Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0016796

Physical Location & Seq

Genomic Coordinates Reverse (-)

49277415 .. 49279388

Gene Structure 1974 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G030840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGACTTGGATCCACTTATCACTTCATAGTTCATACACGGATACACCCGTAACACCTTTTGAGCTCCGCAGACTTGAAGACCATAATCCAAGCTTTACTGCAACCATGGGAAGCATTCAGGGAGCAGAGAGGTACGCGGTGGTTACCGGTGCGAACAAGGGTATCGGGTTTGAGGTAGTCCGGCAACTAGCGTGCCGAGGCATTGTGGTGGTGTTGACGGCGAGAGATGAGAAAAGGGGAAGGGAAGCCACAGCCAAGCTCCATCATGATCATCATCTTCATGCCAATGTAGTCTTCCATCAGCTTGATGTGTTGGATCCACTTAGCGTCCAGTCTTTGGCAAATTTCATACATGACACCTTTGGCAGGCTTGATATCTTGGTTAATAACGCTGGAGCTAGTGGAGTTTTGGTTGTTGAGGAAGAACTCAAAGCCCTGAACATTGATCCCACCTCTTGGCTTTCAGGTCAAGCAGTCAACACAGTTCAAGGTGCTATAAAATCAACTTACGAAAAGGCTGAGGAATGCTTGAACACCAATTACTATGGTGTCAAAAGAGTGACAGAGGCTCTTCTTCCACTCTTGAAACTCTCTACTGCAGGAGCAAGAATTGTCAATGTCTCATCTCTCAGGAGTGAACTAAAGAGGATTCCAAGTGAAGAGATAAGGAATGAACTTGGAAATGTAAAAGCATTGACAGAGGAGAAAGTGGATGCAGTTCTGAGAAGATTCCTGCATGATTTCAAAGAAAATTCACTTGAAGCCAATGGATGGACAATGATGCTGCCTTCATATAGCATTTCAAAGGCATCCCTGAACGCCTACACAAGAATCCTTGTCAAGAAGTATCCCAAAATGTACATCAACTGTGTGCATCCTGGTTTTGTCAACACCGATCTCAACTGGCATACTGGGACAATGACTCTGCAAGAGGGGGCTGCAGGTCCTCTCAAGTTGGCTCTTCTACCAGATGGAGGACCTACAGGCTGCTATTTCGATCAAACTAAAGTAGCAGACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00902 ko01110 map00902 map01110

Pfam Domains

Protein Families

adh_short

Protein Analysis

340

Amino Acids

37.62

Weight (kDa)

6.67

Isoelectric Point (pI)

