pycom11g15490

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0016796
Physical Location & Seq
Reverse (-)
16183365 .. 16185787
2423 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g15490.5

Sequence Viewer

Length: 924 bp
ATGGGAAGCAATCAAGAATATGGAGCAGAGACAGAAAGATGTGCGGTGGTTAGCGGTGCAAACAAGGGTATTGGATTTGAGGTGGTGAGGCAGCTTGCATCTCAAGGGGTGGTGGTGGTGTTGACAGCCAGGGATGAGAAGAGGGGAAGAGAAGCAACATCTAAGCTTCAACAGTTGGGTCTGTCAAATGTTGTCTTCCATCAACTTGATGTCTTGAATCCAGTTAGCATCCACTCCTTGGCCAAATTCATAAACGCCAGATTTGGCAGGCTTGATATCTTGGTTAATAATGCTGGAGCTACTGGAGTACTGGTGTCTGAGAAAGATTTAAAATCTCTAGACATTGACTCCACAACTTGGCTTTCAGGCAAAGCAGTCAACCAAATTCAATGTGCAATTAAATACACTTATGAGAAGGCTGAGGAATGTTTGAATACAAATTACTACGGTGTTAAAAGATTAACCGAGGCTCTTCTCCCACTCTTGCAACTCTCCTCTCTAGGAGCAAGAATCGTCAATGTCTCCTCCCTAAGGAGTGAACTCAAGAGGATACCGAGTGAAGAGATAAGAAATGAGCTCGGGGATGTAGAAACATTGACAGAGGAGAAAGTGGATGCAGTTTTGGCAAGATTTCTGCATGATTTTAAACAAAATGAACTCGAAACGAATGGATGGACAATGATGCTGCCTGCATATAGTATTTCCAAGGCCACCCTCAATGCTTACACTAGAATCCTTGCTAACAAGTACCCAAACATGTGCATCAACTGTGTGCATCCTGGCTTTGTCAATACAGACTTCAATTGGCATACAGGGACCATGACTGTCGAAGAAGGGGCTGCCGGTCTGGTCAGGTTGACTCTTCTACCCCATGGAGGCCCTTCCGGCTGCTATTTCGATCGAACTGAAGTCGCAGACTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

308

Amino Acids

33.83

Weight (kDa)

5.93

Isoelectric Point (pI)

