Rroxscaffold_1G00031560

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0016796
Physical Location & Seq
Reverse (-)
44634540 .. 44636216
1677 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00031560.1

Sequence Viewer

Length: 924 bp
ATGACTTGGATCCACCAATCATTGCATACACGGATACCCGTAACACCTTTGGAGCTCCTCAGACTTGAAGACCATAATCCAAGCTTTACTGCAACAATGGGAAGCATTCAACGACCACAGGGAGCAGAGAGGTACGCAGTGGTTACCGGCGCGAACAAGGGTATCGGGTTTGAGGTAGTCCGGCAACTAGCGTGCCGAGGCATTGTGGTGGTGTTGACGGCGAGAGATGAGAAAAGGGGAAGGGAAGCCACAGCCAAGCTCCATCATGATCATCATCTTCATGCCAATGTAGTCTTCCATCAGCTTGATGTGTTGGATCCACTTAGCGTCCAATCTTTGGCAAATTTCATACAGGACACCTTTGGCAGGCTTGATATCTTGGTTAATAACGCTGGAGTTAGTGGAGTTTTGGTTGTTGAGGAAGAACTCAAGGCCCTGAACGTTGATCCCACCTCTTGGCTTTCAGGTCAAGCAGTCAACAAAGTTCAAGGTGCTATAAAATCAACTTACGAAAAGGCTGAGGAATGCTTGAACACCAATTACTATGGTGTCAAAAGAGTGACAGAGGCTCTTCTACCACTCTTGAAACTCTCTGCTGCAGGAGCAAGAATTGTCAATGTCTCATCTCTCAGGAGTGAACTAAAGAGGATTCCAAGTGAAGAGATGAGAAATGAACTTGGAAATGTAGAAGCATTGACAGAGGAGAAAGTGGATGCAGTTCTGAGAAGATTCCTGCATGATTTCAAAGAAAATTCACTTGAAGCCAATGGATGGACAATGATGCTGCCTTCATATAGCATTTCAAAGGCAACCCTGAATGCCTACACAAGAATCCTTGCCAAAAGTCCTCTCAAGTTGGCTCTTTTACCAGATGGAGGACCTACAGGCTGCTATTTCAATCAAACTGAAGTAGCAGACTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short

Protein Analysis

307

Amino Acids

33.98

Weight (kDa)

6.56

Isoelectric Point (pI)

