Rh5BG337500

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0016796
Physical Location & Seq
Reverse (-)
47350122 .. 47351770
1649 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG337500.1

Sequence Viewer

Length: 1023 bp
ATGACTTGGATCCACTTATCAGTTCATAGTTCATACACGGATACACCCGTAACACCTTTTGAGGTCCACAGACTTGAAGACCATAATCCAAGCTTTACTGCAACAATGGGAAGCATTCAGGGAGCAGAGAGGTACGCGGTGGTTACCGGTGCGAACAAGGGTATCGGGTTTGAGGTAGTCCGGCAACTAGCGTGCCGAGGCATTGTGGTGGTGTTGACGGCGAGAGATGAGAAAAGGGGAAGGGAAGCCACAGCCAAGCTCCATCATGATCATCATCTTCATGCCAATGTAGTCTTCCATCAGCTTGATGTGTTGGATCCACTTAGCGTCCAGTCTTTGGCAAATTTCATACATGACACCTTTGGCAGGCTTGATATCTTGGTTAATAACGCTGGAGCTAGTGGAGTTTTGGTTGTTGAGGAAGAACTCAAAGCCCTGAACATTGATCCCACCTCTTGGCTTTCAGGTCAAGCAGTCAACACAGTTCAAGGTGCTATAAAATCAACTTACGAAAAGGCTGAGGAATGCTTGAACACCAATTACTATGGTGTCAAAAGAGTGACGGAGGCTCTTCTCCCACTCTTGAAACTCTCTACTGCAGGAGCAAGAATTGTCAATGTCTCATCTCTCAGGAGTGAACTAAAGAGGATTCCAAGTGAAGCGATAAGGAATGAACTTGGAAATGTAGAAGCATTGACAGAGGAGAAAGTGGATGCAGTTCTGAGAAGATTCCTGCATGATTTCAAAGAAAATTCACTTGAAGCCAATGGATGGACAATGATGCTGCCTTCATATAGCATTTCAAAGGCAACCCTGAACGCCTACACAAGAATCCTTGCCAAGAAGTATCCCAAAATGTACGTCAACTGTGTGCATCCCGGTTTTGTCAACACCGATCTCAACTGGCATACTGGGACAATGACTCTGCAAGAGGGGGCGGCAGGTCCTCTCAAGTTGGCTCTTCTACCAGATGGAGGACCTACAGGCTGCTATTTCTATCAAACTGAAGTAGCAGACTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short

Protein Analysis

340

Amino Acids

37.54

Weight (kDa)

6.27

Isoelectric Point (pI)

