RchiOBHm_Chr5g0049671

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0016796
Physical Location & Seq
Reverse (-)
47522842 .. 47524626
1785 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32730

Sequence Viewer

Length: 1023 bp
ATGACTTGGATCCACTTATCAGTTCATAGTTCATACACGGATACACCCGTAACACCTTTTGAGGTCCACAGACTTGAAGACCATAATCCAAGCTTTACTGCAACAATGGGAAGCATTCAGGGAGCAGAGAGGTACGCGGTGGTTACCGGTGCGAACAAGGGTATCGGGTTTGAGGTAGTCCGGCAACTAGCGTGCCGAGGCATTGTGGTGGTGTTGACGGCGAGAGATGAGAAAAGGGGAAGGGAAGCCACAGCCAAGCTCCATCATGATCATCATCTTCATGCCAATGTAGTCTTCCATCAGCTTGATGTGTTGGATCCACTTAGCGTCCAGTCTTTGGCAAATTTCATACATGACACCTTTGGCAGGCTTGATATCTTGGTTAATAACGCTGGAGCTAGTGGAGTTTTGGTTGTTGAGGAAGAACTCAAAGCCCTGAACATTGATCCCACCTCTTGGCTTTCAGGTCAAGCAGTCAACACAGTTCAAGGTGCTATAAAATCAACTTACGAAAAGGCTGAGGAATGCTTGAACACCAATTACTATGGTGTCAAAAGAGTGACGGAGGCTCTTCTCCCACTCTTGAAACTCTCTACTGCAGGAGCAAGAATTGTCAATGTCTCATCTCTCAGGAGTGAACTAAAGAGGATTCCAAGTGAAGCGATAAGGAATGAACTTGGAAATGTAGAAGCATTGACAGAGGAGAAAGTGGATGCAGTTCTGAGAAGATTCCTGCATGATTTCAAAGAAAATTCACTTGAAGCCAATGGATGGACAATGATGCTGCCTTCATATAGCATTTCAAAGGCAACCCTGAACGCCTACACAAGAATCCTTGCCAAGAAGTATCCCAAAATGTACGTCAACTGTGTGCATCCCGGTTTTGTCAACACCGATCTCAACTGGCATACTGGGACAATGACTCTGCAAGAGGGGGCGGCAGGTCCTCTCAAGTTGGCTCTTCTACCAGATGGAGGACCTACAGGCTGCTATTTCTATCAAACTGAAGTAGCAGACTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short

Protein Analysis

340

Amino Acids

37.54

Weight (kDa)

6.27

Isoelectric Point (pI)