34.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 45 - 213 4.8e-25 short chain dehydrogenase
KR PF08659 47 - 135 3.3e-06 KR domain
adh_short_C2 PF13561 50 - 155 1.7e-14 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016796)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g27110
malus_domestica MD00G1032200.v1.1 MD11G1179400.v1.1
prunus_persica Prupe.6G151900_v2.0.a1
pyrus_communis pycom03g11580 pycom11g15490
rosa_chinensis RchiOBHm_Chr5g0049671
rosa_laevigata RLG00000034632
rosa_roxburghii Rroxscaffold_1G00031560
rosa_rugosa Rorug05G0250400
rosa_samantha Rh5BG337500 Rh5CG362200 Rh5DG349700
rosa_wichuraiana Rw5G030840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 337, 456, 771
AccII CGCG 1 cut(s) 152
AclI AACGTT 1 cut(s) 441
AclWI GGATC 5 cut(s) 4, 17, 311, 324, 440
AcsI RAATTY 2 cut(s) 343, 751
AfaI GTAC 1 cut(s) 134
AfiI CCNNNNNNNGG 5 cut(s) 337, 366, 456, 771, 875
AgsI TTSAA 9 cut(s) 68, 110, 488, 532, 586, 745, 761, 804, 898
AjuI GAANNNNNNNTTGG 2 cut(s) 278, 310
AluBI AGCT 4 cut(s) 55, 84, 259, 304
AluI AGCT 4 cut(s) 55, 84, 259, 304
Alw21I GWGCWC 1 cut(s) 57
Alw26I GTCTC 1 cut(s) 625
AlwI GGATC 5 cut(s) 4, 17, 311, 324, 440
AoxI GGCC 1 cut(s) 432
ApeKI GCWGC 3 cut(s) 596, 784, 888
ApoI RAATTY 2 cut(s) 343, 751
AspLEI GCGC 1 cut(s) 152
AspS9I GGNCC 2 cut(s) 433, 878
AvaII GGWCC 1 cut(s) 878
BaeI ACNNNNGTAYC 2 cut(s) 145, 178
BamHI GGATCC 2 cut(s) 9, 316
BanII GRGCYC 1 cut(s) 57
BbsI GAAGAC 2 cut(s) 75, 286
Bbv12I GWGCWC 1 cut(s) 57
BbvCI CCTCAGC 1 cut(s) 519
BbvI GCAGC 3 cut(s) 583, 771, 875
BccI CCATC 4 cut(s) 270, 306, 765, 866
BceAI ACGGC 1 cut(s) 234
BciVI GTATCC 1 cut(s) 27
BclI TGATCA 1 cut(s) 268
BcoDI GTCTC 1 cut(s) 625
BfaI CTAG 1 cut(s) 188
BfmI CTRYAG 2 cut(s) 597, 882
BfuI GTATCC 1 cut(s) 27
BisI GCNGC 3 cut(s) 597, 785, 889
BlsI GCNGC 3 cut(s) 598, 786, 890
Bme18I GGWCC 1 cut(s) 878
BmgT120I GGNCC 2 cut(s) 433, 878
BmiI GGNNCC 2 cut(s) 11, 318
BmsI GCATC 2 cut(s) 703, 771
BpiI GAAGAC 2 cut(s) 75, 286
BpmI CTGGAG 1 cut(s) 414
Bpu10I CCTNAGC 1 cut(s) 519
BpuEI CTTGAG 2 cut(s) 413, 836
BsaBI GATNNNNATC 1 cut(s) 273
BsaJI CCNNGG 1 cut(s) 196
BsaXI ACNNNNNCTCC 2 cut(s) 396, 426
Bsc4I CCNNNNNNNGG 5 cut(s) 337, 366, 456, 771, 875
Bse118I RCCGGY 1 cut(s) 146
Bse3DI GCAATG 1 cut(s) 20
Bse8I GATNNNNATC 1 cut(s) 273
BseDI CCNNGG 1 cut(s) 196
BseGI GGATG 2 cut(s) 718, 776
BseJI GATNNNNATC 1 cut(s) 273
BseLI CCNNNNNNNGG 5 cut(s) 337, 366, 456, 771, 875
BseMI GCAATG 1 cut(s) 20
BseMII CTCAG 4 cut(s) 73, 510, 643, 713
BseRI GAGGAG 2 cut(s) 47, 716
BseXI GCAGC 3 cut(s) 583, 771, 875
Bsh1236I CGCG 1 cut(s) 152
BshFI GGCC 1 cut(s) 434
BsiHKAI GWGCWC 1 cut(s) 57
BsiSI CCGG 2 cut(s) 147, 181
BslI CCNNNNNNNGG 5 cut(s) 337, 366, 456, 771, 875
BsmAI GTCTC 1 cut(s) 625
BsmI GAATGC 3 cut(s) 105, 530, 823
