Rh5CG362200

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0016796
Physical Location & Seq
Reverse (-)
43375642 .. 43378211
2570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG362200.1

Sequence Viewer

Length: 927 bp
ATGGGAAGCATTCAACGACCACAGGGAGCAGAGAGGTACGCGGTGGTTACCGGCGCGAACAAGGGTATCGGGTTTGAGGTAGTCCGGCAACTAGCATGCCGAGGCATTGTGGTGGTGTTGACGGCGAGAGATGAGAAAAGGGGAAGGGAAGCCACAGCCAAGCTCCATCATGATCATCATCTTCATGCCAATGTAGTCTTCCATCAGCTTGATGTGTTGGATCCACTTAGCGTCCAGTCTTTGGCAAATTTCATACATGACACCTTTGGCAGGCTTGATATCTTGGTTAATAACGCTGGAGCTAGTGGAGTTTTGGTTGTTGAGGAAGAACTCAAAGCCCTGAACATTGATCCCACCTCTTGGCTTTCAGGTCAAGCAGTCAACAAAGTTCAAGGTGCTATAAAATCAACTTACGAAAAGGCTGAGGAATGCTTGAACACCAATTACTATGGTGTCAAAAGAGTGACAGAGGCGCTTCTCCCACTCTTGAAACTCTCTACTGCAGGAGCAAGAATTGTCAATGTCTCATCTCTCAGGAGTGAACTAAAGAGGATTCCAAGTGAAGAGATAAGGAATGAACTTGGAAATGTAGAAGCATTGACAGAGGAGAAAGTGGATGCAGTTCTGAGAAGATTCCTGCATGATTTCAAAGAAAATTCACTTGAAGCCAATGGATGGACAATGATGCTGCCTTCATATAGCATTTCAAAGGCAACCCTGAACGCCTACACAAGAATCCTTGCCAAAAAGTATCCCAAAATGTACATCAACTGTGTGCATCCCGGTTTTGTCAACACCGATCTCAACTGGCATACTGGGACAATGACTCTGCAAGAGGGGGCTGCAGGTCCTCTCAAGTTGGCTCTTCTACCAGATGGAGGACCTACAGGCTGCTATTTAGATCAAACTGAAGTAGCAGACTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short

Protein Analysis

308

Amino Acids

33.9

Weight (kDa)

6.56

Isoelectric Point (pI)