31.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 45 - 213 6.2e-24 short chain dehydrogenase
adh_short_C2 PF13561 50 - 160 6.2e-14 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016796)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g27110
malus_domestica MD00G1032200.v1.1 MD11G1179400.v1.1
prunus_persica Prupe.6G151900_v2.0.a1
pyrus_communis pycom03g11580 pycom11g15490
rosa_chinensis RchiOBHm_Chr5g0049671
rosa_laevigata RLG00000034632
rosa_roxburghii Rroxscaffold_1G00031560
rosa_rugosa Rorug05G0250400
rosa_samantha Rh5BG337500 Rh5CG362200 Rh5DG349700
rosa_wichuraiana Rw5G030840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 932
AccB7I CCANNNNNTGG 3 cut(s) 337, 456, 771
AccII CGCG 1 cut(s) 137
AciI CCGC 2 cut(s) 137, 938
AclWI GGATC 5 cut(s) 4, 17, 311, 324, 440
AcsI RAATTY 2 cut(s) 343, 751
AfaI GTAC 2 cut(s) 134, 860
AfiI CCNNNNNNNGG 5 cut(s) 337, 366, 456, 771, 974
AgeI ACCGGT 1 cut(s) 146
AgsI TTSAA 7 cut(s) 77, 488, 532, 586, 745, 761, 804
AjuI GAANNNNNNNTTGG 2 cut(s) 278, 310
AluBI AGCT 4 cut(s) 93, 259, 304, 398
AluI AGCT 4 cut(s) 93, 259, 304, 398
Alw26I GTCTC 1 cut(s) 625
AlwI GGATC 5 cut(s) 4, 17, 311, 324, 440
ApeKI GCWGC 2 cut(s) 784, 987
ApoI RAATTY 2 cut(s) 343, 751
ArsI GACNNNNNNTTYG 2 cut(s) 846, 878
AsiGI ACCGGT 1 cut(s) 146
AspS9I GGNCC 3 cut(s) 64, 944, 977
AsuC2I CCSGG 1 cut(s) 879
AvaII GGWCC 3 cut(s) 64, 944, 977
BaeI ACNNNNGTAYC 4 cut(s) 33, 66, 145, 178
BamHI GGATCC 2 cut(s) 9, 316
BbsI GAAGAC 2 cut(s) 84, 286
BbvCI CCTCAGC 1 cut(s) 519
BbvI GCAGC 2 cut(s) 771, 974
BccI CCATC 4 cut(s) 270, 306, 765, 965
BceAI ACGGC 1 cut(s) 234
BciVI GTATCC 2 cut(s) 34, 858
BclI TGATCA 1 cut(s) 268
BcnI CCSGG 1 cut(s) 879
BcoDI GTCTC 1 cut(s) 625
BfaI CTAG 2 cut(s) 188, 399
BfmI CTRYAG 2 cut(s) 597, 981
BfuAI ACCTGC 1 cut(s) 932
BfuI GTATCC 2 cut(s) 34, 858
BisI GCNGC 3 cut(s) 785, 939, 988
BlsI GCNGC 3 cut(s) 786, 940, 989
Bme1390I CCNGG 1 cut(s) 879
Bme18I GGWCC 3 cut(s) 64, 944, 977
BmgT120I GGNCC 3 cut(s) 64, 944, 977
BmiI GGNNCC 2 cut(s) 11, 318
BmrFI CCNGG 1 cut(s) 879
BmrI ACTGGG 1 cut(s) 921
BmsI GCATC 3 cut(s) 703, 771, 883
BmuI ACTGGG 1 cut(s) 921
BpiI GAAGAC 2 cut(s) 84, 286
BpmI CTGGAG 1 cut(s) 414
Bpu10I CCTNAGC 1 cut(s) 519
BpuEI CTTGAG 1 cut(s) 935
BpuMI CCSGG 1 cut(s) 879
BsaBI GATNNNNATC 1 cut(s) 273
BsaJI CCNNGG 1 cut(s) 196
BsaWI WCCGGW 1 cut(s) 146
BsaXI ACNNNNNCTCC 2 cut(s) 396, 426
Bsc4I CCNNNNNNNGG 5 cut(s) 337, 366, 456, 771, 974
Bse118I RCCGGY 1 cut(s) 146
Bse1I ACTGG 3 cut(s) 331, 908, 916
Bse8I GATNNNNATC 1 cut(s) 273
BseDI CCNNGG 1 cut(s) 196
BseGI GGATG 3 cut(s) 718, 776, 874
BseJI GATNNNNATC 1 cut(s) 273
BseLI CCNNNNNNNGG 5 cut(s) 337, 366, 456, 771, 974
BseMII CTCAG 3 cut(s) 510, 643, 713
BseNI ACTGG 3 cut(s) 331, 908, 916
BseRI GAGGAG 1 cut(s) 716
BseXI GCAGC 2 cut(s) 771, 974
Bsh1236I CGCG 1 cut(s) 137
BshTI ACCGGT 1 cut(s) 146