33.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	45 - 213	7e-24	short chain dehydrogenase
adh_short_C2	PF13561	50 - 160	6.3e-14	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016796)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g27110
malus_domestica	MD00G1032200.v1.1 MD11G1179400.v1.1
prunus_persica	Prupe.6G151900_v2.0.a1
pyrus_communis	pycom03g11580 pycom11g15490
rosa_chinensis	RchiOBHm_Chr5g0049671
rosa_laevigata	RLG00000034632
rosa_roxburghii	Rroxscaffold_1G00031560
rosa_rugosa	Rorug05G0250400
rosa_samantha	Rh5BG337500 Rh5CG362200 Rh5DG349700
rosa_wichuraiana	Rw5G030840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	932
AccB7I	CCANNNNNTGG	3 cut(s)	337, 456, 771
AccII	CGCG	1 cut(s)	137
AciI	CCGC	2 cut(s)	67, 137
AclWI	GGATC	5 cut(s)	4, 17, 311, 324, 440
AcsI	RAATTY	2 cut(s)	343, 751
AfaI	GTAC	2 cut(s)	134, 860
AfiI	CCNNNNNNNGG	5 cut(s)	337, 366, 456, 771, 974
AgeI	ACCGGT	1 cut(s)	146
AgsI	TTSAA	7 cut(s)	77, 488, 532, 586, 745, 761, 804
AjnI	CCWGG	1 cut(s)	877
AjuI	GAANNNNNNNTTGG	2 cut(s)	278, 310
AluBI	AGCT	5 cut(s)	64, 93, 259, 304, 398
AluI	AGCT	5 cut(s)	64, 93, 259, 304, 398
Alw21I	GWGCWC	1 cut(s)	66
Alw26I	GTCTC	1 cut(s)	625
AlwI	GGATC	5 cut(s)	4, 17, 311, 324, 440
ApeKI	GCWGC	3 cut(s)	784, 938, 987
ApoI	RAATTY	2 cut(s)	343, 751
AsiGI	ACCGGT	1 cut(s)	146
AspS9I	GGNCC	2 cut(s)	944, 977
AvaII	GGWCC	2 cut(s)	944, 977
BaeI	ACNNNNGTAYC	4 cut(s)	33, 66, 145, 178
BamHI	GGATCC	2 cut(s)	9, 316
BanII	GRGCYC	1 cut(s)	66
BbsI	GAAGAC	2 cut(s)	84, 286
Bbv12I	GWGCWC	1 cut(s)	66
BbvCI	CCTCAGC	1 cut(s)	519
BbvI	GCAGC	3 cut(s)	771, 925, 974
BccI	CCATC	4 cut(s)	270, 306, 765, 965
BceAI	ACGGC	1 cut(s)	234
BciT130I	CCWGG	1 cut(s)	879
BciVI	GTATCC	2 cut(s)	34, 858
BclI	TGATCA	1 cut(s)	268
BcoDI	GTCTC	1 cut(s)	625
BfaI	CTAG	2 cut(s)	188, 399
BfmI	CTRYAG	3 cut(s)	597, 939, 981
BfuAI	ACCTGC	1 cut(s)	932
BfuI	GTATCC	2 cut(s)	34, 858
BisI	GCNGC	3 cut(s)	785, 939, 988
BlsI	GCNGC	3 cut(s)	786, 940, 989
Bme1390I	CCNGG	1 cut(s)	879
Bme18I	GGWCC	2 cut(s)	944, 977
BmgT120I	GGNCC	2 cut(s)	944, 977
BmiI	GGNNCC	2 cut(s)	11, 318
BmrFI	CCNGG	1 cut(s)	879
BmrI	ACTGGG	1 cut(s)	921
BmsI	GCATC	4 cut(s)	703, 771, 818, 883
BmuI	ACTGGG	1 cut(s)	921
BpiI	GAAGAC	2 cut(s)	84, 286
BpmI	CTGGAG	1 cut(s)	414
Bpu10I	CCTNAGC	1 cut(s)	519
BpuEI	CTTGAG	1 cut(s)	935
BsaBI	GATNNNNATC	1 cut(s)	273
BsaJI	CCNNGG	2 cut(s)	105, 196
BsaWI	WCCGGW	1 cut(s)	146
