Rorug05G0250400

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0016796
Physical Location & Seq
Reverse (-)
27471531 .. 27471782
252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0250400.1

Sequence Viewer

Length: 252 bp
ATGGGCGGCAAACAAAGGCAGGTGTGCAAGTTTGAGATGGAATTGAAGTCGATGATGCCGCAGAAGATGAATGGTTTTGCCGCAGCAGAGTCGTCATCATCATCAACTGGTAATAATCAGGCCAAAACGACGTTGCGTGTGTTTGGTGGTAGAGTAAATCACCAGTCACAGAGAACGACCGTTGATGATGAGAGAAGAAGAAGAGAGAAGGCTGAAAATCTGGTGCACTTGATTTGCTGGGGACCCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short

Protein Analysis

83

Amino Acids

9.36

Weight (kDa)

10.03

Isoelectric Point (pI)

65.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3774 PF12609 6 - 82 1e-05 Wound-induced protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016796)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g27110
malus_domestica MD00G1032200.v1.1 MD11G1179400.v1.1
prunus_persica Prupe.6G151900_v2.0.a1
pyrus_communis pycom03g11580 pycom11g15490
rosa_chinensis RchiOBHm_Chr5g0049671
rosa_laevigata RLG00000034632
rosa_roxburghii Rroxscaffold_1G00031560
rosa_rugosa Rorug05G0250400
rosa_samantha Rh5BG337500 Rh5CG362200 Rh5DG349700
rosa_wichuraiana Rw5G030840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 10
Acc36I ACCTGC 1 cut(s) 10
AciI CCGC 3 cut(s) 6, 59, 81
AgsI TTSAA 1 cut(s) 46
Alw21I GWGCWC 1 cut(s) 228
Alw44I GTGCAC 1 cut(s) 224
AoxI GGCC 1 cut(s) 120
ApaLI GTGCAC 1 cut(s) 224
ApeKI GCWGC 1 cut(s) 83
AspS9I GGNCC 1 cut(s) 242
AsuHPI GGTGA 1 cut(s) 152
AvaII GGWCC 1 cut(s) 242
BaeGI GKGCMC 1 cut(s) 228
Bbv12I GWGCWC 1 cut(s) 228
BbvI GCAGC 1 cut(s) 95
BccI CCATC 1 cut(s) 31
BcgI CGANNNNNNTGC 2 cut(s) 72, 106
BfuAI ACCTGC 1 cut(s) 10
BisI GCNGC 4 cut(s) 7, 59, 81, 84
BlsI GCNGC 4 cut(s) 8, 60, 82, 85
Bme18I GGWCC 1 cut(s) 242
BmgT120I GGNCC 1 cut(s) 242
BmiI GGNNCC 2 cut(s) 243, 244
BmrI ACTGGG 1 cut(s) 240
BmsI GCATC 1 cut(s) 45
BmuI ACTGGG 1 cut(s) 240
Bse1I ACTGG 3 cut(s) 112, 163, 246
BseNI ACTGG 3 cut(s) 112, 163, 246
BseSI GKGCMC 1 cut(s) 228
BseXI GCAGC 1 cut(s) 95
BseYI CCCAGC 1 cut(s) 237
Bsh1285I CGRYCG 1 cut(s) 180
BshFI GGCC 1 cut(s) 122
BsiEI CGRYCG 1 cut(s) 180
BsiHKAI GWGCWC 1 cut(s) 228
BsnI GGCC 1 cut(s) 122
Bsp1286I GDGCHC 1 cut(s) 228
BspACI CCGC 3 cut(s) 6, 59, 81