34.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 13 - 181 3.5e-24 short chain dehydrogenase
adh_short_C2 PF13561 18 - 123 7.4e-14 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016796)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g27110
malus_domestica MD00G1032200.v1.1 MD11G1179400.v1.1
prunus_persica Prupe.6G151900_v2.0.a1
pyrus_communis pycom03g11580 pycom11g15490
rosa_chinensis RchiOBHm_Chr5g0049671
rosa_laevigata RLG00000034632
rosa_roxburghii Rroxscaffold_1G00031560
rosa_rugosa Rorug05G0250400
rosa_samantha Rh5BG337500 Rh5CG362200 Rh5DG349700
rosa_wichuraiana Rw5G030840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 836
AccB7I CCANNNNNTGG 3 cut(s) 241, 360, 675
AccII CGCG 2 cut(s) 41, 56
AciI CCGC 1 cut(s) 41
AclWI GGATC 3 cut(s) 215, 228, 344
AcsI RAATTY 2 cut(s) 247, 655
AfaI GTAC 2 cut(s) 38, 764
AfiI CCNNNNNNNGG 5 cut(s) 241, 270, 360, 675, 878
AgsI TTSAA 7 cut(s) 14, 392, 436, 490, 649, 665, 708
AjuI GAANNNNNNNTTGG 2 cut(s) 182, 214
AluBI AGCT 3 cut(s) 163, 208, 302
AluI AGCT 3 cut(s) 163, 208, 302
Alw26I GTCTC 1 cut(s) 529
AlwI GGATC 3 cut(s) 215, 228, 344
ApeKI GCWGC 3 cut(s) 688, 842, 891
ApoI RAATTY 2 cut(s) 247, 655
AspLEI GCGC 2 cut(s) 56, 475
AspS9I GGNCC 2 cut(s) 848, 881
AsuC2I CCSGG 1 cut(s) 783
AvaII GGWCC 2 cut(s) 848, 881
BaeI ACNNNNGTAYC 2 cut(s) 49, 82
BamHI GGATCC 1 cut(s) 220
BbsI GAAGAC 1 cut(s) 190
BbvCI CCTCAGC 1 cut(s) 423
BbvI GCAGC 3 cut(s) 675, 829, 878
BccI CCATC 4 cut(s) 174, 210, 669, 869
BceAI ACGGC 1 cut(s) 138
BciVI GTATCC 1 cut(s) 762
BclI TGATCA 1 cut(s) 172
BcnI CCSGG 1 cut(s) 783
BcoDI GTCTC 1 cut(s) 529
BfaI CTAG 2 cut(s) 92, 303
BfmI CTRYAG 3 cut(s) 501, 843, 885
BfoI RGCGCY 1 cut(s) 476
BfuAI ACCTGC 1 cut(s) 836
BfuI GTATCC 1 cut(s) 762
BisI GCNGC 3 cut(s) 689, 843, 892
BlsI GCNGC 3 cut(s) 690, 844, 893
Bme1390I CCNGG 1 cut(s) 783
Bme18I GGWCC 2 cut(s) 848, 881
BmgT120I GGNCC 2 cut(s) 848, 881
BmiI GGNNCC 1 cut(s) 222
BmrFI CCNGG 1 cut(s) 783
BmrI ACTGGG 1 cut(s) 825
BmsI GCATC 3 cut(s) 607, 675, 787
BmuI ACTGGG 1 cut(s) 825
BpiI GAAGAC 1 cut(s) 190
BpmI CTGGAG 1 cut(s) 318
Bpu10I CCTNAGC 1 cut(s) 423
BpuEI CTTGAG 1 cut(s) 839
BpuMI CCSGG 1 cut(s) 783
BsaBI GATNNNNATC 1 cut(s) 177
BsaJI CCNNGG 1 cut(s) 100
BsaXI ACNNNNNCTCC 2 cut(s) 300, 330
Bsc4I CCNNNNNNNGG 5 cut(s) 241, 270, 360, 675, 878
Bse118I RCCGGY 1 cut(s) 50
Bse1I ACTGG 3 cut(s) 235, 812, 820
Bse8I GATNNNNATC 1 cut(s) 177
BseDI CCNNGG 1 cut(s) 100
BseGI GGATG 3 cut(s) 622, 680, 778
BseJI GATNNNNATC 1 cut(s) 177
BseLI CCNNNNNNNGG 5 cut(s) 241, 270, 360, 675, 878
BseMII CTCAG 3 cut(s) 414, 547, 617
BseNI ACTGG 3 cut(s) 235, 812, 820
BseRI GAGGAG 1 cut(s) 620
BseXI GCAGC 3 cut(s) 675, 829, 878
Bsh1236I CGCG 2 cut(s) 41, 56
BsiSI CCGG 3 cut(s) 51, 85, 783
BslFI GGGAC 1 cut(s) 832
BslI CCNNNNNNNGG 5 cut(s) 241, 270, 360, 675, 878
BsmAI GTCTC 1 cut(s) 529
BsmFI GGGAC 1 cut(s) 832