BsaXI	ACNNNNNCTCC	2 cut(s)	396, 426
Bsc4I	CCNNNNNNNGG	5 cut(s)	337, 366, 456, 771, 974
Bse118I	RCCGGY	1 cut(s)	146
Bse1I	ACTGG	3 cut(s)	331, 908, 916
Bse8I	GATNNNNATC	1 cut(s)	273
BseBI	CCWGG	1 cut(s)	879
BseDI	CCNNGG	2 cut(s)	105, 196
BseGI	GGATG	4 cut(s)	718, 776, 809, 874
BseJI	GATNNNNATC	1 cut(s)	273
BseLI	CCNNNNNNNGG	5 cut(s)	337, 366, 456, 771, 974
BseMII	CTCAG	3 cut(s)	510, 643, 713
BseNI	ACTGG	3 cut(s)	331, 908, 916
BseRI	GAGGAG	1 cut(s)	716
BseXI	GCAGC	3 cut(s)	771, 925, 974
Bsh1236I	CGCG	1 cut(s)	137
BshTI	ACCGGT	1 cut(s)	146
BsiHKAI	GWGCWC	1 cut(s)	66
BsiSI	CCGG	2 cut(s)	147, 181
BslFI	GGGAC	1 cut(s)	928
BslI	CCNNNNNNNGG	5 cut(s)	337, 366, 456, 771, 974
BsmAI	GTCTC	1 cut(s)	625
BsmFI	GGGAC	1 cut(s)	928
BsmI	GAATGC	2 cut(s)	114, 530
Bsp1286I	GDGCHC	1 cut(s)	66
Bsp1407I	TGTACA	1 cut(s)	858
Bsp143I	GATC	6 cut(s)	9, 268, 316, 445, 895, 997
Bsp19I	CCATGG	1 cut(s)	105
BspACI	CCGC	2 cut(s)	67, 137
BspCNI	CTCAG	3 cut(s)	511, 642, 714
BspFNI	CGCG	1 cut(s)	137
BspHI	TCATGA	1 cut(s)	265
BspLI	GGNNCC	2 cut(s)	11, 318
BspMAI	CTGCAG	2 cut(s)	601, 943
BspMI	ACCTGC	1 cut(s)	932
BspPI	GGATC	5 cut(s)	4, 17, 311, 324, 440
BspQI	GCTCTTC	2 cut(s)	576, 966
BsrFI	RCCGGY	1 cut(s)	146
BsrGI	TGTACA	1 cut(s)	858
BsrI	ACTGG	3 cut(s)	331, 908, 916
BssAI	RCCGGY	1 cut(s)	146
BssECI	CCNNGG	2 cut(s)	105, 196
BssMI	GATC	6 cut(s)	9, 268, 316, 445, 895, 997
BssT1I	CCWWGG	1 cut(s)	105
Bst2UI	CCWGG	1 cut(s)	879
Bst4CI	ACNGT	2 cut(s)	484, 869
Bst6I	CTCTTC	3 cut(s)	576, 654, 966
BstAUI	TGTACA	1 cut(s)	858
BstC8I	GCNNGC	2 cut(s)	193, 368
BstDEI	CTNAG	4 cut(s)	323, 519, 629, 722
BstDSI	CCRYGG	1 cut(s)	105
BstEII	GGTNACC	1 cut(s)	142
BstENI	CCTNNNNNAGG	1 cut(s)	364
BstF5I	GGATG	4 cut(s)	718, 776, 809, 874
BstFNI	CGCG	1 cut(s)	137
BstKTI	GATC	6 cut(s)	12, 271, 319, 448, 898, 1000
BstMAI	GTCTC	1 cut(s)	625
BstMBI	GATC	6 cut(s)	9, 268, 316, 445, 895, 997
BstNI	CCWGG	1 cut(s)	879
BstPI	GGTNACC	1 cut(s)	142
BstSCI	CCNGG	1 cut(s)	877
BstSFI	CTRYAG	3 cut(s)	597, 939, 981
BstUI	CGCG	1 cut(s)	137
BstV1I	GCAGC	3 cut(s)	771, 925, 974
BstV2I	GAAGAC	2 cut(s)	84, 286
BstX2I	RGATCY	2 cut(s)	9, 316
BstYI	RGATCY	2 cut(s)	9, 316
BsuI	GTATCC	2 cut(s)	34, 858
BtgI	CCRYGG	1 cut(s)	105
BtsCI	GGATG	4 cut(s)	718, 776, 809, 874
BveI	ACCTGC	1 cut(s)	932
Cac8I	GCNNGC	2 cut(s)	193, 368
CciI	TCATGA	1 cut(s)	265
Cfr10I	RCCGGY	1 cut(s)	146
Cfr13I	GGNCC	2 cut(s)	944, 977
CseI	GACGC	1 cut(s)	316