BsiSI CCGG 3 cut(s) 147, 181, 879
BslFI GGGAC 1 cut(s) 928
BslI CCNNNNNNNGG 5 cut(s) 337, 366, 456, 771, 974
BsmAI GTCTC 1 cut(s) 625
BsmFI GGGAC 1 cut(s) 928
BsmI GAATGC 2 cut(s) 114, 530
Bsp143I GATC 5 cut(s) 9, 268, 316, 445, 895
BspACI CCGC 2 cut(s) 137, 938
BspCNI CTCAG 3 cut(s) 511, 642, 714
BspFNI CGCG 1 cut(s) 137
BspHI TCATGA 1 cut(s) 265
BspLI GGNNCC 2 cut(s) 11, 318
BspMAI CTGCAG 1 cut(s) 601
BspMI ACCTGC 1 cut(s) 932
BspPI GGATC 5 cut(s) 4, 17, 311, 324, 440
BspQI GCTCTTC 2 cut(s) 576, 966
BsrFI RCCGGY 1 cut(s) 146
BsrI ACTGG 3 cut(s) 331, 908, 916
BssAI RCCGGY 1 cut(s) 146
BssECI CCNNGG 1 cut(s) 196
BssMI GATC 5 cut(s) 9, 268, 316, 445, 895
Bst4CI ACNGT 2 cut(s) 484, 869
Bst6I CTCTTC 2 cut(s) 576, 966
BstC8I GCNNGC 2 cut(s) 193, 368
BstDEI CTNAG 4 cut(s) 323, 519, 629, 722
BstEII GGTNACC 1 cut(s) 142
BstENI CCTNNNNNAGG 1 cut(s) 364
BstF5I GGATG 3 cut(s) 718, 776, 874
BstFNI CGCG 1 cut(s) 137
BstKTI GATC 5 cut(s) 12, 271, 319, 448, 898
BstMAI GTCTC 1 cut(s) 625
BstMBI GATC 5 cut(s) 9, 268, 316, 445, 895
BstPI GGTNACC 1 cut(s) 142
BstSCI CCNGG 1 cut(s) 877
BstSFI CTRYAG 2 cut(s) 597, 981
BstUI CGCG 1 cut(s) 137
BstV1I GCAGC 2 cut(s) 771, 974
BstV2I GAAGAC 2 cut(s) 84, 286
BstX2I RGATCY 2 cut(s) 9, 316
BstYI RGATCY 2 cut(s) 9, 316
BsuI GTATCC 2 cut(s) 34, 858
BtsCI GGATG 3 cut(s) 718, 776, 874
BveI ACCTGC 1 cut(s) 932
Cac8I GCNNGC 2 cut(s) 193, 368
CciI TCATGA 1 cut(s) 265
Cfr10I RCCGGY 1 cut(s) 146
Cfr13I GGNCC 3 cut(s) 64, 944, 977
CseI GACGC 1 cut(s) 316
Csp6I GTAC 2 cut(s) 133, 859
CspAI ACCGGT 1 cut(s) 146
CviAII CATG 4 cut(s) 266, 281, 353, 737
CviQI GTAC 2 cut(s) 133, 859
DdeI CTNAG 4 cut(s) 323, 519, 629, 722
DpnI GATC 5 cut(s) 11, 270, 318, 447, 897
DpnII GATC 5 cut(s) 9, 268, 316, 445, 895
Eam1104I CTCTTC 2 cut(s) 576, 966
EarI CTCTTC 2 cut(s) 576, 966
Eco32I GATATC 1 cut(s) 376
Eco47I GGWCC 3 cut(s) 64, 944, 977
Eco91I GGTNACC 1 cut(s) 142
EcoNI CCTNNNNNAGG 1 cut(s) 364
EcoO109I RGGNCCY 2 cut(s) 944, 977
EcoO65I GGTNACC 1 cut(s) 142
EcoRV GATATC 1 cut(s) 376
FaeI CATG 4 cut(s) 269, 284, 356, 740
FaqI GGGAC 1 cut(s) 928
FatI CATG 4 cut(s) 265, 280, 352, 736
FbaI TGATCA 1 cut(s) 268
Fnu4HI GCNGC 3 cut(s) 785, 939, 988
FokI GGATG 3 cut(s) 725, 783, 861
Fsp4HI GCNGC 3 cut(s) 785, 939, 988
FspBI CTAG 2 cut(s) 188, 399
GluI GCNGC 3 cut(s) 785, 939, 988
GsuI CTGGAG 1 cut(s) 414
HapII CCGG 3 cut(s) 147, 181, 879
HgaI GACGC 1 cut(s) 316
Hin1II CATG 4 cut(s) 269, 284, 356, 740
HincII GTYRAC 4 cut(s) 216, 478, 865, 889
HindII GTYRAC 4 cut(s) 216, 478, 865, 889
HindIII AAGCTT 1 cut(s) 91
HinfI GANTC 4 cut(s) 649, 729, 831, 922
HpaII CCGG 3 cut(s) 147, 181, 879
Hpy166II GTNNAC 6 cut(s) 67, 216, 478, 638, 865, 889
Hpy188I TCNGA 2 cut(s) 723, 1022
Hpy188III TCNNGA 3 cut(s) 266, 583, 631
Hpy8I GTNNAC 6 cut(s) 67, 216, 478, 638, 865, 889
HpyAV CCTTC 2 cut(s) 234, 798
HpyCH4III ACNGT 2 cut(s) 484, 869
