FvH4_3g27110

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0016796
Physical Location & Seq
Forward (+)
20199618 .. 20201580
1963 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g27110.t1

Sequence Viewer

Length: 924 bp
ATGGGAAGCATTGAACCACAGGGAGCAGGGAGGTACGCGGTGGTTACCGGAGCAAACAAGGGTATCGGGTTTGAGGTGGTGCGGCAACTGGCTTGCCGAGGCGTGGTGGTGGTGTTGACGGCGAGGGATGAGAAAAGGGGAAGGGAGGCCACTGCCAAGCTCCACCATGACCATCATCTTCATGCCAATGTACTCTTCCATCAGCTTGATGTCACAGATCCACTCAGTGTGCAATCTTTGGCTAACTTCACCCGTGACACCTTCGGCAGGCTTGATATCTTGGTTAACAATGCTGGAGCTAGTGGAGTTTTGGTCGATGAGGAAGAACTCAAAGCCCTGAACATTGATCCCACCACTTGGCTTTCAGGTCAAGCAGTCAACAAAATTCAAGGTTGTATAAAACATACTTACGACAAGGCTGAGGAATGCTTGAACACTAATTACTATGGTGTCAAAAGAGTGACAGAGGCACTTCTCCCACTCTTGAAACTCTCTACTGCAGGAGCAAGGATTGTCAATGTCTCCTCTCTCAGGAGTGAACTCAAGAGGATTCCAAGTGAAGAGATAAGAAATGAACTTGGTAATGTAGAAGCATTGACAGAGGAGAAAGTGGATGCAGTTCTCAGAAGATTTCTGCATGATTTCAAAGAAAACTCACTTGAAGCCAATGGATGGACAATGATGCTGCCTTCATATAGCATTTCAAAGGCAACCCTGAATGCCTACACAAGAATCCTGGCCAAAAAGTATCCCAAAATGTGTATCAACTGTGTGCATCCTGGTTTTGTCAACACCGATATCAACTGGCATACCGGAACAATGACAGTGCAAGAGGGAGCAGCAGGTCCTCTCAAGTTGGCTCTTCTACCAGATGGAGGACCTACAGGCTGCTATTTTGATCAAACTCAAGTAGCAGATTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short

Protein Analysis

308

Amino Acids

33.74

Weight (kDa)

6.56

Isoelectric Point (pI)