Csp6I	GTAC	2 cut(s)	133, 859
CspAI	ACCGGT	1 cut(s)	146
CviAII	CATG	5 cut(s)	106, 266, 281, 353, 737
CviQI	GTAC	2 cut(s)	133, 859
DdeI	CTNAG	4 cut(s)	323, 519, 629, 722
DpnI	GATC	6 cut(s)	11, 270, 318, 447, 897, 999
DpnII	GATC	6 cut(s)	9, 268, 316, 445, 895, 997
Eam1104I	CTCTTC	3 cut(s)	576, 654, 966
EarI	CTCTTC	3 cut(s)	576, 654, 966
Ecl136II	GAGCTC	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	105
Eco24I	GRGCYC	1 cut(s)	66
Eco32I	GATATC	1 cut(s)	376
Eco47I	GGWCC	2 cut(s)	944, 977
Eco53kI	GAGCTC	1 cut(s)	64
Eco91I	GGTNACC	1 cut(s)	142
EcoICRI	GAGCTC	1 cut(s)	64
EcoNI	CCTNNNNNAGG	1 cut(s)	364
EcoO109I	RGGNCCY	2 cut(s)	944, 977
EcoO65I	GGTNACC	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	877
EcoRV	GATATC	1 cut(s)	376
EcoT14I	CCWWGG	1 cut(s)	105
EcoT38I	GRGCYC	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	5 cut(s)	109, 269, 284, 356, 740
FaqI	GGGAC	1 cut(s)	928
FatI	CATG	5 cut(s)	105, 265, 280, 352, 736
FbaI	TGATCA	1 cut(s)	268
Fnu4HI	GCNGC	3 cut(s)	785, 939, 988
FokI	GGATG	4 cut(s)	725, 783, 796, 861
FriOI	GRGCYC	1 cut(s)	66
Fsp4HI	GCNGC	3 cut(s)	785, 939, 988
FspBI	CTAG	2 cut(s)	188, 399
GluI	GCNGC	3 cut(s)	785, 939, 988
GsuI	CTGGAG	1 cut(s)	414
HapII	CCGG	2 cut(s)	147, 181
HgaI	GACGC	1 cut(s)	316
Hin1II	CATG	5 cut(s)	109, 269, 284, 356, 740
HincII	GTYRAC	3 cut(s)	216, 478, 889
HindII	GTYRAC	3 cut(s)	216, 478, 889
HindIII	AAGCTT	1 cut(s)	91
HinfI	GANTC	4 cut(s)	649, 729, 831, 922
HpaII	CCGG	2 cut(s)	147, 181
Hpy166II	GTNNAC	4 cut(s)	216, 478, 638, 889
Hpy188I	TCNGA	2 cut(s)	723, 1022
Hpy188III	TCNNGA	4 cut(s)	266, 583, 631, 841
Hpy8I	GTNNAC	4 cut(s)	216, 478, 638, 889
HpyAV	CCTTC	2 cut(s)	234, 798
HpyCH4III	ACNGT	2 cut(s)	484, 869
HpyCH4V	TGCA	7 cut(s)	101, 599, 716, 736, 874, 928, 941
HpyF3I	CTNAG	4 cut(s)	323, 519, 629, 722
Hsp92II	CATG	5 cut(s)	109, 269, 284, 356, 740
Ksp22I	TGATCA	1 cut(s)	268
Kzo9I	GATC	6 cut(s)	9, 268, 316, 445, 895, 997
LguI	GCTCTTC	2 cut(s)	576, 966
LmnI	GCTCC	5 cut(s)	69, 122, 264, 395, 602
Lsp1109I	GCAGC	3 cut(s)	771, 925, 974
LweI	GCATC	4 cut(s)	703, 771, 818, 883
MaeI	CTAG	2 cut(s)	188, 399
MaeIII	GTNAC	3 cut(s)	49, 142, 559
MalI	GATC	6 cut(s)	11, 270, 318, 447, 897, 999
MboI	GATC	6 cut(s)	9, 268, 316, 445, 895, 997
MboII	GAAGA	9 cut(s)	89, 269, 286, 434, 563, 566, 671, 738, 953
MflI	RGATCY	2 cut(s)	9, 316
MhlI	GDGCHC	1 cut(s)	66
MluCI	AATT	4 cut(s)	343, 538, 609, 751
MlyI	GAGTC	1 cut(s)	916