30.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016796)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g27110
malus_domestica MD00G1032200.v1.1 MD11G1179400.v1.1
prunus_persica Prupe.6G151900_v2.0.a1
pyrus_communis pycom03g11580 pycom11g15490
rosa_chinensis RchiOBHm_Chr5g0049671
rosa_laevigata RLG00000034632
rosa_roxburghii Rroxscaffold_1G00031560
rosa_rugosa Rorug05G0250400
rosa_samantha Rh5BG337500 Rh5CG362200 Rh5DG349700
rosa_wichuraiana Rw5G030840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 238, 357
AciI CCGC 2 cut(s) 44, 54
AcoI YGGCCR 1 cut(s) 240
AcsI RAATTY 2 cut(s) 245, 384
AfaI GTAC 2 cut(s) 309, 749
AfiI CCNNNNNNNGG 4 cut(s) 238, 357, 531, 875
AflIII ACRYGT 1 cut(s) 756
AgsI TTSAA 5 cut(s) 170, 217, 389, 433, 802
AjnI CCWGG 2 cut(s) 128, 778
AluBI AGCT 4 cut(s) 94, 166, 299, 577
AluI AGCT 4 cut(s) 94, 166, 299, 577
Alw21I GWGCWC 1 cut(s) 579
Alw26I GTCTC 2 cut(s) 23, 526
Ama87I CYCGRG 1 cut(s) 578
AoxI GGCC 3 cut(s) 240, 708, 877
ApeKI GCWGC 4 cut(s) 91, 685, 839, 888
ApoI RAATTY 2 cut(s) 245, 384
AspS9I GGNCC 2 cut(s) 816, 878
AsuHPI GGTGA 1 cut(s) 97
AvaI CYCGRG 1 cut(s) 578
AvaII GGWCC 1 cut(s) 816
AxyI CCTNAGG 1 cut(s) 530
BalI TGGCCA 1 cut(s) 242
BanII GRGCYC 1 cut(s) 579
BbsI GAAGAC 1 cut(s) 187
Bbv12I GWGCWC 1 cut(s) 579
BbvCI CCTCAGC 1 cut(s) 420
BbvI GCAGC 4 cut(s) 103, 672, 826, 875
BccI CCATC 2 cut(s) 207, 666
BciT130I CCWGG 2 cut(s) 130, 780
BciVI GTATCC 1 cut(s) 543
BcoDI GTCTC 2 cut(s) 23, 526
BfaI CTAG 3 cut(s) 338, 500, 729
BfuI GTATCC 1 cut(s) 543
BglI GCCNNNNNGGC 1 cut(s) 885
BisI GCNGC 4 cut(s) 92, 686, 840, 889
BlsI GCNGC 4 cut(s) 93, 687, 841, 890
BmcAI AGTACT 1 cut(s) 309
Bme1390I CCNGG 2 cut(s) 130, 780
Bme18I GGWCC 1 cut(s) 816
BmeT110I CYCGRG 1 cut(s) 578
BmgT120I GGNCC 2 cut(s) 816, 878
BmiI GGNNCC 1 cut(s) 817
BmrFI CCNGG 2 cut(s) 130, 780
BmsI GCATC 6 cut(s) 107, 237, 604, 672, 771, 784
BpiI GAAGAC 1 cut(s) 187
BpmI CTGGAG 2 cut(s) 315, 324
Bpu10I CCTNAGC 1 cut(s) 420
BpuEI CTTGAG 2 cut(s) 87, 527
BsaJI CCNNGG 5 cut(s) 129, 237, 465, 705, 871
BsaXI ACNNNNNCTCC 4 cut(s) 297, 327, 332, 362
Bsc4I CCNNNNNNNGG 4 cut(s) 238, 357, 531, 875
Bse118I RCCGGY 1 cut(s) 842
Bse1I ACTGG 3 cut(s) 221, 307, 315
Bse21I CCTNAGG 1 cut(s) 530
BseBI CCWGG 2 cut(s) 130, 780
BseDI CCNNGG 5 cut(s) 129, 237, 465, 705, 871
BseGI GGATG 6 cut(s) 139, 228, 589, 619, 677, 775
BseLI CCNNNNNNNGG 4 cut(s) 238, 357, 531, 875
BseMII CTCAG 2 cut(s) 309, 411
BseNI ACTGG 3 cut(s) 221, 307, 315
BseRI GAGGAG 3 cut(s) 484, 514, 617
BseXI GCAGC 4 cut(s) 103, 672, 826, 875
Bsh1285I CGRYCG 1 cut(s) 901
BshFI GGCC 3 cut(s) 242, 710, 879
BsiEI CGRYCG 1 cut(s) 901
BsiHKAI GWGCWC 1 cut(s) 579
BsiHKCI CYCGRG 1 cut(s) 578
BsiSI CCGG 2 cut(s) 843, 885
BslFI GGGAC 1 cut(s) 829
BslI CCNNNNNNNGG 4 cut(s) 238, 357, 531, 875
BsmAI GTCTC 2 cut(s) 23, 526
BsmFI GGGAC 1 cut(s) 829
BsnI GGCC 3 cut(s) 242, 710, 879
BsoBI CYCGRG 1 cut(s) 578
Bsp1286I GDGCHC 1 cut(s) 579
