MD11G1179400.v1.1

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0016796
Physical Location & Seq
Reverse (-)
21620980 .. 21623413
2434 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1179400.v1.1.491

Sequence Viewer

Length: 1011 bp
ATGGGAACCAATCAAGAATATGGAGCAGAGACAGAGAGATGTGCAGTGGTTAGCGGTGCAAACAAGGGTATTGGATTTGAGGTGGTGAGGCAGCTTGCATCTCAAGGGGTGGTGGTGGTGTTGACAGCCAGGGATGAGAAGAGGGGAAAAGAAGCAACATCTAAGCTCCAACAGTTGGGTCTGTCAAATGTTGTCTTCCATCAACTTGATGTCTTGAATCCAGTTAGCATCCACTCCTTGGCCAAATTCATACACGCCAAATTTGGCAGGCTTGATATCTTGGTTAATAATGCTGGAGCTACTGGAGTACTGGTGTCTGAGAAAGATTTAAAATCTCTAGACATTGACTCCACAACTTGGGTCTTCTCACAAATATACTATATATATGTCGCCACACCACAACCAAGATTCGCAGCAGCTTTTAACTACAAGAAGTTGTTTGTTCAGCTTTCAGGCAAAGCAGTCAACCAAATTCAATGTGCAATTAAATACACTTATGAGAAGGCTGAGGAATGTTTGAATACAAATTACTACGGTGTTAAAAGATTAACCGAGGCTCTTCTCCCACTCTTGCAACTCTCCACTCTGGGAGCAAGAATCGTCAATGTCTCCTCCCTAAGGAGTGAACTCAAGAGGATACCAAGTGAAGAGATAAGAAATGAGCTCGGGGATGTAGAAACATTGACAGAGGAGAAAGTGGATGCAGTTTTGGCAAGATTTCTGCATGATTTTAAACAAAACGAACTCGAAGCGAATGGATGGACAATGATGCTGCCTGCATATAGCATTTCCAAGGCCACCCTCAATGCTTACACTAGAATCCTTGCCAACAAGTACCCAAACATGTGCATCAACTGTGTGCATCCTGGCTTTGTCAATACAGACCTCAATTGGCATACAGGGACCATGACTGTCGAAGAAGGGGCTGCCGGTCTGGTCAGGTTGGCTCTTATACCCCATAGAGGCCCTTCCGGCTGCTATTTCGATCGAACTGAAGTCGCAGACTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

337

Amino Acids

37.29

Weight (kDa)

7.04

Isoelectric Point (pI)