MmeI	TCCRAC	1 cut(s)	294
MseI	TTAA	1 cut(s)	384
MslI	CAYNNNNRTG	3 cut(s)	206, 279, 285
MspI	CCGG	2 cut(s)	147, 181
MspR9I	CCNGG	1 cut(s)	879
Mva1269I	GAATGC	2 cut(s)	114, 530
MvaI	CCWGG	1 cut(s)	879
MvnI	CGCG	1 cut(s)	137
NcoI	CCATGG	1 cut(s)	105
NdeII	GATC	6 cut(s)	9, 268, 316, 445, 895, 997
NlaIII	CATG	5 cut(s)	109, 269, 284, 356, 740
NlaIV	GGNNCC	2 cut(s)	11, 318
NmeAIII	GCCGAG	1 cut(s)	221
NmuCI	GTSAC	1 cut(s)	559
PagI	TCATGA	1 cut(s)	265
PciSI	GCTCTTC	2 cut(s)	576, 966
PctI	GAATGC	2 cut(s)	114, 530
PfeI	GAWTC	3 cut(s)	649, 729, 831
PflMI	CCANNNNNTGG	3 cut(s)	337, 456, 771
PinAI	ACCGGT	1 cut(s)	146
PkrI	GCNGC	3 cut(s)	786, 940, 989
PleI	GAGTC	1 cut(s)	916
PpsI	GAGTC	1 cut(s)	916
PpuMI	RGGWCCY	2 cut(s)	944, 977
Psp124BI	GAGCTC	1 cut(s)	66
Psp5II	RGGWCCY	2 cut(s)	944, 977
Psp6I	CCWGG	1 cut(s)	877
PspEI	GGTNACC	1 cut(s)	142
PspGI	CCWGG	1 cut(s)	877
PspN4I	GGNNCC	2 cut(s)	11, 318
PspPI	GGNCC	2 cut(s)	944, 977
PspPPI	RGGWCCY	2 cut(s)	944, 977
PsrI	GAACNNNNNNTAC	2 cut(s)	524, 556
PstI	CTGCAG	2 cut(s)	601, 943
PsuI	RGATCY	2 cut(s)	9, 316
RsaI	GTAC	2 cut(s)	134, 860
RsaNI	GTAC	2 cut(s)	133, 859
RseI	CAYNNNNRTG	3 cut(s)	206, 279, 285
SacI	GAGCTC	1 cut(s)	66
SapI	GCTCTTC	2 cut(s)	576, 966
SaqAI	TTAA	1 cut(s)	384
SatI	GCNGC	3 cut(s)	785, 939, 988
Sau3AI	GATC	6 cut(s)	9, 268, 316, 445, 895, 997
Sau96I	GGNCC	2 cut(s)	944, 977
SchI	GAGTC	1 cut(s)	916
ScrFI	CCNGG	1 cut(s)	879
SduI	GDGCHC	1 cut(s)	66
SfaNI	GCATC	4 cut(s)	703, 771, 818, 883
SfcI	CTRYAG	3 cut(s)	597, 939, 981
SinI	GGWCC	2 cut(s)	944, 977
SmiMI	CAYNNNNRTG	3 cut(s)	206, 279, 285
SmlI	CTYRAG	1 cut(s)	950
SmoI	CTYRAG	1 cut(s)	950
Sse9I	AATT	4 cut(s)	343, 538, 609, 751
SsiI	CCGC	2 cut(s)	67, 137
SspMI	CTAG	2 cut(s)	188, 399
SstI	GAGCTC	1 cut(s)	66
StyD4I	CCNGG	1 cut(s)	877
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	2 cut(s)	484, 869
TaqI	TCGA	1 cut(s)	996
TasI	AATT	4 cut(s)	343, 538, 609, 751
TatI	WGTACW	1 cut(s)	858
TfiI	GAWTC	3 cut(s)	649, 729, 831
Tru1I	TTAA	1 cut(s)	384
Tru9I	TTAA	1 cut(s)	384
TseFI	GTSAC	1 cut(s)	559
TseI	GCWGC	3 cut(s)	784, 938, 987
Tsp45I	GTSAC	1 cut(s)	559
TspDTI	ATGAA	6 cut(s)	14, 21, 269, 337, 687, 780
TspGWI	ACGGA	1 cut(s)	53
Van91I	CCANNNNNTGG	3 cut(s)	337, 456, 771
VpaK11BI	GGWCC	2 cut(s)	944, 977
XagI	CCTNNNNNAGG	1 cut(s)	364
XapI	RAATTY	2 cut(s)	343, 751
XspI	CTAG	2 cut(s)	188, 399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.