BspANI GGCC 1 cut(s) 122
BspLI GGNNCC 2 cut(s) 243, 244
BspMI ACCTGC 1 cut(s) 10
BsrI ACTGG 3 cut(s) 112, 163, 246
Bst4CI ACNGT 1 cut(s) 181
Bst6I CTCTTC 1 cut(s) 196
BstMCI CGRYCG 1 cut(s) 180
BstSLI GKGCMC 1 cut(s) 228
BstV1I GCAGC 1 cut(s) 95
BsuRI GGCC 1 cut(s) 122
BveI ACCTGC 1 cut(s) 10
Cfr13I GGNCC 1 cut(s) 242
CviJI RGCY 2 cut(s) 122, 212
CviKI_1 RGCY 2 cut(s) 122, 212
Eam1104I CTCTTC 1 cut(s) 196
EarI CTCTTC 1 cut(s) 196
Eco47I GGWCC 1 cut(s) 242
EcoO109I RGGNCCY 1 cut(s) 242
Fnu4HI GCNGC 4 cut(s) 7, 59, 81, 84
Fsp4HI GCNGC 4 cut(s) 7, 59, 81, 84
GluI GCNGC 4 cut(s) 7, 59, 81, 84
GsaI CCCAGC 1 cut(s) 241
HaeIII GGCC 1 cut(s) 122
HinfI GANTC 1 cut(s) 89
HphI GGTGA 1 cut(s) 152
Hpy166II GTNNAC 1 cut(s) 226
Hpy8I GTNNAC 1 cut(s) 226
Hpy99I CGWCG 1 cut(s) 133
HpyAV CCTTC 1 cut(s) 202
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4IV ACGT 1 cut(s) 131
HpyCH4V TGCA 2 cut(s) 27, 226
HpySE526I ACGT 1 cut(s) 131
KflI GGGWCCC 1 cut(s) 242
LpnPI CCDG 6 cut(s) 5, 93, 104, 176, 206, 223
Lsp1109I GCAGC 1 cut(s) 95
LweI GCATC 1 cut(s) 45
MaeII ACGT 1 cut(s) 131
MaeIII GTNAC 1 cut(s) 165
MboII GAAGA 4 cut(s) 76, 207, 210, 213
MhlI GDGCHC 1 cut(s) 228
MluCI AATT 1 cut(s) 41
MlyI GAGTC 1 cut(s) 98
MseI TTAA 1 cut(s) 250
NlaIV GGNNCC 2 cut(s) 243, 244
NmuCI GTSAC 1 cut(s) 165
PaqCI CACCTGC 1 cut(s) 10
PkrI GCNGC 4 cut(s) 8, 60, 82, 85
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
PpuMI RGGWCCY 1 cut(s) 242
Psp5II RGGWCCY 1 cut(s) 242
PspFI CCCAGC 1 cut(s) 237
PspN4I GGNNCC 2 cut(s) 243, 244
PspPI GGNCC 1 cut(s) 242
PspPPI RGGWCCY 1 cut(s) 242
SaqAI TTAA 1 cut(s) 250
SatI GCNGC 4 cut(s) 7, 59, 81, 84
Sau96I GGNCC 1 cut(s) 242
SchI GAGTC 1 cut(s) 98
SduI GDGCHC 1 cut(s) 228
SetI ASST 2 cut(s) 24, 134
SfaNI GCATC 1 cut(s) 45
SgeI CNNG 8 cut(s) 32, 40, 120, 131, 149, 175, 233, 241
SinI GGWCC 1 cut(s) 242
Sse9I AATT 1 cut(s) 41
SsiI CCGC 3 cut(s) 6, 59, 81
TaaI ACNGT 1 cut(s) 181
TaiI ACGT 1 cut(s) 134
TaqI TCGA 1 cut(s) 50
TasI AATT 1 cut(s) 41
TauI GCSGC 3 cut(s) 9, 61, 83
Tru1I TTAA 1 cut(s) 250
Tru9I TTAA 1 cut(s) 250
TseFI GTSAC 1 cut(s) 165
TseI GCWGC 1 cut(s) 83
Tsp45I GTSAC 1 cut(s) 165
TspDTI ATGAA 1 cut(s) 83
VneI GTGCAC 1 cut(s) 224
VpaK11BI GGWCC 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.