BsnI GGCC 1 cut(s) 434
Bsp1286I GDGCHC 1 cut(s) 57
Bsp143I GATC 4 cut(s) 9, 268, 316, 445
BspANI GGCC 1 cut(s) 434
BspCNI CTCAG 4 cut(s) 72, 511, 642, 714
BspFNI CGCG 1 cut(s) 152
BspHI TCATGA 1 cut(s) 265
BspLI GGNNCC 2 cut(s) 11, 318
BspMAI CTGCAG 1 cut(s) 601
BspPI GGATC 5 cut(s) 4, 17, 311, 324, 440
BspQI GCTCTTC 1 cut(s) 576
BsrDI GCAATG 1 cut(s) 20
BsrFI RCCGGY 1 cut(s) 146
BssAI RCCGGY 1 cut(s) 146
BssECI CCNNGG 1 cut(s) 196
BssMI GATC 4 cut(s) 9, 268, 316, 445
Bst6I CTCTTC 2 cut(s) 576, 654
BstC8I GCNNGC 2 cut(s) 193, 368
BstDEI CTNAG 5 cut(s) 59, 323, 519, 629, 722
BstEII GGTNACC 1 cut(s) 142
BstENI CCTNNNNNAGG 1 cut(s) 364
BstF5I GGATG 2 cut(s) 718, 776
BstFNI CGCG 1 cut(s) 152
BstHHI GCGC 1 cut(s) 152
BstKTI GATC 4 cut(s) 12, 271, 319, 448
BstMAI GTCTC 1 cut(s) 625
BstMBI GATC 4 cut(s) 9, 268, 316, 445
BstMWI GCNNNNNNNGC 1 cut(s) 602
BstPI GGTNACC 1 cut(s) 142
BstSFI CTRYAG 2 cut(s) 597, 882
BstUI CGCG 1 cut(s) 152
BstV1I GCAGC 3 cut(s) 583, 771, 875
BstV2I GAAGAC 2 cut(s) 75, 286
BstX2I RGATCY 2 cut(s) 9, 316
BstYI RGATCY 2 cut(s) 9, 316
BsuI GTATCC 1 cut(s) 27
BsuRI GGCC 1 cut(s) 434
BtsCI GGATG 2 cut(s) 718, 776
BtsI GCAGTG 1 cut(s) 144
BtsIMutI CAGTG 1 cut(s) 144
Cac8I GCNNGC 2 cut(s) 193, 368
CciI TCATGA 1 cut(s) 265
CfoI GCGC 1 cut(s) 152
Cfr10I RCCGGY 1 cut(s) 146
Cfr13I GGNCC 2 cut(s) 433, 878
CseI GACGC 1 cut(s) 316
Csp6I GTAC 1 cut(s) 133
CviAII CATG 3 cut(s) 266, 281, 737
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 5 cut(s) 59, 323, 519, 629, 722
DpnI GATC 4 cut(s) 11, 270, 318, 447
DpnII GATC 4 cut(s) 9, 268, 316, 445
Eam1104I CTCTTC 2 cut(s) 576, 654
EarI CTCTTC 2 cut(s) 576, 654
Ecl136II GAGCTC 1 cut(s) 55
Eco24I GRGCYC 1 cut(s) 57
Eco32I GATATC 1 cut(s) 376
Eco47I GGWCC 1 cut(s) 878
Eco53kI GAGCTC 1 cut(s) 55
Eco91I GGTNACC 1 cut(s) 142
EcoICRI GAGCTC 1 cut(s) 55
EcoNI CCTNNNNNAGG 1 cut(s) 364
EcoO109I RGGNCCY 2 cut(s) 433, 878
EcoO65I GGTNACC 1 cut(s) 142
EcoRV GATATC 1 cut(s) 376
EcoT38I GRGCYC 1 cut(s) 57
FaeI CATG 3 cut(s) 269, 284, 740
FatI CATG 3 cut(s) 265, 280, 736
FbaI TGATCA 1 cut(s) 268
Fnu4HI GCNGC 3 cut(s) 597, 785, 889
FokI GGATG 2 cut(s) 725, 783
FriOI GRGCYC 1 cut(s) 57
Fsp4HI GCNGC 3 cut(s) 597, 785, 889
FspBI CTAG 1 cut(s) 188
GlaI GCGC 1 cut(s) 151
GluI GCNGC 3 cut(s) 597, 785, 889
GsuI CTGGAG 1 cut(s) 414
HaeIII GGCC 1 cut(s) 434
HapII CCGG 2 cut(s) 147, 181
HgaI GACGC 1 cut(s) 316
HhaI GCGC 1 cut(s) 152
Hin1II CATG 3 cut(s) 269, 284, 740
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
HincII GTYRAC 2 cut(s) 216, 478
HindII GTYRAC 2 cut(s) 216, 478
HindIII AAGCTT 1 cut(s) 82
HinfI GANTC 3 cut(s) 649, 729, 831
HpaII CCGG 2 cut(s) 147, 181
Hpy166II GTNNAC 3 cut(s) 216, 478, 638
Hpy188I TCNGA 3 cut(s) 62, 723, 923
Hpy188III TCNNGA 3 cut(s) 266, 583, 631
Hpy8I GTNNAC 3 cut(s) 216, 478, 638
