Prupe.6G151900_v2.0.a1

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0016796
Physical Location & Seq
Reverse (-)
13170357 .. 13174303
3947 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G151900.1

Sequence Viewer

Length: 981 bp
ATGGGGCCTGAAAGAAAACAAGATCATCAGAAAGCAGCACATCCAAGCATTATTGCAACAATGGGAAGCAATGAAGGATATGGAGCAGAGAGGTATGCGGTGGTATCGGGAGCAAACAAGGGAATTGGATATGAGGTGGTGCGGCAACTTGCTGCATGTCAAGGGGTGGTGGTGGTTTTAACGGCTAGAGATGAGAAAAGGGGAAGAGATGCCACGTCACAGCTCCATCACTTGGGTTTCTCAAATGTGCTCTTCCATCAGCTTGATGTTTTGGACCCTTTTAGCATCCAGTCTTTGGCCAACTTCATAGACAACAGATTTGGCAGGCTTGATATCCTGGTTAATAATGCTGGAGCCAGTGGAGCAGTGGTTGATGAGGAAGCTTTAAAATCCCTAAACATTGATCCCACAACTTGGCTTTCAGGCAAAGCGGTCAACAAAATTCAATGTGCAATAAAATTCACTTATGAGAAGGCTGAAGAATGCTTGAACACAAATTACTATGGTGCTAAAAGACTAACTGAGGCTCTTCTCCCACTCTTGAAGCTGTCCCCTCAGGGAGGAAGGATTGTGAATGTCTCCTCTCTAAGGAGTGAACTTAAGAGGATACCAAGTGAAGAAATAAGAAATGAGCTTGGGGATGTGGAAACCTTGACAGAGGAGAAAGTAGATGCACTTTTGACAAAGTTTCTGGTTGATTTTAAACAAAATACACTTGAAGCCAATGGATGGACACTGATGCTGCCTGCATACAGCATTTCCAAGGTCACCCTCAATGCCTACACAAGAATCCTTGCCAAAAAGTATCCAAAGATGTATATCAACTGTGTGCATCCAGGCTTTGTCAATACAGATATCAATTGGCATACAGGAACAATGACTGTGGAAGAAGGGGCTGCAGGTCCAGTCAAGTTGGCTCTTCTACCAAATGGAGGCCCTACAGGCTGCTATTTTGATCAAACTGAAGTTGCAGACTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short

Protein Analysis

327

Amino Acids

35.79

Weight (kDa)

6.2

Isoelectric Point (pI)