BsmI GAATGC 2 cut(s) 9, 434
Bsp1407I TGTACA 1 cut(s) 762
Bsp143I GATC 5 cut(s) 172, 220, 349, 799, 901
BspACI CCGC 1 cut(s) 41
BspCNI CTCAG 3 cut(s) 415, 546, 618
BspFNI CGCG 2 cut(s) 41, 56
BspHI TCATGA 1 cut(s) 169
BspLI GGNNCC 1 cut(s) 222
BspMAI CTGCAG 2 cut(s) 505, 847
BspMI ACCTGC 1 cut(s) 836
BspPI GGATC 3 cut(s) 215, 228, 344
BspQI GCTCTTC 1 cut(s) 870
BsrFI RCCGGY 1 cut(s) 50
BsrGI TGTACA 1 cut(s) 762
BsrI ACTGG 3 cut(s) 235, 812, 820
BssAI RCCGGY 1 cut(s) 50
BssECI CCNNGG 1 cut(s) 100
BssMI GATC 5 cut(s) 172, 220, 349, 799, 901
Bst4CI ACNGT 1 cut(s) 773
Bst6I CTCTTC 2 cut(s) 558, 870
BstAUI TGTACA 1 cut(s) 762
BstC8I GCNNGC 2 cut(s) 97, 272
BstDEI CTNAG 4 cut(s) 227, 423, 533, 626
BstEII GGTNACC 1 cut(s) 46
BstENI CCTNNNNNAGG 1 cut(s) 268
BstF5I GGATG 3 cut(s) 622, 680, 778
BstFNI CGCG 2 cut(s) 41, 56
BstH2I RGCGCY 1 cut(s) 476
BstHHI GCGC 2 cut(s) 56, 475
BstKTI GATC 5 cut(s) 175, 223, 352, 802, 904
BstMAI GTCTC 1 cut(s) 529
BstMBI GATC 5 cut(s) 172, 220, 349, 799, 901
BstNSI RCATGY 1 cut(s) 99
BstPI GGTNACC 1 cut(s) 46
BstSCI CCNGG 1 cut(s) 781
BstSFI CTRYAG 3 cut(s) 501, 843, 885
BstUI CGCG 2 cut(s) 41, 56
BstV1I GCAGC 3 cut(s) 675, 829, 878
BstV2I GAAGAC 1 cut(s) 190
BstX2I RGATCY 1 cut(s) 220
BstYI RGATCY 1 cut(s) 220
BsuI GTATCC 1 cut(s) 762
BtsCI GGATG 3 cut(s) 622, 680, 778
BveI ACCTGC 1 cut(s) 836
Cac8I GCNNGC 2 cut(s) 97, 272
CciI TCATGA 1 cut(s) 169
CfoI GCGC 2 cut(s) 56, 475
Cfr10I RCCGGY 1 cut(s) 50
Cfr13I GGNCC 2 cut(s) 848, 881
CseI GACGC 1 cut(s) 220
Csp6I GTAC 2 cut(s) 37, 763
CviAII CATG 5 cut(s) 96, 170, 185, 257, 641
CviQI GTAC 2 cut(s) 37, 763
DdeI CTNAG 4 cut(s) 227, 423, 533, 626
DpnI GATC 5 cut(s) 174, 222, 351, 801, 903
DpnII GATC 5 cut(s) 172, 220, 349, 799, 901
Eam1104I CTCTTC 2 cut(s) 558, 870
EarI CTCTTC 2 cut(s) 558, 870
Eco32I GATATC 1 cut(s) 280
Eco47I GGWCC 2 cut(s) 848, 881
Eco91I GGTNACC 1 cut(s) 46
EcoNI CCTNNNNNAGG 1 cut(s) 268
EcoO109I RGGNCCY 2 cut(s) 848, 881
EcoO65I GGTNACC 1 cut(s) 46
EcoRV GATATC 1 cut(s) 280
FaeI CATG 5 cut(s) 99, 173, 188, 260, 644
FaqI GGGAC 1 cut(s) 832
FatI CATG 5 cut(s) 95, 169, 184, 256, 640
FbaI TGATCA 1 cut(s) 172
Fnu4HI GCNGC 3 cut(s) 689, 843, 892
FokI GGATG 3 cut(s) 629, 687, 765
Fsp4HI GCNGC 3 cut(s) 689, 843, 892
FspBI CTAG 2 cut(s) 92, 303
GlaI GCGC 2 cut(s) 55, 474
GluI GCNGC 3 cut(s) 689, 843, 892
GsuI CTGGAG 1 cut(s) 318
HaeII RGCGCY 1 cut(s) 476
HapII CCGG 3 cut(s) 51, 85, 783
HgaI GACGC 1 cut(s) 220
HhaI GCGC 2 cut(s) 56, 475
Hin1II CATG 5 cut(s) 99, 173, 188, 260, 644
Hin6I GCGC 2 cut(s) 54, 473
HinP1I GCGC 2 cut(s) 54, 473
HincII GTYRAC 3 cut(s) 120, 382, 793
HindII GTYRAC 3 cut(s) 120, 382, 793
HinfI GANTC 4 cut(s) 553, 633, 735, 826
HpaII CCGG 3 cut(s) 51, 85, 783
Hpy166II GTNNAC 4 cut(s) 120, 382, 542, 793
Hpy188I TCNGA 2 cut(s) 627, 926
Hpy188III TCNNGA 3 cut(s) 170, 487, 535
Hpy8I GTNNAC 4 cut(s) 120, 382, 542, 793