HpyCH4IV ACGT 1 cut(s) 861
HpyCH4V TGCA 6 cut(s) 101, 599, 716, 736, 874, 928
HpyF3I CTNAG 4 cut(s) 323, 519, 629, 722
HpySE526I ACGT 1 cut(s) 861
Hsp92II CATG 4 cut(s) 269, 284, 356, 740
Ksp22I TGATCA 1 cut(s) 268
Kzo9I GATC 5 cut(s) 9, 268, 316, 445, 895
LguI GCTCTTC 2 cut(s) 576, 966
LmnI GCTCC 4 cut(s) 122, 264, 395, 602
Lsp1109I GCAGC 2 cut(s) 771, 974
LweI GCATC 3 cut(s) 703, 771, 883
MaeI CTAG 2 cut(s) 188, 399
MaeII ACGT 1 cut(s) 861
MaeIII GTNAC 3 cut(s) 49, 142, 559
MalI GATC 5 cut(s) 11, 270, 318, 447, 897
MboI GATC 5 cut(s) 9, 268, 316, 445, 895
MboII GAAGA 7 cut(s) 89, 269, 286, 434, 563, 738, 953
MflI RGATCY 2 cut(s) 9, 316
MluCI AATT 4 cut(s) 343, 538, 609, 751
MlyI GAGTC 1 cut(s) 916
MmeI TCCRAC 1 cut(s) 294
MseI TTAA 1 cut(s) 384
MslI CAYNNNNRTG 3 cut(s) 206, 279, 285
MspI CCGG 3 cut(s) 147, 181, 879
MspR9I CCNGG 1 cut(s) 879
Mva1269I GAATGC 2 cut(s) 114, 530
MvnI CGCG 1 cut(s) 137
NciI CCSGG 1 cut(s) 879
NdeII GATC 5 cut(s) 9, 268, 316, 445, 895
NlaIII CATG 4 cut(s) 269, 284, 356, 740
NlaIV GGNNCC 2 cut(s) 11, 318
NmeAIII GCCGAG 1 cut(s) 221
NmuCI GTSAC 1 cut(s) 559
PagI TCATGA 1 cut(s) 265
PciSI GCTCTTC 2 cut(s) 576, 966
PctI GAATGC 2 cut(s) 114, 530
PfeI GAWTC 3 cut(s) 649, 729, 831
PflMI CCANNNNNTGG 3 cut(s) 337, 456, 771
PinAI ACCGGT 1 cut(s) 146
PkrI GCNGC 3 cut(s) 786, 940, 989
PleI GAGTC 1 cut(s) 916
PpsI GAGTC 1 cut(s) 916
PpuMI RGGWCCY 2 cut(s) 944, 977
Psp5II RGGWCCY 2 cut(s) 944, 977
PspEI GGTNACC 1 cut(s) 142
PspN4I GGNNCC 2 cut(s) 11, 318
PspPI GGNCC 3 cut(s) 64, 944, 977
PspPPI RGGWCCY 2 cut(s) 944, 977
PsrI GAACNNNNNNTAC 2 cut(s) 524, 556
PstI CTGCAG 1 cut(s) 601
PsuI RGATCY 2 cut(s) 9, 316
RsaI GTAC 2 cut(s) 134, 860
RsaNI GTAC 2 cut(s) 133, 859
RseI CAYNNNNRTG 3 cut(s) 206, 279, 285
SapI GCTCTTC 2 cut(s) 576, 966
SaqAI TTAA 1 cut(s) 384
SatI GCNGC 3 cut(s) 785, 939, 988
Sau3AI GATC 5 cut(s) 9, 268, 316, 445, 895
Sau96I GGNCC 3 cut(s) 64, 944, 977
SchI GAGTC 1 cut(s) 916
ScrFI CCNGG 1 cut(s) 879
SfaNI GCATC 3 cut(s) 703, 771, 883
SfcI CTRYAG 2 cut(s) 597, 981
SinI GGWCC 3 cut(s) 64, 944, 977
SmiMI CAYNNNNRTG 3 cut(s) 206, 279, 285
SmlI CTYRAG 1 cut(s) 950
SmoI CTYRAG 1 cut(s) 950
Sse9I AATT 4 cut(s) 343, 538, 609, 751
SsiI CCGC 2 cut(s) 137, 938
SspMI CTAG 2 cut(s) 188, 399
StyD4I CCNGG 1 cut(s) 877
TaaI ACNGT 2 cut(s) 484, 869
TaiI ACGT 1 cut(s) 864
TasI AATT 4 cut(s) 343, 538, 609, 751
TauI GCSGC 1 cut(s) 941
TfiI GAWTC 3 cut(s) 649, 729, 831
Tru1I TTAA 1 cut(s) 384
Tru9I TTAA 1 cut(s) 384
TseFI GTSAC 1 cut(s) 559
TseI GCWGC 2 cut(s) 784, 987
Tsp45I GTSAC 1 cut(s) 559
TspDTI ATGAA 6 cut(s) 14, 21, 269, 337, 687, 780
TspGWI ACGGA 2 cut(s) 53, 578
Van91I CCANNNNNTGG 3 cut(s) 337, 456, 771
VpaK11BI GGWCC 3 cut(s) 64, 944, 977
XagI CCTNNNNNAGG 1 cut(s) 364
XapI RAATTY 2 cut(s) 343, 751
XspI CTAG 2 cut(s) 188, 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.