32.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016796)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g27110
malus_domestica MD00G1032200.v1.1 MD11G1179400.v1.1
prunus_persica Prupe.6G151900_v2.0.a1
pyrus_communis pycom03g11580 pycom11g15490
rosa_chinensis RchiOBHm_Chr5g0049671
rosa_laevigata RLG00000034632
rosa_roxburghii Rroxscaffold_1G00031560
rosa_rugosa Rorug05G0250400
rosa_samantha Rh5BG337500 Rh5CG362200 Rh5DG349700
rosa_wichuraiana Rw5G030840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 890
AccB7I CCANNNNNTGG 4 cut(s) 232, 295, 414, 729
AciI CCGC 3 cut(s) 98, 142, 431
AclWI GGATC 1 cut(s) 398
AcoI YGGCCR 1 cut(s) 297
AcsI RAATTY 2 cut(s) 441, 458
AcuI CTGAAG 1 cut(s) 498
AfiI CCNNNNNNNGG 7 cut(s) 232, 295, 414, 560, 588, 729, 932
AflII CTTAAG 1 cut(s) 599
AgsI TTSAA 4 cut(s) 446, 490, 544, 719
AjiI CACGTC 1 cut(s) 216
AjnI CCWGG 2 cut(s) 336, 835
AluBI AGCT 5 cut(s) 223, 262, 383, 547, 634
AluI AGCT 5 cut(s) 223, 262, 383, 547, 634
Alw21I GWGCWC 1 cut(s) 252
Alw26I GTCTC 1 cut(s) 583
AlwI GGATC 1 cut(s) 398
AoxI GGCC 3 cut(s) 5, 297, 934
ApeKI GCWGC 5 cut(s) 35, 152, 742, 896, 945
ApoI RAATTY 2 cut(s) 441, 458
ArsI GACNNNNNNTTYG 2 cut(s) 302, 334
AspS9I GGNCC 4 cut(s) 5, 274, 902, 935
AsuHPI GGTGA 1 cut(s) 760
AvaII GGWCC 2 cut(s) 274, 902
AxyI CCTNAGG 1 cut(s) 555
BalI TGGCCA 1 cut(s) 299
Bbv12I GWGCWC 1 cut(s) 252
BbvI GCAGC 5 cut(s) 47, 139, 729, 883, 932
BccI CCATC 3 cut(s) 234, 264, 723
BceAI ACGGC 1 cut(s) 198
BciT130I CCWGG 2 cut(s) 338, 837
BciVI GTATCC 2 cut(s) 600, 816
BclI TGATCA 1 cut(s) 955
BcoDI GTCTC 1 cut(s) 583
BfaI CTAG 2 cut(s) 186, 979
BfmI CTRYAG 2 cut(s) 897, 939
BfrI CTTAAG 1 cut(s) 599
BfuAI ACCTGC 1 cut(s) 890
BfuI GTATCC 2 cut(s) 600, 816
BglI GCCNNNNNGGC 1 cut(s) 942
BisI GCNGC 6 cut(s) 36, 143, 153, 743, 897, 946
BlsI GCNGC 6 cut(s) 37, 144, 154, 744, 898, 947
Bme1390I CCNGG 2 cut(s) 338, 837
Bme18I GGWCC 2 cut(s) 274, 902
BmgBI CACGTC 1 cut(s) 216
BmgT120I GGNCC 4 cut(s) 5, 274, 902, 935
BmiI GGNNCC 3 cut(s) 6, 276, 355
BmrFI CCNGG 2 cut(s) 338, 837
BmsI GCATC 5 cut(s) 199, 294, 661, 729, 841
BpmI CTGGAG 1 cut(s) 372
BsaBI GATNNNNATC 1 cut(s) 818
BsaJI CCNNGG 1 cut(s) 762
BsaXI ACNNNNNCTCC 2 cut(s) 354, 384
Bsc4I CCNNNNNNNGG 7 cut(s) 232, 295, 414, 560, 588, 729, 932
Bse1I ACTGG 3 cut(s) 289, 357, 905
Bse21I CCTNAGG 1 cut(s) 555
Bse3DI GCAATG 1 cut(s) 76
Bse8I GATNNNNATC 1 cut(s) 818
BseBI CCWGG 2 cut(s) 338, 837
BseDI CCNNGG 1 cut(s) 762
BseGI GGATG 5 cut(s) 40, 285, 646, 734, 832
BseJI GATNNNNATC 1 cut(s) 818
BseLI CCNNNNNNNGG 7 cut(s) 232, 295, 414, 560, 588, 729, 932
BseMI GCAATG 1 cut(s) 76
BseMII CTCAG 2 cut(s) 513, 569
BseNI ACTGG 3 cut(s) 289, 357, 905
BseRI GAGGAG 2 cut(s) 571, 674
BseXI GCAGC 5 cut(s) 47, 139, 729, 883, 932
BshFI GGCC 3 cut(s) 7, 299, 936
BsiHKAI GWGCWC 1 cut(s) 252
BslFI GGGAC 1 cut(s) 535
BslI CCNNNNNNNGG 7 cut(s) 232, 295, 414, 560, 588, 729, 932
BsmAI GTCTC 1 cut(s) 583
BsmFI GGGAC 1 cut(s) 535