28.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 14 - 105 2.4e-19 short chain dehydrogenase
KR PF08659 16 - 101 8.3e-06 KR domain
adh_short_C2 PF13561 19 - 106 4e-15 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016796)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g27110
malus_domestica MD00G1032200.v1.1 MD11G1179400.v1.1
prunus_persica Prupe.6G151900_v2.0.a1
pyrus_communis pycom03g11580 pycom11g15490
rosa_chinensis RchiOBHm_Chr5g0049671
rosa_laevigata RLG00000034632
rosa_roxburghii Rroxscaffold_1G00031560
rosa_rugosa Rorug05G0250400
rosa_samantha Rh5BG337500 Rh5CG362200 Rh5DG349700
rosa_wichuraiana Rw5G030840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 175, 238, 357
AciI CCGC 1 cut(s) 54
AcoI YGGCCR 1 cut(s) 240
AcsI RAATTY 3 cut(s) 245, 260, 471
AfaI GTAC 2 cut(s) 309, 836
AfiI CCNNNNNNNGG 5 cut(s) 175, 238, 357, 618, 962
AflIII ACRYGT 1 cut(s) 843
AgsI TTSAA 3 cut(s) 217, 476, 520
AjnI CCWGG 2 cut(s) 128, 865
AluBI AGCT 6 cut(s) 94, 166, 299, 419, 448, 664
AluI AGCT 6 cut(s) 94, 166, 299, 419, 448, 664
Alw21I GWGCWC 1 cut(s) 666
Alw26I GTCTC 2 cut(s) 23, 613
Ama87I CYCGRG 1 cut(s) 665
AoxI GGCC 3 cut(s) 240, 795, 964
ApeKI GCWGC 6 cut(s) 91, 413, 416, 772, 926, 975
ApoI RAATTY 3 cut(s) 245, 260, 471
AspS9I GGNCC 2 cut(s) 903, 965
AsuHPI GGTGA 1 cut(s) 97
AvaI CYCGRG 1 cut(s) 665
AvaII GGWCC 1 cut(s) 903
AxyI CCTNAGG 1 cut(s) 617
BalI TGGCCA 1 cut(s) 242
BanII GRGCYC 1 cut(s) 666
BbsI GAAGAC 2 cut(s) 187, 355
Bbv12I GWGCWC 1 cut(s) 666
BbvCI CCTCAGC 1 cut(s) 507
BbvI GCAGC 6 cut(s) 103, 425, 428, 759, 913, 962
BccI CCATC 2 cut(s) 207, 753
BciT130I CCWGG 2 cut(s) 130, 867
BciVI GTATCC 1 cut(s) 630
BcoDI GTCTC 2 cut(s) 23, 613
BfaI CTAG 2 cut(s) 338, 816
BfuI GTATCC 1 cut(s) 630
BglI GCCNNNNNGGC 1 cut(s) 972
BisI GCNGC 6 cut(s) 92, 414, 417, 773, 927, 976
BlsI GCNGC 6 cut(s) 93, 415, 418, 774, 928, 977
BmcAI AGTACT 1 cut(s) 309
Bme1390I CCNGG 2 cut(s) 130, 867
Bme18I GGWCC 1 cut(s) 903
BmeT110I CYCGRG 1 cut(s) 665
BmgT120I GGNCC 2 cut(s) 903, 965
BmiI GGNNCC 2 cut(s) 7, 904
BmrFI CCNGG 2 cut(s) 130, 867
BmsI GCATC 6 cut(s) 107, 237, 691, 759, 858, 871
BpiI GAAGAC 2 cut(s) 187, 355
BpmI CTGGAG 2 cut(s) 315, 324
Bpu10I CCTNAGC 1 cut(s) 507
BpuEI CTTGAG 2 cut(s) 87, 614
BsaJI CCNNGG 4 cut(s) 129, 237, 552, 792
BsaXI ACNNNNNCTCC 4 cut(s) 297, 327, 332, 362
Bsc4I CCNNNNNNNGG 5 cut(s) 175, 238, 357, 618, 962
Bse118I RCCGGY 1 cut(s) 929
Bse1I ACTGG 3 cut(s) 221, 307, 315
Bse21I CCTNAGG 1 cut(s) 617
BseBI CCWGG 2 cut(s) 130, 867
BseDI CCNNGG 4 cut(s) 129, 237, 552, 792
BseGI GGATG 6 cut(s) 139, 228, 676, 706, 764, 862
BseLI CCNNNNNNNGG 5 cut(s) 175, 238, 357, 618, 962
BseMII CTCAG 2 cut(s) 309, 498
BseNI ACTGG 3 cut(s) 221, 307, 315
BseRI GAGGAG 2 cut(s) 601, 704
BseXI GCAGC 6 cut(s) 103, 425, 428, 759, 913, 962
BsgI GTGCAG 1 cut(s) 63
Bsh1285I CGRYCG 1 cut(s) 988
BshFI GGCC 3 cut(s) 242, 797, 966
BsiEI CGRYCG 1 cut(s) 988
BsiHKAI GWGCWC 1 cut(s) 666
BsiHKCI CYCGRG 1 cut(s) 665
BsiSI CCGG 2 cut(s) 930, 972
BslFI GGGAC 1 cut(s) 916