32.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 12 - 180 1.6e-24 short chain dehydrogenase
KR PF08659 14 - 100 4e-06 KR domain
adh_short_C2 PF13561 17 - 116 1.2e-14 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016796)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g27110
malus_domestica MD00G1032200.v1.1 MD11G1179400.v1.1
prunus_persica Prupe.6G151900_v2.0.a1
pyrus_communis pycom03g11580 pycom11g15490
rosa_chinensis RchiOBHm_Chr5g0049671
rosa_laevigata RLG00000034632
rosa_roxburghii Rroxscaffold_1G00031560
rosa_rugosa Rorug05G0250400
rosa_samantha Rh5BG337500 Rh5CG362200 Rh5DG349700
rosa_wichuraiana Rw5G030840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 833
AccB7I CCANNNNNTGG 2 cut(s) 357, 672
AccII CGCG 1 cut(s) 38
AciI CCGC 2 cut(s) 38, 82
AclWI GGATC 2 cut(s) 212, 341
AcoI YGGCCR 1 cut(s) 738
AcsI RAATTY 1 cut(s) 384
AdeI CACNNNGTG 1 cut(s) 227
AfaI GTAC 2 cut(s) 35, 192
AfiI CCNNNNNNNGG 6 cut(s) 103, 267, 357, 531, 672, 875
AgsI TTSAA 7 cut(s) 14, 389, 433, 487, 646, 662, 705
AjnI CCWGG 2 cut(s) 735, 778
AjuI GAANNNNNNNTTGG 2 cut(s) 179, 211
AluBI AGCT 3 cut(s) 160, 205, 299
AluI AGCT 3 cut(s) 160, 205, 299
Alw26I GTCTC 1 cut(s) 526
AlwI GGATC 2 cut(s) 212, 341
AoxI GGCC 2 cut(s) 147, 738
ApeKI GCWGC 3 cut(s) 685, 839, 888
ApoI RAATTY 1 cut(s) 384
AspS9I GGNCC 2 cut(s) 845, 878
AsuHPI GGTGA 1 cut(s) 241
AvaII GGWCC 2 cut(s) 845, 878
BaeI ACNNNNGTAYC 2 cut(s) 46, 79
BalI TGGCCA 1 cut(s) 740
BbvCI CCTCAGC 1 cut(s) 420
BbvI GCAGC 3 cut(s) 672, 851, 875
BccI CCATC 4 cut(s) 180, 207, 666, 866
BceAI ACGGC 1 cut(s) 135
BciT130I CCWGG 2 cut(s) 737, 780
BciVI GTATCC 1 cut(s) 759
BclI TGATCA 1 cut(s) 898
BcoDI GTCTC 1 cut(s) 526
BfaI CTAG 1 cut(s) 300
BfmI CTRYAG 2 cut(s) 498, 882
BfuAI ACCTGC 1 cut(s) 833
BfuI GTATCC 1 cut(s) 759
BisI GCNGC 4 cut(s) 83, 686, 840, 889
BlsI GCNGC 4 cut(s) 84, 687, 841, 890
Bme1390I CCNGG 2 cut(s) 737, 780
Bme18I GGWCC 2 cut(s) 845, 878
BmgT120I GGNCC 2 cut(s) 845, 878
BmrFI CCNGG 2 cut(s) 737, 780
BmsI GCATC 3 cut(s) 604, 672, 784
BpmI CTGGAG 1 cut(s) 315
Bpu10I CCTNAGC 1 cut(s) 420
BpuEI CTTGAG 3 cut(s) 527, 836, 891
BsaJI CCNNGG 1 cut(s) 97
BsaWI WCCGGW 2 cut(s) 47, 812
BsaXI ACNNNNNCTCC 2 cut(s) 297, 327
Bsc4I CCNNNNNNNGG 6 cut(s) 103, 267, 357, 531, 672, 875
Bse1I ACTGG 2 cut(s) 93, 809
BseBI CCWGG 2 cut(s) 737, 780
BseDI CCNNGG 1 cut(s) 97
BseGI GGATG 4 cut(s) 133, 619, 677, 775
BseLI CCNNNNNNNGG 6 cut(s) 103, 267, 357, 531, 672, 875
BseMII CTCAG 4 cut(s) 238, 411, 544, 637
BseNI ACTGG 2 cut(s) 93, 809
BseRI GAGGAG 2 cut(s) 514, 617
BseXI GCAGC 3 cut(s) 672, 851, 875
Bsh1236I CGCG 1 cut(s) 38
BshFI GGCC 2 cut(s) 149, 740
BsiSI CCGG 2 cut(s) 48, 813
BslI CCNNNNNNNGG 6 cut(s) 103, 267, 357, 531, 672, 875
BsmAI GTCTC 1 cut(s) 526