BsmI GAATGC 1 cut(s) 488
BsnI GGCC 3 cut(s) 7, 299, 936
Bsp1286I GDGCHC 1 cut(s) 252
Bsp143I GATC 3 cut(s) 22, 403, 955
BspACI CCGC 3 cut(s) 98, 142, 431
BspANI GGCC 3 cut(s) 7, 299, 936
BspCNI CTCAG 2 cut(s) 514, 568
BspLI GGNNCC 3 cut(s) 6, 276, 355
BspMAI CTGCAG 1 cut(s) 901
BspMI ACCTGC 1 cut(s) 890
BspPI GGATC 1 cut(s) 398
BspQI GCTCTTC 3 cut(s) 257, 534, 924
BspTI CTTAAG 1 cut(s) 599
BsrDI GCAATG 1 cut(s) 76
BsrI ACTGG 3 cut(s) 289, 357, 905
BssECI CCNNGG 1 cut(s) 762
BssMI GATC 3 cut(s) 22, 403, 955
BssT1I CCWWGG 1 cut(s) 762
Bst2UI CCWGG 2 cut(s) 338, 837
Bst4CI ACNGT 2 cut(s) 827, 883
Bst6I CTCTTC 4 cut(s) 199, 257, 534, 924
BstAFI CTTAAG 1 cut(s) 599
BstC8I GCNNGC 2 cut(s) 326, 747
BstDEI CTNAG 3 cut(s) 522, 555, 587
BstEII GGTNACC 1 cut(s) 766
BstENI CCTNNNNNAGG 2 cut(s) 558, 586
BstF5I GGATG 5 cut(s) 40, 285, 646, 734, 832
BstKTI GATC 3 cut(s) 25, 406, 958
BstMAI GTCTC 1 cut(s) 583
BstMBI GATC 3 cut(s) 22, 403, 955
BstMWI GCNNNNNNNGC 2 cut(s) 362, 942
BstNI CCWGG 2 cut(s) 338, 837
BstNSI RCATGY 1 cut(s) 159
BstPI GGTNACC 1 cut(s) 766
BstSCI CCNGG 2 cut(s) 336, 835
BstSFI CTRYAG 2 cut(s) 897, 939
BstV1I GCAGC 5 cut(s) 47, 139, 729, 883, 932
Bsu36I CCTNAGG 1 cut(s) 555
BsuI GTATCC 2 cut(s) 600, 816
BsuRI GGCC 3 cut(s) 7, 299, 936
BtrI CACGTC 1 cut(s) 216
BtsCI GGATG 5 cut(s) 40, 285, 646, 734, 832
BtsI GCAGTG 1 cut(s) 372
BtsIMutI CAGTG 3 cut(s) 364, 372, 734
BveI ACCTGC 1 cut(s) 890
Cac8I GCNNGC 2 cut(s) 326, 747
Cfr13I GGNCC 4 cut(s) 5, 274, 902, 935
CspCI CAANNNNNGTGG 2 cut(s) 864, 899
CviAII CATG 1 cut(s) 156
DdeI CTNAG 3 cut(s) 522, 555, 587
DpnI GATC 3 cut(s) 24, 405, 957
DpnII GATC 3 cut(s) 22, 403, 955
DraI TTTAAA 2 cut(s) 387, 703
EaeI YGGCCR 1 cut(s) 297
Eam1104I CTCTTC 4 cut(s) 199, 257, 534, 924
EarI CTCTTC 4 cut(s) 199, 257, 534, 924
Eco130I CCWWGG 1 cut(s) 762
Eco32I GATATC 2 cut(s) 334, 856
Eco47I GGWCC 2 cut(s) 274, 902
Eco57I CTGAAG 1 cut(s) 498
Eco81I CCTNAGG 1 cut(s) 555
Eco91I GGTNACC 1 cut(s) 766
EcoNI CCTNNNNNAGG 2 cut(s) 558, 586
EcoO109I RGGNCCY 2 cut(s) 5, 935
EcoO65I GGTNACC 1 cut(s) 766
EcoRII CCWGG 2 cut(s) 336, 835
EcoRV GATATC 2 cut(s) 334, 856
EcoT14I CCWWGG 1 cut(s) 762
ErhI CCWWGG 1 cut(s) 762
FaeI CATG 1 cut(s) 159
FaqI GGGAC 1 cut(s) 535
FatI CATG 1 cut(s) 155
FbaI TGATCA 1 cut(s) 955
Fnu4HI GCNGC 6 cut(s) 36, 143, 153, 743, 897, 946
FokI GGATG 5 cut(s) 27, 272, 653, 741, 819
Fsp4HI GCNGC 6 cut(s) 36, 143, 153, 743, 897, 946
FspBI CTAG 2 cut(s) 186, 979
GluI GCNGC 6 cut(s) 36, 143, 153, 743, 897, 946
GsuI CTGGAG 1 cut(s) 372
HaeIII GGCC 3 cut(s) 7, 299, 936
Hin1II CATG 1 cut(s) 159
HincII GTYRAC 1 cut(s) 436
HindII GTYRAC 1 cut(s) 436
HindIII AAGCTT 1 cut(s) 381
HinfI GANTC 1 cut(s) 789
HphI GGTGA 1 cut(s) 760
Hpy166II GTNNAC 2 cut(s) 436, 596
Hpy188I TCNGA 1 cut(s) 30
Hpy188III TCNNGA 2 cut(s) 108, 541
Hpy8I GTNNAC 2 cut(s) 436, 596
HpyAV CCTTC 4 cut(s) 68, 466, 558, 884
HpyCH4III ACNGT 2 cut(s) 827, 883
HpyCH4IV ACGT 1 cut(s) 215