HpyAV CCTTC 2 cut(s) 138, 702
HpyCH4III ACNGT 1 cut(s) 773
HpyCH4V TGCA 6 cut(s) 503, 620, 640, 778, 832, 845
HpyF3I CTNAG 4 cut(s) 227, 423, 533, 626
Hsp92II CATG 5 cut(s) 99, 173, 188, 260, 644
HspAI GCGC 2 cut(s) 54, 473
Ksp22I TGATCA 1 cut(s) 172
Kzo9I GATC 5 cut(s) 172, 220, 349, 799, 901
LguI GCTCTTC 1 cut(s) 870
LmnI GCTCC 4 cut(s) 26, 168, 299, 506
Lsp1109I GCAGC 3 cut(s) 675, 829, 878
LweI GCATC 3 cut(s) 607, 675, 787
MaeI CTAG 2 cut(s) 92, 303
MaeIII GTNAC 2 cut(s) 46, 463
MalI GATC 5 cut(s) 174, 222, 351, 801, 903
MboI GATC 5 cut(s) 172, 220, 349, 799, 901
MboII GAAGA 6 cut(s) 173, 190, 338, 575, 642, 857
MflI RGATCY 1 cut(s) 220
MluCI AATT 4 cut(s) 247, 442, 513, 655
MlyI GAGTC 1 cut(s) 820
MmeI TCCRAC 1 cut(s) 198
MseI TTAA 1 cut(s) 288
MslI CAYNNNNRTG 3 cut(s) 110, 183, 189
MspI CCGG 3 cut(s) 51, 85, 783
MspR9I CCNGG 1 cut(s) 783
Mva1269I GAATGC 2 cut(s) 9, 434
MvnI CGCG 2 cut(s) 41, 56
NciI CCSGG 1 cut(s) 783
NdeII GATC 5 cut(s) 172, 220, 349, 799, 901
NlaIII CATG 5 cut(s) 99, 173, 188, 260, 644
NlaIV GGNNCC 1 cut(s) 222
NmeAIII GCCGAG 1 cut(s) 125
NmuCI GTSAC 1 cut(s) 463
NspI RCATGY 1 cut(s) 99
PaeI GCATGC 1 cut(s) 99
PagI TCATGA 1 cut(s) 169
PciSI GCTCTTC 1 cut(s) 870
PctI GAATGC 2 cut(s) 9, 434
PfeI GAWTC 3 cut(s) 553, 633, 735
PflMI CCANNNNNTGG 3 cut(s) 241, 360, 675
PkrI GCNGC 3 cut(s) 690, 844, 893
PleI GAGTC 1 cut(s) 820
PpsI GAGTC 1 cut(s) 820
PpuMI RGGWCCY 2 cut(s) 848, 881
Psp5II RGGWCCY 2 cut(s) 848, 881
PspEI GGTNACC 1 cut(s) 46
PspN4I GGNNCC 1 cut(s) 222
PspPI GGNCC 2 cut(s) 848, 881
PspPPI RGGWCCY 2 cut(s) 848, 881
PsrI GAACNNNNNNTAC 2 cut(s) 428, 460
PstI CTGCAG 2 cut(s) 505, 847
PsuI RGATCY 1 cut(s) 220
RsaI GTAC 2 cut(s) 38, 764
RsaNI GTAC 2 cut(s) 37, 763
RseI CAYNNNNRTG 3 cut(s) 110, 183, 189
SapI GCTCTTC 1 cut(s) 870
SaqAI TTAA 1 cut(s) 288
SatI GCNGC 3 cut(s) 689, 843, 892
Sau3AI GATC 5 cut(s) 172, 220, 349, 799, 901
Sau96I GGNCC 2 cut(s) 848, 881
SchI GAGTC 1 cut(s) 820
ScrFI CCNGG 1 cut(s) 783
SfaNI GCATC 3 cut(s) 607, 675, 787
SfcI CTRYAG 3 cut(s) 501, 843, 885
SinI GGWCC 2 cut(s) 848, 881
SmiMI CAYNNNNRTG 3 cut(s) 110, 183, 189
SmlI CTYRAG 1 cut(s) 854
SmoI CTYRAG 1 cut(s) 854
SphI GCATGC 1 cut(s) 99
Sse9I AATT 4 cut(s) 247, 442, 513, 655
SsiI CCGC 1 cut(s) 41
SspMI CTAG 2 cut(s) 92, 303
StyD4I CCNGG 1 cut(s) 781
TaaI ACNGT 1 cut(s) 773
TasI AATT 4 cut(s) 247, 442, 513, 655
TatI WGTACW 1 cut(s) 762
TfiI GAWTC 3 cut(s) 553, 633, 735
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TseFI GTSAC 1 cut(s) 463
TseI GCWGC 3 cut(s) 688, 842, 891
Tsp45I GTSAC 1 cut(s) 463
TspDTI ATGAA 4 cut(s) 173, 241, 591, 684
Van91I CCANNNNNTGG 3 cut(s) 241, 360, 675
VpaK11BI GGWCC 2 cut(s) 848, 881
XagI CCTNNNNNAGG 1 cut(s) 268
XapI RAATTY 2 cut(s) 247, 655
XceI RCATGY 1 cut(s) 99
XspI CTAG 2 cut(s) 92, 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.