BsmI GAATGC 2 cut(s) 431, 724
BsnI GGCC 2 cut(s) 149, 740
Bsp143I GATC 3 cut(s) 217, 346, 898
BspACI CCGC 2 cut(s) 38, 82
BspANI GGCC 2 cut(s) 149, 740
BspCNI CTCAG 4 cut(s) 237, 412, 543, 636
BspFNI CGCG 1 cut(s) 38
BspMAI CTGCAG 1 cut(s) 502
BspMI ACCTGC 1 cut(s) 833
BspPI GGATC 2 cut(s) 212, 341
BspQI GCTCTTC 1 cut(s) 867
BsrI ACTGG 2 cut(s) 93, 809
BssECI CCNNGG 1 cut(s) 97
BssMI GATC 3 cut(s) 217, 346, 898
Bst2UI CCWGG 2 cut(s) 737, 780
Bst4CI ACNGT 2 cut(s) 770, 826
Bst6I CTCTTC 3 cut(s) 200, 555, 867
BstC8I GCNNGC 2 cut(s) 94, 269
BstDEI CTNAG 4 cut(s) 224, 420, 530, 623
BstEII GGTNACC 1 cut(s) 43
BstENI CCTNNNNNAGG 2 cut(s) 265, 529
BstF5I GGATG 4 cut(s) 133, 619, 677, 775
BstFNI CGCG 1 cut(s) 38
BstKTI GATC 3 cut(s) 220, 349, 901
BstMAI GTCTC 1 cut(s) 526
BstMBI GATC 3 cut(s) 217, 346, 898
BstNI CCWGG 2 cut(s) 737, 780
BstPI GGTNACC 1 cut(s) 43
BstSCI CCNGG 2 cut(s) 735, 778
BstSFI CTRYAG 2 cut(s) 498, 882
BstUI CGCG 1 cut(s) 38
BstV1I GCAGC 3 cut(s) 672, 851, 875
BstX2I RGATCY 1 cut(s) 217
BstYI RGATCY 1 cut(s) 217
BsuI GTATCC 1 cut(s) 759
BsuRI GGCC 2 cut(s) 149, 740
BtsCI GGATG 4 cut(s) 133, 619, 677, 775
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 3 cut(s) 150, 232, 831
BveI ACCTGC 1 cut(s) 833
Cac8I GCNNGC 2 cut(s) 94, 269
Cfr13I GGNCC 2 cut(s) 845, 878
Csp6I GTAC 2 cut(s) 34, 191
CviAII CATG 3 cut(s) 167, 182, 638
CviQI GTAC 2 cut(s) 34, 191
DdeI CTNAG 4 cut(s) 224, 420, 530, 623
DpnI GATC 3 cut(s) 219, 348, 900
DpnII GATC 3 cut(s) 217, 346, 898
DraIII CACNNNGTG 1 cut(s) 227
EaeI YGGCCR 1 cut(s) 738
Eam1104I CTCTTC 3 cut(s) 200, 555, 867
EarI CTCTTC 3 cut(s) 200, 555, 867
Eco32I GATATC 2 cut(s) 277, 799
Eco47I GGWCC 2 cut(s) 845, 878
Eco91I GGTNACC 1 cut(s) 43
EcoNI CCTNNNNNAGG 2 cut(s) 265, 529
EcoO109I RGGNCCY 2 cut(s) 845, 878
EcoO65I GGTNACC 1 cut(s) 43
EcoRII CCWGG 2 cut(s) 735, 778
EcoRV GATATC 2 cut(s) 277, 799
FaeI CATG 3 cut(s) 170, 185, 641
FaiI YATR 9 cut(s) 168, 183, 398, 405, 447, 639, 694, 696, 810
FatI CATG 3 cut(s) 166, 181, 637
FbaI TGATCA 1 cut(s) 898
Fnu4HI GCNGC 4 cut(s) 83, 686, 840, 889
FokI GGATG 4 cut(s) 140, 626, 684, 762
Fsp4HI GCNGC 4 cut(s) 83, 686, 840, 889
FspBI CTAG 1 cut(s) 300
GluI GCNGC 4 cut(s) 83, 686, 840, 889
GsuI CTGGAG 1 cut(s) 315
HaeIII GGCC 2 cut(s) 149, 740
HapII CCGG 2 cut(s) 48, 813
Hin1II CATG 3 cut(s) 170, 185, 641
HincII GTYRAC 4 cut(s) 117, 286, 379, 790
HindII GTYRAC 4 cut(s) 117, 286, 379, 790
HinfI GANTC 2 cut(s) 550, 732
HpaI GTTAAC 1 cut(s) 286
HpaII CCGG 2 cut(s) 48, 813
HphI GGTGA 1 cut(s) 241
Hpy166II GTNNAC 5 cut(s) 117, 286, 379, 539, 790
Hpy188I TCNGA 2 cut(s) 626, 923
Hpy188III TCNNGA 3 cut(s) 484, 532, 544
Hpy8I GTNNAC 5 cut(s) 117, 286, 379, 539, 790
HpyAV CCTTC 3 cut(s) 135, 271, 699
HpyCH4III ACNGT 2 cut(s) 770, 826