HpyCH4V TGCA 8 cut(s) 56, 155, 452, 674, 749, 832, 899, 971
HpyF10VI GCNNNNNNNGC 2 cut(s) 362, 942
HpyF3I CTNAG 3 cut(s) 522, 555, 587
HpySE526I ACGT 1 cut(s) 215
Hsp92II CATG 1 cut(s) 159
Ksp22I TGATCA 1 cut(s) 955
Kzo9I GATC 3 cut(s) 22, 403, 955
LguI GCTCTTC 3 cut(s) 257, 534, 924
LmnI GCTCC 5 cut(s) 83, 110, 228, 353, 362
Lsp1109I GCAGC 5 cut(s) 47, 139, 729, 883, 932
LweI GCATC 5 cut(s) 199, 294, 661, 729, 841
MaeI CTAG 2 cut(s) 186, 979
MaeII ACGT 1 cut(s) 215
MaeIII GTNAC 2 cut(s) 216, 766
MalI GATC 3 cut(s) 24, 405, 957
MboI GATC 3 cut(s) 22, 403, 955
MboII GAAGA 7 cut(s) 216, 244, 491, 521, 629, 899, 911
MfeI CAATTG 1 cut(s) 859
MhlI GDGCHC 1 cut(s) 252
MlsI TGGCCA 1 cut(s) 299
MluCI AATT 5 cut(s) 123, 441, 458, 496, 859
MluNI TGGCCA 1 cut(s) 299
Mox20I TGGCCA 1 cut(s) 299
MscI TGGCCA 1 cut(s) 299
MseI TTAA 5 cut(s) 179, 342, 386, 600, 702
Msp20I TGGCCA 1 cut(s) 299
MspCI CTTAAG 1 cut(s) 599
MspR9I CCNGG 2 cut(s) 338, 837
MunI CAATTG 1 cut(s) 859
Mva1269I GAATGC 1 cut(s) 488
MvaI CCWGG 2 cut(s) 338, 837
MwoI GCNNNNNNNGC 2 cut(s) 362, 942
NdeII GATC 3 cut(s) 22, 403, 955
NlaIII CATG 1 cut(s) 159
NlaIV GGNNCC 3 cut(s) 6, 276, 355
NmuCI GTSAC 2 cut(s) 216, 766
NspI RCATGY 1 cut(s) 159
PciSI GCTCTTC 3 cut(s) 257, 534, 924
PctI GAATGC 1 cut(s) 488
PfeI GAWTC 1 cut(s) 789
PflMI CCANNNNNTGG 4 cut(s) 232, 295, 414, 729
PkrI GCNGC 6 cut(s) 37, 144, 154, 744, 898, 947
Psp6I CCWGG 2 cut(s) 336, 835
PspEI GGTNACC 1 cut(s) 766
PspGI CCWGG 2 cut(s) 336, 835
PspN4I GGNNCC 3 cut(s) 6, 276, 355
PspPI GGNCC 4 cut(s) 5, 274, 902, 935
PsrI GAACNNNNNNTAC 2 cut(s) 482, 514
PstI CTGCAG 1 cut(s) 901
SapI GCTCTTC 3 cut(s) 257, 534, 924
SaqAI TTAA 5 cut(s) 179, 342, 386, 600, 702
SatI GCNGC 6 cut(s) 36, 143, 153, 743, 897, 946
Sau3AI GATC 3 cut(s) 22, 403, 955
Sau96I GGNCC 4 cut(s) 5, 274, 902, 935
ScrFI CCNGG 2 cut(s) 338, 837
SduI GDGCHC 1 cut(s) 252
SfaNI GCATC 5 cut(s) 199, 294, 661, 729, 841
SfcI CTRYAG 2 cut(s) 897, 939
SinI GGWCC 2 cut(s) 274, 902
SmlI CTYRAG 1 cut(s) 599
SmoI CTYRAG 1 cut(s) 599
Sse9I AATT 5 cut(s) 123, 441, 458, 496, 859
SsiI CCGC 3 cut(s) 98, 142, 431
SspMI CTAG 2 cut(s) 186, 979
StyD4I CCNGG 2 cut(s) 336, 835
StyI CCWWGG 1 cut(s) 762
TaaI ACNGT 2 cut(s) 827, 883
TaiI ACGT 1 cut(s) 218
TasI AATT 5 cut(s) 123, 441, 458, 496, 859
TauI GCSGC 1 cut(s) 145
TfiI GAWTC 1 cut(s) 789
Tru1I TTAA 5 cut(s) 179, 342, 386, 600, 702
Tru9I TTAA 5 cut(s) 179, 342, 386, 600, 702
TscAI CASTG 3 cut(s) 364, 372, 741
TseFI GTSAC 2 cut(s) 216, 766
TseI GCWGC 5 cut(s) 35, 152, 742, 896, 945
Tsp45I GTSAC 2 cut(s) 216, 766
TspDTI ATGAA 2 cut(s) 87, 295
TspRI CASTG 3 cut(s) 364, 372, 741
Van91I CCANNNNNTGG 4 cut(s) 232, 295, 414, 729
Vha464I CTTAAG 1 cut(s) 599
VpaK11BI GGWCC 2 cut(s) 274, 902
XagI CCTNNNNNAGG 2 cut(s) 558, 586
XapI RAATTY 2 cut(s) 441, 458
XceI RCATGY 1 cut(s) 159
XcmI CCANNNNNNNNNTGG 1 cut(s) 364
XspI CTAG 2 cut(s) 186, 979
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.