31.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 45 - 213 6.2e-24 short chain dehydrogenase
adh_short_C2 PF13561 50 - 160 6.2e-14 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016796)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g27110
malus_domestica MD00G1032200.v1.1 MD11G1179400.v1.1
prunus_persica Prupe.6G151900_v2.0.a1
pyrus_communis pycom03g11580 pycom11g15490
rosa_chinensis RchiOBHm_Chr5g0049671
rosa_laevigata RLG00000034632
rosa_roxburghii Rroxscaffold_1G00031560
rosa_rugosa Rorug05G0250400
rosa_samantha Rh5BG337500 Rh5CG362200 Rh5DG349700
rosa_wichuraiana Rw5G030840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 932
AccB7I CCANNNNNTGG 3 cut(s) 337, 456, 771
AccII CGCG 1 cut(s) 137
AciI CCGC 2 cut(s) 137, 938
AclWI GGATC 5 cut(s) 4, 17, 311, 324, 440
AcsI RAATTY 2 cut(s) 343, 751
AfaI GTAC 2 cut(s) 134, 860
AfiI CCNNNNNNNGG 5 cut(s) 337, 366, 456, 771, 974
AgeI ACCGGT 1 cut(s) 146
AgsI TTSAA 7 cut(s) 77, 488, 532, 586, 745, 761, 804
AjuI GAANNNNNNNTTGG 2 cut(s) 278, 310
AluBI AGCT 4 cut(s) 93, 259, 304, 398
AluI AGCT 4 cut(s) 93, 259, 304, 398
Alw26I GTCTC 1 cut(s) 625
AlwI GGATC 5 cut(s) 4, 17, 311, 324, 440
ApeKI GCWGC 2 cut(s) 784, 987
ApoI RAATTY 2 cut(s) 343, 751
ArsI GACNNNNNNTTYG 2 cut(s) 846, 878
AsiGI ACCGGT 1 cut(s) 146
AspS9I GGNCC 3 cut(s) 64, 944, 977
AsuC2I CCSGG 1 cut(s) 879
AvaII GGWCC 3 cut(s) 64, 944, 977
BaeI ACNNNNGTAYC 4 cut(s) 33, 66, 145, 178
BamHI GGATCC 2 cut(s) 9, 316
BbsI GAAGAC 2 cut(s) 84, 286
BbvCI CCTCAGC 1 cut(s) 519
BbvI GCAGC 2 cut(s) 771, 974
BccI CCATC 4 cut(s) 270, 306, 765, 965
BceAI ACGGC 1 cut(s) 234
BciVI GTATCC 2 cut(s) 34, 858
BclI TGATCA 1 cut(s) 268
BcnI CCSGG 1 cut(s) 879
BcoDI GTCTC 1 cut(s) 625
BfaI CTAG 2 cut(s) 188, 399
BfmI CTRYAG 2 cut(s) 597, 981
BfuAI ACCTGC 1 cut(s) 932
BfuI GTATCC 2 cut(s) 34, 858
BisI GCNGC 3 cut(s) 785, 939, 988
BlsI GCNGC 3 cut(s) 786, 940, 989
Bme1390I CCNGG 1 cut(s) 879
Bme18I GGWCC 3 cut(s) 64, 944, 977
BmgT120I GGNCC 3 cut(s) 64, 944, 977
BmiI GGNNCC 2 cut(s) 11, 318
BmrFI CCNGG 1 cut(s) 879
BmrI ACTGGG 1 cut(s) 921
BmsI GCATC 3 cut(s) 703, 771, 883
BmuI ACTGGG 1 cut(s) 921
BpiI GAAGAC 2 cut(s) 84, 286
BpmI CTGGAG 1 cut(s) 414
Bpu10I CCTNAGC 1 cut(s) 519
BpuEI CTTGAG 1 cut(s) 935
BpuMI CCSGG 1 cut(s) 879
BsaBI GATNNNNATC 1 cut(s) 273
BsaJI CCNNGG 1 cut(s) 196
BsaWI WCCGGW 1 cut(s) 146
BsaXI ACNNNNNCTCC 2 cut(s) 396, 426
Bsc4I CCNNNNNNNGG 5 cut(s) 337, 366, 456, 771, 974
Bse118I RCCGGY 1 cut(s) 146
Bse1I ACTGG 3 cut(s) 331, 908, 916
Bse8I GATNNNNATC 1 cut(s) 273
BseDI CCNNGG 1 cut(s) 196
BseGI GGATG 3 cut(s) 718, 776, 874
BseJI GATNNNNATC 1 cut(s) 273
BseLI CCNNNNNNNGG 5 cut(s) 337, 366, 456, 771, 974
BseMII CTCAG 3 cut(s) 510, 643, 713
BseNI ACTGG 3 cut(s) 331, 908, 916
BseRI GAGGAG 1 cut(s) 716
BseXI GCAGC 2 cut(s) 771, 974
Bsh1236I CGCG 1 cut(s) 137
BshTI ACCGGT 1 cut(s) 146