Bsp143I GATC 1 cut(s) 898
Bsp19I CCATGG 1 cut(s) 871
BspACI CCGC 2 cut(s) 44, 54
BspANI GGCC 3 cut(s) 242, 710, 879
BspCNI CTCAG 2 cut(s) 310, 412
BspLI GGNNCC 1 cut(s) 817
BspQI GCTCTTC 1 cut(s) 477
BsrFI RCCGGY 1 cut(s) 842
BsrI ACTGG 3 cut(s) 221, 307, 315
BssAI RCCGGY 1 cut(s) 842
BssECI CCNNGG 5 cut(s) 129, 237, 465, 705, 871
BssMI GATC 1 cut(s) 898
BssT1I CCWWGG 3 cut(s) 237, 705, 871
Bst2UI CCWGG 2 cut(s) 130, 780
Bst4CI ACNGT 4 cut(s) 174, 449, 770, 826
Bst6I CTCTTC 5 cut(s) 134, 142, 477, 555, 867
BstC8I GCNNGC 3 cut(s) 96, 269, 690
BstDEI CTNAG 4 cut(s) 162, 318, 420, 530
BstDSI CCRYGG 1 cut(s) 871
BstENI CCTNNNNNAGG 1 cut(s) 529
BstF5I GGATG 6 cut(s) 139, 228, 589, 619, 677, 775
BstKTI GATC 1 cut(s) 901
BstMAI GTCTC 2 cut(s) 23, 526
BstMBI GATC 1 cut(s) 898
BstMCI CGRYCG 1 cut(s) 901
BstMWI GCNNNNNNNGC 2 cut(s) 623, 885
BstNI CCWGG 2 cut(s) 130, 780
BstNSI RCATGY 1 cut(s) 760
BstSCI CCNGG 2 cut(s) 128, 778
BstV1I GCAGC 4 cut(s) 103, 672, 826, 875
BstV2I GAAGAC 1 cut(s) 187
Bsu36I CCTNAGG 1 cut(s) 530
BsuI GTATCC 1 cut(s) 543
BsuRI GGCC 3 cut(s) 242, 710, 879
BtgI CCRYGG 1 cut(s) 871
BtsCI GGATG 6 cut(s) 139, 228, 589, 619, 677, 775
Cac8I GCNNGC 3 cut(s) 96, 269, 690
Cfr10I RCCGGY 1 cut(s) 842
Cfr13I GGNCC 2 cut(s) 816, 878
Csp6I GTAC 2 cut(s) 308, 748
CviAII CATG 4 cut(s) 638, 757, 820, 872
CviQI GTAC 2 cut(s) 308, 748
DdeI CTNAG 4 cut(s) 162, 318, 420, 530
DpnI GATC 1 cut(s) 900
DpnII GATC 1 cut(s) 898
DraI TTTAAA 2 cut(s) 330, 646
EaeI YGGCCR 1 cut(s) 240
Eam1104I CTCTTC 5 cut(s) 134, 142, 477, 555, 867
EarI CTCTTC 5 cut(s) 134, 142, 477, 555, 867
Ecl136II GAGCTC 1 cut(s) 577
Eco130I CCWWGG 3 cut(s) 237, 705, 871
Eco24I GRGCYC 1 cut(s) 579
Eco32I GATATC 1 cut(s) 277
Eco47I GGWCC 1 cut(s) 816
Eco53kI GAGCTC 1 cut(s) 577
Eco81I CCTNAGG 1 cut(s) 530
Eco88I CYCGRG 1 cut(s) 578
EcoICRI GAGCTC 1 cut(s) 577
EcoNI CCTNNNNNAGG 1 cut(s) 529
EcoO109I RGGNCCY 1 cut(s) 878
EcoRII CCWGG 2 cut(s) 128, 778
EcoRV GATATC 1 cut(s) 277
EcoT14I CCWWGG 3 cut(s) 237, 705, 871
EcoT38I GRGCYC 1 cut(s) 579
ErhI CCWWGG 3 cut(s) 237, 705, 871
FaeI CATG 4 cut(s) 641, 760, 823, 875
FaqI GGGAC 1 cut(s) 829
FatI CATG 4 cut(s) 637, 756, 819, 871
Fnu4HI GCNGC 4 cut(s) 92, 686, 840, 889
FokI GGATG 6 cut(s) 146, 215, 596, 626, 684, 762
FriOI GRGCYC 1 cut(s) 579
Fsp4HI GCNGC 4 cut(s) 92, 686, 840, 889
FspBI CTAG 3 cut(s) 338, 500, 729
GluI GCNGC 4 cut(s) 92, 686, 840, 889
GsuI CTGGAG 2 cut(s) 315, 324
HaeIII GGCC 3 cut(s) 242, 710, 879
HapII CCGG 2 cut(s) 843, 885
Hin1II CATG 4 cut(s) 641, 760, 823, 875
HincII GTYRAC 3 cut(s) 123, 379, 858
HindII GTYRAC 3 cut(s) 123, 379, 858
HindIII AAGCTT 1 cut(s) 164
HinfI GANTC 5 cut(s) 217, 347, 510, 732, 859
HpaII CCGG 2 cut(s) 843, 885
HphI GGTGA 1 cut(s) 97
Hpy166II GTNNAC 4 cut(s) 123, 379, 539, 858
Hpy188I TCNGA 1 cut(s) 319
Hpy188III TCNNGA 4 cut(s) 14, 214, 338, 544
Hpy8I GTNNAC 4 cut(s) 123, 379, 539, 858
HpyAV CCTTC 3 cut(s) 409, 827, 891