BslI CCNNNNNNNGG 5 cut(s) 175, 238, 357, 618, 962
BsmAI GTCTC 2 cut(s) 23, 613
BsmFI GGGAC 1 cut(s) 916
BsnI GGCC 3 cut(s) 242, 797, 966
BsoBI CYCGRG 1 cut(s) 665
Bsp1286I GDGCHC 1 cut(s) 666
Bsp143I GATC 1 cut(s) 985
BspACI CCGC 1 cut(s) 54
BspANI GGCC 3 cut(s) 242, 797, 966
BspCNI CTCAG 2 cut(s) 310, 499
BspLI GGNNCC 2 cut(s) 7, 904
BspQI GCTCTTC 1 cut(s) 564
BsrFI RCCGGY 1 cut(s) 929
BsrI ACTGG 3 cut(s) 221, 307, 315
BssAI RCCGGY 1 cut(s) 929
BssECI CCNNGG 4 cut(s) 129, 237, 552, 792
BssMI GATC 1 cut(s) 985
BssT1I CCWWGG 2 cut(s) 237, 792
Bst2UI CCWGG 2 cut(s) 130, 867
Bst4CI ACNGT 4 cut(s) 174, 536, 857, 913
Bst6I CTCTTC 3 cut(s) 134, 564, 642
BstC8I GCNNGC 3 cut(s) 96, 269, 777
BstDEI CTNAG 4 cut(s) 162, 318, 507, 617
BstENI CCTNNNNNAGG 1 cut(s) 616
BstF5I GGATG 6 cut(s) 139, 228, 676, 706, 764, 862
BstKTI GATC 1 cut(s) 988
BstMAI GTCTC 2 cut(s) 23, 613
BstMBI GATC 1 cut(s) 985
BstMCI CGRYCG 1 cut(s) 988
BstMWI GCNNNNNNNGC 2 cut(s) 710, 972
BstNI CCWGG 2 cut(s) 130, 867
BstNSI RCATGY 1 cut(s) 847
BstSCI CCNGG 2 cut(s) 128, 865
BstV1I GCAGC 6 cut(s) 103, 425, 428, 759, 913, 962
BstV2I GAAGAC 2 cut(s) 187, 355
Bsu36I CCTNAGG 1 cut(s) 617
BsuI GTATCC 1 cut(s) 630
BsuRI GGCC 3 cut(s) 242, 797, 966
BtsCI GGATG 6 cut(s) 139, 228, 676, 706, 764, 862
BtsI GCAGTG 1 cut(s) 51
BtsIMutI CAGTG 1 cut(s) 51
Cac8I GCNNGC 3 cut(s) 96, 269, 777
Cfr10I RCCGGY 1 cut(s) 929
Cfr13I GGNCC 2 cut(s) 903, 965
Csp6I GTAC 2 cut(s) 308, 835
CviAII CATG 3 cut(s) 725, 844, 907
CviQI GTAC 2 cut(s) 308, 835
DdeI CTNAG 4 cut(s) 162, 318, 507, 617
DpnI GATC 1 cut(s) 987
DpnII GATC 1 cut(s) 985
DraI TTTAAA 2 cut(s) 330, 733
EaeI YGGCCR 1 cut(s) 240
Eam1104I CTCTTC 3 cut(s) 134, 564, 642
EarI CTCTTC 3 cut(s) 134, 564, 642
Ecl136II GAGCTC 1 cut(s) 664
Eco130I CCWWGG 2 cut(s) 237, 792
Eco24I GRGCYC 1 cut(s) 666
Eco32I GATATC 1 cut(s) 277
Eco47I GGWCC 1 cut(s) 903
Eco53kI GAGCTC 1 cut(s) 664
Eco81I CCTNAGG 1 cut(s) 617
Eco88I CYCGRG 1 cut(s) 665
EcoICRI GAGCTC 1 cut(s) 664
EcoNI CCTNNNNNAGG 1 cut(s) 616
EcoO109I RGGNCCY 1 cut(s) 965
EcoRII CCWGG 2 cut(s) 128, 865
EcoRV GATATC 1 cut(s) 277
EcoT14I CCWWGG 2 cut(s) 237, 792
EcoT38I GRGCYC 1 cut(s) 666
ErhI CCWWGG 2 cut(s) 237, 792
FaeI CATG 3 cut(s) 728, 847, 910
FaqI GGGAC 1 cut(s) 916
FatI CATG 3 cut(s) 724, 843, 906
Fnu4HI GCNGC 6 cut(s) 92, 414, 417, 773, 927, 976
FokI GGATG 6 cut(s) 146, 215, 683, 713, 771, 849
FriOI GRGCYC 1 cut(s) 666
Fsp4HI GCNGC 6 cut(s) 92, 414, 417, 773, 927, 976
FspBI CTAG 2 cut(s) 338, 816
GluI GCNGC 6 cut(s) 92, 414, 417, 773, 927, 976
GsuI CTGGAG 2 cut(s) 315, 324
HaeIII GGCC 3 cut(s) 242, 797, 966
HapII CCGG 2 cut(s) 930, 972
Hin1II CATG 3 cut(s) 728, 847, 910
HincII GTYRAC 2 cut(s) 123, 466
HindII GTYRAC 2 cut(s) 123, 466
HinfI GANTC 5 cut(s) 217, 347, 408, 597, 819
HpaII CCGG 2 cut(s) 930, 972
HphI GGTGA 1 cut(s) 97
Hpy166II GTNNAC 3 cut(s) 123, 466, 626
Hpy188I TCNGA 1 cut(s) 319
Hpy188III TCNNGA 4 cut(s) 14, 214, 338, 631
Hpy8I GTNNAC 3 cut(s) 123, 466, 626
HpyAV CCTTC 3 cut(s) 496, 914, 978