BsiSI CCGG 3 cut(s) 147, 181, 879
BslFI GGGAC 1 cut(s) 928
BslI CCNNNNNNNGG 5 cut(s) 337, 366, 456, 771, 974
BsmAI GTCTC 1 cut(s) 625
BsmFI GGGAC 1 cut(s) 928
BsmI GAATGC 2 cut(s) 114, 530
Bsp143I GATC 5 cut(s) 9, 268, 316, 445, 895
BspACI CCGC 2 cut(s) 137, 938
BspCNI CTCAG 3 cut(s) 511, 642, 714
BspFNI CGCG 1 cut(s) 137
BspHI TCATGA 1 cut(s) 265
BspLI GGNNCC 2 cut(s) 11, 318
BspMAI CTGCAG 1 cut(s) 601
BspMI ACCTGC 1 cut(s) 932
BspPI GGATC 5 cut(s) 4, 17, 311, 324, 440
BspQI GCTCTTC 2 cut(s) 576, 966
BsrFI RCCGGY 1 cut(s) 146
BsrI ACTGG 3 cut(s) 331, 908, 916
BssAI RCCGGY 1 cut(s) 146
BssECI CCNNGG 1 cut(s) 196
BssMI GATC 5 cut(s) 9, 268, 316, 445, 895
Bst4CI ACNGT 2 cut(s) 484, 869
Bst6I CTCTTC 2 cut(s) 576, 966
BstC8I GCNNGC 2 cut(s) 193, 368
BstDEI CTNAG 4 cut(s) 323, 519, 629, 722
BstEII GGTNACC 1 cut(s) 142
BstENI CCTNNNNNAGG 1 cut(s) 364
BstF5I GGATG 3 cut(s) 718, 776, 874
BstFNI CGCG 1 cut(s) 137
BstKTI GATC 5 cut(s) 12, 271, 319, 448, 898
BstMAI GTCTC 1 cut(s) 625
BstMBI GATC 5 cut(s) 9, 268, 316, 445, 895
BstPI GGTNACC 1 cut(s) 142
BstSCI CCNGG 1 cut(s) 877
BstSFI CTRYAG 2 cut(s) 597, 981
BstUI CGCG 1 cut(s) 137
BstV1I GCAGC 2 cut(s) 771, 974
BstV2I GAAGAC 2 cut(s) 84, 286
BstX2I RGATCY 2 cut(s) 9, 316
BstYI RGATCY 2 cut(s) 9, 316
BsuI GTATCC 2 cut(s) 34, 858
BtsCI GGATG 3 cut(s) 718, 776, 874
BveI ACCTGC 1 cut(s) 932
Cac8I GCNNGC 2 cut(s) 193, 368
CciI TCATGA 1 cut(s) 265
Cfr10I RCCGGY 1 cut(s) 146
Cfr13I GGNCC 3 cut(s) 64, 944, 977
CseI GACGC 1 cut(s) 316
Csp6I GTAC 2 cut(s) 133, 859
CspAI ACCGGT 1 cut(s) 146
CviAII CATG 4 cut(s) 266, 281, 353, 737
CviQI GTAC 2 cut(s) 133, 859
DdeI CTNAG 4 cut(s) 323, 519, 629, 722
DpnI GATC 5 cut(s) 11, 270, 318, 447, 897
DpnII GATC 5 cut(s) 9, 268, 316, 445, 895
Eam1104I CTCTTC 2 cut(s) 576, 966
EarI CTCTTC 2 cut(s) 576, 966
Eco32I GATATC 1 cut(s) 376
Eco47I GGWCC 3 cut(s) 64, 944, 977
Eco91I GGTNACC 1 cut(s) 142
EcoNI CCTNNNNNAGG 1 cut(s) 364
EcoO109I RGGNCCY 2 cut(s) 944, 977
EcoO65I GGTNACC 1 cut(s) 142
EcoRV GATATC 1 cut(s) 376
FaeI CATG 4 cut(s) 269, 284, 356, 740
FaqI GGGAC 1 cut(s) 928
FatI CATG 4 cut(s) 265, 280, 352, 736
FbaI TGATCA 1 cut(s) 268
Fnu4HI GCNGC 3 cut(s) 785, 939, 988
FokI GGATG 3 cut(s) 725, 783, 861
Fsp4HI GCNGC 3 cut(s) 785, 939, 988
FspBI CTAG 2 cut(s) 188, 399
GluI GCNGC 3 cut(s) 785, 939, 988
GsuI CTGGAG 1 cut(s) 414
HapII CCGG 3 cut(s) 147, 181, 879
HgaI GACGC 1 cut(s) 316
Hin1II CATG 4 cut(s) 269, 284, 356, 740
HincII GTYRAC 4 cut(s) 216, 478, 865, 889
HindII GTYRAC 4 cut(s) 216, 478, 865, 889
HindIII AAGCTT 1 cut(s) 91
HinfI GANTC 4 cut(s) 649, 729, 831, 922
HpaII CCGG 3 cut(s) 147, 181, 879
Hpy166II GTNNAC 6 cut(s) 67, 216, 478, 638, 865, 889
Hpy188I TCNGA 2 cut(s) 723, 1022
Hpy188III TCNNGA 3 cut(s) 266, 583, 631
Hpy8I GTNNAC 6 cut(s) 67, 216, 478, 638, 865, 889
HpyAV CCTTC 2 cut(s) 234, 798
HpyCH4III ACNGT 2 cut(s) 484, 869