HpyCH4V TGCA 6 cut(s) 232, 500, 617, 637, 775, 829
HpyF3I CTNAG 4 cut(s) 224, 420, 530, 623
Hsp92II CATG 3 cut(s) 170, 185, 641
Ksp22I TGATCA 1 cut(s) 898
KspAI GTTAAC 1 cut(s) 286
Kzo9I GATC 3 cut(s) 217, 346, 898
LguI GCTCTTC 1 cut(s) 867
LmnI GCTCC 6 cut(s) 23, 50, 165, 296, 503, 836
Lsp1109I GCAGC 3 cut(s) 672, 851, 875
LweI GCATC 3 cut(s) 604, 672, 784
MaeI CTAG 1 cut(s) 300
MaeIII GTNAC 4 cut(s) 43, 211, 254, 460
MalI GATC 3 cut(s) 219, 348, 900
MboI GATC 3 cut(s) 217, 346, 898
MboII GAAGA 6 cut(s) 170, 187, 335, 572, 639, 854
MflI RGATCY 1 cut(s) 217
MlsI TGGCCA 1 cut(s) 740
MluCI AATT 2 cut(s) 384, 439
MluNI TGGCCA 1 cut(s) 740
Mox20I TGGCCA 1 cut(s) 740
MscI TGGCCA 1 cut(s) 740
MseI TTAA 1 cut(s) 285
MslI CAYNNNNRTG 2 cut(s) 180, 186
Msp20I TGGCCA 1 cut(s) 740
MspI CCGG 2 cut(s) 48, 813
MspR9I CCNGG 2 cut(s) 737, 780
Mva1269I GAATGC 2 cut(s) 431, 724
MvaI CCWGG 2 cut(s) 737, 780
MvnI CGCG 1 cut(s) 38
NdeII GATC 3 cut(s) 217, 346, 898
NlaIII CATG 3 cut(s) 170, 185, 641
NmeAIII GCCGAG 1 cut(s) 122
NmuCI GTSAC 3 cut(s) 211, 254, 460
PciSI GCTCTTC 1 cut(s) 867
PctI GAATGC 2 cut(s) 431, 724
PfeI GAWTC 2 cut(s) 550, 732
PflMI CCANNNNNTGG 2 cut(s) 357, 672
PkrI GCNGC 4 cut(s) 84, 687, 841, 890
PpuMI RGGWCCY 2 cut(s) 845, 878
Psp5II RGGWCCY 2 cut(s) 845, 878
Psp6I CCWGG 2 cut(s) 735, 778
PspEI GGTNACC 1 cut(s) 43
PspGI CCWGG 2 cut(s) 735, 778
PspPI GGNCC 2 cut(s) 845, 878
PspPPI RGGWCCY 2 cut(s) 845, 878
PsrI GAACNNNNNNTAC 2 cut(s) 425, 457
PstI CTGCAG 1 cut(s) 502
PsuI RGATCY 1 cut(s) 217
RsaI GTAC 2 cut(s) 35, 192
RsaNI GTAC 2 cut(s) 34, 191
RseI CAYNNNNRTG 2 cut(s) 180, 186
SapI GCTCTTC 1 cut(s) 867
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 4 cut(s) 83, 686, 840, 889
Sau3AI GATC 3 cut(s) 217, 346, 898
Sau96I GGNCC 2 cut(s) 845, 878
ScrFI CCNGG 2 cut(s) 737, 780
SfaNI GCATC 3 cut(s) 604, 672, 784
SfcI CTRYAG 2 cut(s) 498, 882
SinI GGWCC 2 cut(s) 845, 878
SmiMI CAYNNNNRTG 2 cut(s) 180, 186
SmlI CTYRAG 3 cut(s) 542, 851, 906
SmoI CTYRAG 3 cut(s) 542, 851, 906
Sse9I AATT 2 cut(s) 384, 439
SsiI CCGC 2 cut(s) 38, 82
SspMI CTAG 1 cut(s) 300
StyD4I CCNGG 2 cut(s) 735, 778
TaaI ACNGT 2 cut(s) 770, 826
TaqI TCGA 1 cut(s) 315
TasI AATT 2 cut(s) 384, 439
TatI WGTACW 1 cut(s) 190
TauI GCSGC 1 cut(s) 85
TfiI GAWTC 2 cut(s) 550, 732
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TscAI CASTG 3 cut(s) 157, 232, 831
TseFI GTSAC 3 cut(s) 211, 254, 460
TseI GCWGC 3 cut(s) 685, 839, 888
Tsp45I GTSAC 3 cut(s) 211, 254, 460
TspDTI ATGAA 3 cut(s) 170, 588, 681
TspRI CASTG 3 cut(s) 157, 232, 831
Van91I CCANNNNNTGG 2 cut(s) 357, 672
VpaK11BI GGWCC 2 cut(s) 845, 878
XagI CCTNNNNNAGG 2 cut(s) 265, 529
XapI RAATTY 1 cut(s) 384
XspI CTAG 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.