HpyCH4III ACNGT 4 cut(s) 174, 536, 857, 913
HpyF10VI GCNNNNNNNGC 2 cut(s) 710, 972
HpyF3I CTNAG 4 cut(s) 162, 318, 507, 617
Hsp92II CATG 3 cut(s) 728, 847, 910
Kzo9I GATC 1 cut(s) 985
LguI GCTCTTC 1 cut(s) 564
LmnI GCTCC 4 cut(s) 23, 171, 296, 590
Lsp1109I GCAGC 6 cut(s) 103, 425, 428, 759, 913, 962
LweI GCATC 6 cut(s) 107, 237, 691, 759, 858, 871
MaeI CTAG 2 cut(s) 338, 816
MalI GATC 1 cut(s) 987
MboI GATC 1 cut(s) 985
MboII GAAGA 6 cut(s) 151, 187, 355, 551, 659, 929
MfeI CAATTG 1 cut(s) 889
MhlI GDGCHC 1 cut(s) 666
MlsI TGGCCA 1 cut(s) 242
MluCI AATT 6 cut(s) 245, 260, 471, 483, 526, 889
MluNI TGGCCA 1 cut(s) 242
MlyI GAGTC 1 cut(s) 341
MmeI TCCRAC 1 cut(s) 193
Mox20I TGGCCA 1 cut(s) 242
MscI TGGCCA 1 cut(s) 242
MseI TTAA 8 cut(s) 285, 329, 423, 486, 540, 548, 732, 1009
Msp20I TGGCCA 1 cut(s) 242
MspI CCGG 2 cut(s) 930, 972
MspR9I CCNGG 2 cut(s) 130, 867
MunI CAATTG 1 cut(s) 889
MvaI CCWGG 2 cut(s) 130, 867
MwoI GCNNNNNNNGC 2 cut(s) 710, 972
NdeII GATC 1 cut(s) 985
NlaIII CATG 3 cut(s) 728, 847, 910
NlaIV GGNNCC 2 cut(s) 7, 904
NspI RCATGY 1 cut(s) 847
PciI ACATGT 1 cut(s) 843
PciSI GCTCTTC 1 cut(s) 564
PfeI GAWTC 4 cut(s) 217, 408, 597, 819
PflMI CCANNNNNTGG 3 cut(s) 175, 238, 357
PkrI GCNGC 6 cut(s) 93, 415, 418, 774, 928, 977
Ple19I CGATCG 1 cut(s) 988
PleI GAGTC 1 cut(s) 341
PpsI GAGTC 1 cut(s) 341
PscI ACATGT 1 cut(s) 843
Psp124BI GAGCTC 1 cut(s) 666
Psp6I CCWGG 2 cut(s) 128, 865
PspGI CCWGG 2 cut(s) 128, 865
PspN4I GGNNCC 2 cut(s) 7, 904
PspPI GGNCC 2 cut(s) 903, 965
PvuI CGATCG 1 cut(s) 988
RsaI GTAC 2 cut(s) 309, 836
RsaNI GTAC 2 cut(s) 308, 835
SacI GAGCTC 1 cut(s) 666
SapI GCTCTTC 1 cut(s) 564
SaqAI TTAA 8 cut(s) 285, 329, 423, 486, 540, 548, 732, 1009
SatI GCNGC 6 cut(s) 92, 414, 417, 773, 927, 976
Sau3AI GATC 1 cut(s) 985
Sau96I GGNCC 2 cut(s) 903, 965
ScaI AGTACT 1 cut(s) 309
SchI GAGTC 1 cut(s) 341
ScrFI CCNGG 2 cut(s) 130, 867
SduI GDGCHC 1 cut(s) 666
SetI ASST 9 cut(s) 84, 96, 168, 301, 421, 450, 666, 888, 944
SfaNI GCATC 6 cut(s) 107, 237, 691, 759, 858, 871
SinI GGWCC 1 cut(s) 903
SmlI CTYRAG 2 cut(s) 102, 629
SmoI CTYRAG 2 cut(s) 102, 629
Sse9I AATT 6 cut(s) 245, 260, 471, 483, 526, 889
SsiI CCGC 1 cut(s) 54
SspMI CTAG 2 cut(s) 338, 816
SstI GAGCTC 1 cut(s) 666
StyD4I CCNGG 2 cut(s) 128, 865
StyI CCWWGG 2 cut(s) 237, 792
TaaI ACNGT 4 cut(s) 174, 536, 857, 913
TaqI TCGA 4 cut(s) 747, 915, 984, 988
TasI AATT 6 cut(s) 245, 260, 471, 483, 526, 889
TatI WGTACW 1 cut(s) 307
TfiI GAWTC 4 cut(s) 217, 408, 597, 819
Tru1I TTAA 8 cut(s) 285, 329, 423, 486, 540, 548, 732, 1009
Tru9I TTAA 8 cut(s) 285, 329, 423, 486, 540, 548, 732, 1009
TscAI CASTG 1 cut(s) 51
TseI GCWGC 6 cut(s) 91, 413, 416, 772, 926, 975
TspDTI ATGAA 1 cut(s) 238
TspRI CASTG 1 cut(s) 51
Van91I CCANNNNNTGG 3 cut(s) 175, 238, 357
VpaK11BI GGWCC 1 cut(s) 903
XagI CCTNNNNNAGG 1 cut(s) 616
XapI RAATTY 3 cut(s) 245, 260, 471
XbaI TCTAGA 1 cut(s) 337
XceI RCATGY 1 cut(s) 847
XspI CTAG 2 cut(s) 338, 816
ZrmI AGTACT 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.