HpyCH4IV ACGT 1 cut(s) 861
HpyCH4V TGCA 6 cut(s) 101, 599, 716, 736, 874, 928
HpyF3I CTNAG 4 cut(s) 323, 519, 629, 722
HpySE526I ACGT 1 cut(s) 861
Hsp92II CATG 4 cut(s) 269, 284, 356, 740
Ksp22I TGATCA 1 cut(s) 268
Kzo9I GATC 5 cut(s) 9, 268, 316, 445, 895
LguI GCTCTTC 2 cut(s) 576, 966
LmnI GCTCC 4 cut(s) 122, 264, 395, 602
Lsp1109I GCAGC 2 cut(s) 771, 974
LweI GCATC 3 cut(s) 703, 771, 883
MaeI CTAG 2 cut(s) 188, 399
MaeII ACGT 1 cut(s) 861
MaeIII GTNAC 3 cut(s) 49, 142, 559
MalI GATC 5 cut(s) 11, 270, 318, 447, 897
MboI GATC 5 cut(s) 9, 268, 316, 445, 895
MboII GAAGA 7 cut(s) 89, 269, 286, 434, 563, 738, 953
MflI RGATCY 2 cut(s) 9, 316
MluCI AATT 4 cut(s) 343, 538, 609, 751
MlyI GAGTC 1 cut(s) 916
MmeI TCCRAC 1 cut(s) 294
MseI TTAA 1 cut(s) 384
MslI CAYNNNNRTG 3 cut(s) 206, 279, 285
MspI CCGG 3 cut(s) 147, 181, 879
MspR9I CCNGG 1 cut(s) 879
Mva1269I GAATGC 2 cut(s) 114, 530
MvnI CGCG 1 cut(s) 137
NciI CCSGG 1 cut(s) 879
NdeII GATC 5 cut(s) 9, 268, 316, 445, 895
NlaIII CATG 4 cut(s) 269, 284, 356, 740
NlaIV GGNNCC 2 cut(s) 11, 318
NmeAIII GCCGAG 1 cut(s) 221
NmuCI GTSAC 1 cut(s) 559
PagI TCATGA 1 cut(s) 265
PciSI GCTCTTC 2 cut(s) 576, 966
PctI GAATGC 2 cut(s) 114, 530
PfeI GAWTC 3 cut(s) 649, 729, 831
PflMI CCANNNNNTGG 3 cut(s) 337, 456, 771
PinAI ACCGGT 1 cut(s) 146
PkrI GCNGC 3 cut(s) 786, 940, 989
PleI GAGTC 1 cut(s) 916
PpsI GAGTC 1 cut(s) 916
PpuMI RGGWCCY 2 cut(s) 944, 977
Psp5II RGGWCCY 2 cut(s) 944, 977
PspEI GGTNACC 1 cut(s) 142
PspN4I GGNNCC 2 cut(s) 11, 318
PspPI GGNCC 3 cut(s) 64, 944, 977
PspPPI RGGWCCY 2 cut(s) 944, 977
PsrI GAACNNNNNNTAC 2 cut(s) 524, 556
PstI CTGCAG 1 cut(s) 601
PsuI RGATCY 2 cut(s) 9, 316
RsaI GTAC 2 cut(s) 134, 860
RsaNI GTAC 2 cut(s) 133, 859
RseI CAYNNNNRTG 3 cut(s) 206, 279, 285
SapI GCTCTTC 2 cut(s) 576, 966
SaqAI TTAA 1 cut(s) 384
SatI GCNGC 3 cut(s) 785, 939, 988
Sau3AI GATC 5 cut(s) 9, 268, 316, 445, 895
Sau96I GGNCC 3 cut(s) 64, 944, 977
SchI GAGTC 1 cut(s) 916
ScrFI CCNGG 1 cut(s) 879
SfaNI GCATC 3 cut(s) 703, 771, 883
SfcI CTRYAG 2 cut(s) 597, 981
SinI GGWCC 3 cut(s) 64, 944, 977
SmiMI CAYNNNNRTG 3 cut(s) 206, 279, 285
SmlI CTYRAG 1 cut(s) 950
SmoI CTYRAG 1 cut(s) 950
Sse9I AATT 4 cut(s) 343, 538, 609, 751
SsiI CCGC 2 cut(s) 137, 938
SspMI CTAG 2 cut(s) 188, 399
StyD4I CCNGG 1 cut(s) 877
TaaI ACNGT 2 cut(s) 484, 869
TaiI ACGT 1 cut(s) 864
TasI AATT 4 cut(s) 343, 538, 609, 751
TauI GCSGC 1 cut(s) 941
TfiI GAWTC 3 cut(s) 649, 729, 831
Tru1I TTAA 1 cut(s) 384
Tru9I TTAA 1 cut(s) 384
TseFI GTSAC 1 cut(s) 559
TseI GCWGC 2 cut(s) 784, 987
Tsp45I GTSAC 1 cut(s) 559
TspDTI ATGAA 6 cut(s) 14, 21, 269, 337, 687, 780
TspGWI ACGGA 2 cut(s) 53, 578
Van91I CCANNNNNTGG 3 cut(s) 337, 456, 771
VpaK11BI GGWCC 3 cut(s) 64, 944, 977
XagI CCTNNNNNAGG 1 cut(s) 364
XapI RAATTY 2 cut(s) 343, 751
XspI CTAG 2 cut(s) 188, 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.