354, 406
BstV2I	GAAGAC	1 cut(s)	749
BstX2I	RGATCY	1 cut(s)	171
BstYI	RGATCY	1 cut(s)	171
BstZI	CGGCCG	1 cut(s)	487
Bsu36I	CCTNAGG	2 cut(s)	167, 185
BsuRI	GGCC	1 cut(s)	489
BtsCI	GGATG	1 cut(s)	547
BtsI	GCAGTG	1 cut(s)	379
BtsIMutI	CAGTG	3 cut(s)	156, 289, 379
Cac8I	GCNNGC	3 cut(s)	7, 402, 652
CfoI	GCGC	2 cut(s)	372, 400
Cfr10I	RCCGGY	1 cut(s)	650
Csp6I	GTAC	1 cut(s)	594
CviAII	CATG	4 cut(s)	6, 411, 431, 697
CviQI	GTAC	1 cut(s)	594
DdeI	CTNAG	5 cut(s)	167, 185, 471, 525, 537
DpnI	GATC	5 cut(s)	148, 173, 191, 476, 710
DpnII	GATC	5 cut(s)	146, 171, 189, 474, 708
DrdI	GACNNNNNNGTC	1 cut(s)	140
DseDI	GACNNNNNNGTC	1 cut(s)	140
EaeI	YGGCCR	1 cut(s)	487
EagI	CGGCCG	1 cut(s)	487
Eam1104I	CTCTTC	1 cut(s)	74
EarI	CTCTTC	1 cut(s)	74
EclXI	CGGCCG	1 cut(s)	487
Eco24I	GRGCYC	1 cut(s)	357
Eco52I	CGGCCG	1 cut(s)	487
Eco81I	CCTNAGG	2 cut(s)	167, 185
EcoRII	CCWGG	1 cut(s)	26
EcoT22I	ATGCAT	2 cut(s)	11, 589
EcoT38I	GRGCYC	1 cut(s)	357
Esp3I	CGTCTC	1 cut(s)	80
FaeI	CATG	4 cut(s)	9, 414, 434, 700
FatI	CATG	4 cut(s)	5, 410, 430, 696
FauNDI	CATATG	2 cut(s)	80, 583
Fnu4HI	GCNGC	3 cut(s)	208, 368, 420
FokI	GGATG	1 cut(s)	554
FriOI	GRGCYC	1 cut(s)	357
Fsp4HI	GCNGC	3 cut(s)	208, 368, 420
FspBI	CTAG	2 cut(s)	344, 623
FspI	TGCGCA	1 cut(s)	371
GlaI	GCGC	2 cut(s)	371, 399
GluI	GCNGC	3 cut(s)	208, 368, 420
GsuI	CTGGAG	1 cut(s)	336
HaeIII	GGCC	1 cut(s)	489
HapII	CCGG	2 cut(s)	351, 651
HhaI	GCGC	2 cut(s)	372, 400
Hin1II	CATG	4 cut(s)	9, 414, 434, 700
Hin6I	GCGC	2 cut(s)	370, 398
HinP1I	GCGC	2 cut(s)	370, 398
HinfI	GANTC	3 cut(s)	134, 449, 506
HpaII	CCGG	2 cut(s)	351, 651
Hpy166II	GTNNAC	3 cut(s)	133, 664, 672
Hpy188I	TCNGA	7 cut(s)	139, 146, 160, 176, 474, 511, 609
Hpy188III	TCNNGA	1 cut(s)	637
Hpy8I	GTNNAC	3 cut(s)	133, 664, 672
HpyAV	CCTTC	2 cut(s)	98, 171
HpyCH4III	ACNGT	2 cut(s)	46, 661
HpyCH4V	TGCA	6 cut(s)	9, 309, 377, 461, 503, 587
HpyF10VI	GCNNNNNNNGC	3 cut(s)	204, 467, 476
HpyF3I	CTNAG	5 cut(s)	167, 185, 471, 525, 537
Hsp92II	CATG	4 cut(s)	9, 414, 434, 700
HspAI	GCGC	2 cut(s)	370, 398
KroI	GCCGGC	1 cut(s)	650
KroNI	GCCGGC	1 cut(s)	652
Kzo9I	GATC	5 cut(s)	146, 171, 189, 474, 708
LmnI	GCTCC	5 cut(s)	16, 160, 246, 338, 360
Lsp1109I	GCAGC	2 cut(s)	354, 406
LweI	GCATC	1 cut(s)	448
MaeI	CTAG	2 cut(s)	344, 623
MaeIII	GTNAC	5 cut(s)	238, 346, 406, 482, 625
MalI	GATC	5 cut(s)	148, 173, 191, 476, 710
MboI	GATC	5 cut(s)	146, 171, 189, 474, 708
MboII	GAAGA	4 cut(s)	61, 557, 560, 754
MflI	RGATCY	1 cut(s)	171
MhlI	GDGCHC	2 cut(s)	165, 357
MluCI	AATT	6 cut(s)	251, 554, 569, 713, 723, 756