HpyAV CCTTC 2 cut(s) 234, 798
HpyCH4IV ACGT 1 cut(s) 441
HpyCH4V TGCA 5 cut(s) 25, 92, 599, 716, 736
HpyF10VI GCNNNNNNNGC 1 cut(s) 602
HpyF3I CTNAG 5 cut(s) 59, 323, 519, 629, 722
HpySE526I ACGT 1 cut(s) 441
Hsp92II CATG 3 cut(s) 269, 284, 740
HspAI GCGC 1 cut(s) 150
Ksp22I TGATCA 1 cut(s) 268
Kzo9I GATC 4 cut(s) 9, 268, 316, 445
LguI GCTCTTC 1 cut(s) 576
LmnI GCTCC 5 cut(s) 52, 60, 122, 264, 602
Lsp1109I GCAGC 3 cut(s) 583, 771, 875
LweI GCATC 2 cut(s) 703, 771
MaeI CTAG 1 cut(s) 188
MaeII ACGT 1 cut(s) 441
MaeIII GTNAC 3 cut(s) 40, 142, 559
MalI GATC 4 cut(s) 11, 270, 318, 447
MboI GATC 4 cut(s) 9, 268, 316, 445
MboII GAAGA 7 cut(s) 80, 269, 286, 434, 563, 671, 738
MflI RGATCY 2 cut(s) 9, 316
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 4 cut(s) 343, 538, 609, 751
MmeI TCCRAC 1 cut(s) 294
MseI TTAA 1 cut(s) 384
MslI CAYNNNNRTG 3 cut(s) 206, 279, 285
MspI CCGG 2 cut(s) 147, 181
Mva1269I GAATGC 3 cut(s) 105, 530, 823
MvnI CGCG 1 cut(s) 152
MwoI GCNNNNNNNGC 1 cut(s) 602
NdeII GATC 4 cut(s) 9, 268, 316, 445
NlaIII CATG 3 cut(s) 269, 284, 740
NlaIV GGNNCC 2 cut(s) 11, 318
NmeAIII GCCGAG 1 cut(s) 221
NmuCI GTSAC 1 cut(s) 559
PagI TCATGA 1 cut(s) 265
PciSI GCTCTTC 1 cut(s) 576
PctI GAATGC 3 cut(s) 105, 530, 823
PfeI GAWTC 3 cut(s) 649, 729, 831
PflMI CCANNNNNTGG 3 cut(s) 337, 456, 771
PkrI GCNGC 3 cut(s) 598, 786, 890
PpuMI RGGWCCY 1 cut(s) 878
Psp124BI GAGCTC 1 cut(s) 57
Psp1406I AACGTT 1 cut(s) 441
Psp5II RGGWCCY 1 cut(s) 878
PspEI GGTNACC 1 cut(s) 142
PspN4I GGNNCC 2 cut(s) 11, 318
PspPI GGNCC 2 cut(s) 433, 878
PspPPI RGGWCCY 1 cut(s) 878
PsrI GAACNNNNNNTAC 2 cut(s) 524, 556
PstI CTGCAG 1 cut(s) 601
PsuI RGATCY 2 cut(s) 9, 316
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
RseI CAYNNNNRTG 3 cut(s) 206, 279, 285
SacI GAGCTC 1 cut(s) 57
SapI GCTCTTC 1 cut(s) 576
SaqAI TTAA 1 cut(s) 384
SatI GCNGC 3 cut(s) 597, 785, 889
Sau3AI GATC 4 cut(s) 9, 268, 316, 445
Sau96I GGNCC 2 cut(s) 433, 878
SduI GDGCHC 1 cut(s) 57
SfaNI GCATC 2 cut(s) 703, 771
SfcI CTRYAG 2 cut(s) 597, 882
SinI GGWCC 1 cut(s) 878
SmiMI CAYNNNNRTG 3 cut(s) 206, 279, 285
SmlI CTYRAG 2 cut(s) 428, 851
SmoI CTYRAG 2 cut(s) 428, 851
Sse9I AATT 4 cut(s) 343, 538, 609, 751
SspMI CTAG 1 cut(s) 188
SstI GAGCTC 1 cut(s) 57
TaiI ACGT 1 cut(s) 444
TasI AATT 4 cut(s) 343, 538, 609, 751
TfiI GAWTC 3 cut(s) 649, 729, 831
Tru1I TTAA 1 cut(s) 384
Tru9I TTAA 1 cut(s) 384
TscAI CASTG 1 cut(s) 144
TseFI GTSAC 1 cut(s) 559
TseI GCWGC 3 cut(s) 596, 784, 888
Tsp45I GTSAC 1 cut(s) 559
TspDTI ATGAA 4 cut(s) 269, 337, 687, 780
TspGWI ACGGA 1 cut(s) 46
TspRI CASTG 1 cut(s) 144
Van91I CCANNNNNTGG 3 cut(s) 337, 456, 771
VpaK11BI GGWCC 1 cut(s) 878
XagI CCTNNNNNAGG 1 cut(s) 364
XapI RAATTY 2 cut(s) 343, 751
XspI CTAG 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.