HpyCH4III ACNGT 4 cut(s) 174, 449, 770, 826
HpyCH4V TGCA 9 cut(s) 59, 98, 395, 487, 617, 637, 692, 762, 775
HpyF10VI GCNNNNNNNGC 2 cut(s) 623, 885
HpyF3I CTNAG 4 cut(s) 162, 318, 420, 530
Hsp92II CATG 4 cut(s) 641, 760, 823, 875
Kzo9I GATC 1 cut(s) 898
LguI GCTCTTC 1 cut(s) 477
LmnI GCTCC 3 cut(s) 23, 296, 503
Lsp1109I GCAGC 4 cut(s) 103, 672, 826, 875
LweI GCATC 6 cut(s) 107, 237, 604, 672, 771, 784
MaeI CTAG 3 cut(s) 338, 500, 729
MalI GATC 1 cut(s) 900
MboI GATC 1 cut(s) 898
MboII GAAGA 7 cut(s) 151, 159, 187, 464, 572, 842, 854
MfeI CAATTG 1 cut(s) 802
MhlI GDGCHC 1 cut(s) 579
MlsI TGGCCA 1 cut(s) 242
MluCI AATT 5 cut(s) 245, 384, 396, 439, 802
MluNI TGGCCA 1 cut(s) 242
MlyI GAGTC 2 cut(s) 341, 853
Mox20I TGGCCA 1 cut(s) 242
MscI TGGCCA 1 cut(s) 242
MseI TTAA 7 cut(s) 285, 329, 399, 453, 461, 645, 922
Msp20I TGGCCA 1 cut(s) 242
MspI CCGG 2 cut(s) 843, 885
MspR9I CCNGG 2 cut(s) 130, 780
MunI CAATTG 1 cut(s) 802
MvaI CCWGG 2 cut(s) 130, 780
MwoI GCNNNNNNNGC 2 cut(s) 623, 885
NcoI CCATGG 1 cut(s) 871
NdeII GATC 1 cut(s) 898
NlaIII CATG 4 cut(s) 641, 760, 823, 875
NlaIV GGNNCC 1 cut(s) 817
NspI RCATGY 1 cut(s) 760
PciI ACATGT 1 cut(s) 756
PciSI GCTCTTC 1 cut(s) 477
PfeI GAWTC 3 cut(s) 217, 510, 732
PflMI CCANNNNNTGG 2 cut(s) 238, 357
PkrI GCNGC 4 cut(s) 93, 687, 841, 890
Ple19I CGATCG 1 cut(s) 901
PleI GAGTC 2 cut(s) 341, 853
PpsI GAGTC 2 cut(s) 341, 853
PscI ACATGT 1 cut(s) 756
Psp124BI GAGCTC 1 cut(s) 579
Psp6I CCWGG 2 cut(s) 128, 778
PspGI CCWGG 2 cut(s) 128, 778
PspN4I GGNNCC 1 cut(s) 817
PspPI GGNCC 2 cut(s) 816, 878
PvuI CGATCG 1 cut(s) 901
RsaI GTAC 2 cut(s) 309, 749
RsaNI GTAC 2 cut(s) 308, 748
SacI GAGCTC 1 cut(s) 579
SapI GCTCTTC 1 cut(s) 477
SaqAI TTAA 7 cut(s) 285, 329, 399, 453, 461, 645, 922
SatI GCNGC 4 cut(s) 92, 686, 840, 889
Sau3AI GATC 1 cut(s) 898
Sau96I GGNCC 2 cut(s) 816, 878
ScaI AGTACT 1 cut(s) 309
SchI GAGTC 2 cut(s) 341, 853
ScrFI CCNGG 2 cut(s) 130, 780
SduI GDGCHC 1 cut(s) 579
SetI ASST 6 cut(s) 84, 96, 168, 301, 579, 857
SfaNI GCATC 6 cut(s) 107, 237, 604, 672, 771, 784
SinI GGWCC 1 cut(s) 816
SmlI CTYRAG 2 cut(s) 102, 542
SmoI CTYRAG 2 cut(s) 102, 542
Sse9I AATT 5 cut(s) 245, 384, 396, 439, 802
SsiI CCGC 2 cut(s) 44, 54
SspMI CTAG 3 cut(s) 338, 500, 729
SstI GAGCTC 1 cut(s) 579
StyD4I CCNGG 2 cut(s) 128, 778
StyI CCWWGG 3 cut(s) 237, 705, 871
TaaI ACNGT 4 cut(s) 174, 449, 770, 826
TaqI TCGA 4 cut(s) 660, 828, 897, 901
TasI AATT 5 cut(s) 245, 384, 396, 439, 802
TatI WGTACW 1 cut(s) 307
TfiI GAWTC 3 cut(s) 217, 510, 732
Tru1I TTAA 7 cut(s) 285, 329, 399, 453, 461, 645, 922
Tru9I TTAA 7 cut(s) 285, 329, 399, 453, 461, 645, 922
TseI GCWGC 4 cut(s) 91, 685, 839, 888
TspDTI ATGAA 2 cut(s) 238, 669
Van91I CCANNNNNTGG 2 cut(s) 238, 357
VpaK11BI GGWCC 1 cut(s) 816
XagI CCTNNNNNAGG 1 cut(s) 529
XapI RAATTY 2 cut(s) 245, 384
XbaI TCTAGA 1 cut(s) 337
XceI RCATGY 1 cut(s) 760
XspI CTAG 3 cut(s) 338, 500, 729
ZrmI AGTACT 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.