MlyI	GAGTC	1 cut(s)	128
MmeI	TCCRAC	1 cut(s)	124
MnlI	CCTC	7 cut(s)	65, 180, 368, 514, 520, 526, 532
Mph1103I	ATGCAT	2 cut(s)	11, 589
MroNI	GCCGGC	1 cut(s)	650
MseI	TTAA	3 cut(s)	722, 750, 763
MslI	CAYNNNNRTG	2 cut(s)	44, 435
MspA1I	CMGCKG	1 cut(s)	314
MspI	CCGG	2 cut(s)	351, 651
MspR9I	CCNGG	2 cut(s)	28, 352
MvaI	CCWGG	1 cut(s)	28
MvnI	CGCG	1 cut(s)	210
MwoI	GCNNNNNNNGC	3 cut(s)	204, 467, 476
NaeI	GCCGGC	1 cut(s)	652
NciI	CCSGG	1 cut(s)	352
NdeI	CATATG	2 cut(s)	80, 583
NdeII	GATC	5 cut(s)	146, 171, 189, 474, 708
NgoMIV	GCCGGC	1 cut(s)	650
NlaIII	CATG	4 cut(s)	9, 414, 434, 700
NlaIV	GGNNCC	5 cut(s)	173, 182, 206, 248, 356
NmeAIII	GCCGAG	1 cut(s)	515
NmuCI	GTSAC	3 cut(s)	238, 406, 625
NsbI	TGCGCA	1 cut(s)	371
NsiI	ATGCAT	2 cut(s)	11, 589
NspI	RCATGY	4 cut(s)	9, 414, 434, 700
NspV	TTCGAA	1 cut(s)	126
OliI	CACNNNNGTG	1 cut(s)	44
PaeI	GCATGC	1 cut(s)	9
PciI	ACATGT	2 cut(s)	410, 696
PdiI	GCCGGC	1 cut(s)	652
PfeI	GAWTC	2 cut(s)	449, 506
PkrI	GCNGC	3 cut(s)	209, 369, 421
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
PscI	ACATGT	2 cut(s)	410, 696
PshBI	ATTAAT	2 cut(s)	722, 750
Psp6I	CCWGG	1 cut(s)	26
PspGI	CCWGG	1 cut(s)	26
PspN4I	GGNNCC	5 cut(s)	173, 182, 206, 248, 356
PsuI	RGATCY	1 cut(s)	171
PvuII	CAGCTG	1 cut(s)	314
RsaI	GTAC	1 cut(s)	595
RsaNI	GTAC	1 cut(s)	594
RseI	CAYNNNNRTG	2 cut(s)	44, 435
SaqAI	TTAA	3 cut(s)	722, 750, 763
SatI	GCNGC	3 cut(s)	208, 368, 420
Sau3AI	GATC	5 cut(s)	146, 171, 189, 474, 708
SchI	GAGTC	1 cut(s)	128
ScrFI	CCNGG	2 cut(s)	28, 352
SduI	GDGCHC	2 cut(s)	165, 357
SetI	ASST	8 cut(s)	21, 90, 168, 186, 206, 300, 316, 622
SfaNI	GCATC	1 cut(s)	448
SfuI	TTCGAA	1 cut(s)	126
SmiMI	CAYNNNNRTG	2 cut(s)	44, 435
SphI	GCATGC	1 cut(s)	9
Sse9I	AATT	6 cut(s)	251, 554, 569, 713, 723, 756
SsiI	CCGC	1 cut(s)	208
SspMI	CTAG	2 cut(s)	344, 623
StyD4I	CCNGG	2 cut(s)	26, 350
TaaI	ACNGT	2 cut(s)	46, 661
TaqI	TCGA	3 cut(s)	126, 636, 711
TasI	AATT	6 cut(s)	251, 554, 569, 713, 723, 756
TauI	GCSGC	1 cut(s)	210
TfiI	GAWTC	2 cut(s)	449, 506
Tru1I	TTAA	3 cut(s)	722, 750, 763
Tru9I	TTAA	3 cut(s)	722, 750, 763
TscAI	CASTG	3 cut(s)	156, 289, 379
TseFI	GTSAC	3 cut(s)	238, 406, 625
TseI	GCWGC	2 cut(s)	367, 419
Tsp45I	GTSAC	3 cut(s)	238, 406, 625
TspDTI	ATGAA	3 cut(s)	558, 567, 708
TspGWI	ACGGA	1 cut(s)	62
TspRI	CASTG	3 cut(s)	156, 289, 379
VspI	ATTAAT	2 cut(s)	722, 750
XapI	RAATTY	2 cut(s)	713, 756
XceI	RCATGY	4 cut(s)	9, 414, 434, 700
XspI	CTAG	2 cut(s)	344, 623
Zsp2I	ATGCAT	2 cut(s)	11, 589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.