RLG00000034632

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0016796
Physical Location & Seq
Reverse (-)
46775946 .. 46777500
1555 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034632

Sequence Viewer

Length: 933 bp
ATGGGAAGCATTCAAGTTCAACGACCACAAGGAGCAGAGAGGTACGCGGTGGTTACCGGCGCGAACAAGGGTATCGGGTTTGAGGTAGTCCAGCAACTAGCGTGCCGAGGCACTGTGGTGGTGTTGACGGCGAGAGACGAGAAAAGGGGAAGGGAAGCCACAGCCAAGCTCCATCAGGATCATCATCTTCATGCCAATGTAGTCTTCCATCAGCTTGATGTGTTGGATCCACTTAGCGTCCAGTCTTTGGCAAATTTCATACATGACACCTTTGGCAGGCTTGATATCTTGGTTAATAACGCTGGAGCTAGTGGAGTTTTGGTTGTTGAGGAAGAACTCAAAGCCCTGAACATTGATCCCACCTCTTGGCTTTCAGGTCAAGCAGTCAACAAAGTTCAAGGTGCTATAAAATCAACTTACGAAAAGGCTGAGGAATGCTTGAACACCAATTACTATGGTGTCAAAAGAGTGACAGAGGCTCTTCTCCCACTCTTGAAACTCTCTACTGCAGGAGCAAGAATTGTCAATGTCTCATCTCTCAGGAGTGAACTAAAGAGGATTCCAAGTGAAGAGATAAGGAATGAACTTGGAAATGTAGAAGCACTGACAGAGGAGAGAGTGGATGCAGTTCTGAGAAGATTCCTGCATGATTTCAAAGAAAACTCACTTGAAGCCAATGGATGGACAATGATGCTGCCTTCATATAGCATTTCAAAGGCAACCCTGAACGCCTACACAAGAATCCTTGCCAAAAAGTATCCCAAAATGTACATCAACTGTGTGCATCCCGGTTTTGTCAACACCGATCTCAACTGGCATACTGGGACAATGACTCTGCAAGAGGGGGCTGCAGGTCCTCTCAAGTTGGCTCTTCTGCCAGATGGAGGACCTACAGGCTGCTATTTCGATCAAACTGAAGTAGCAGACTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short

Protein Analysis

311

Amino Acids

34.14

Weight (kDa)

6.32

Isoelectric Point (pI)

35.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 15 - 183 3.4e-24 short chain dehydrogenase
KR PF08659 17 - 104 5e-06 KR domain
adh_short_C2 PF13561 20 - 125 3.9e-14 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016796)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g27110
malus_domestica MD00G1032200.v1.1 MD11G1179400.v1.1
prunus_persica Prupe.6G151900_v2.0.a1
pyrus_communis pycom03g11580 pycom11g15490
rosa_chinensis RchiOBHm_Chr5g0049671
rosa_laevigata RLG00000034632
rosa_roxburghii Rroxscaffold_1G00031560
rosa_rugosa Rorug05G0250400
rosa_samantha Rh5BG337500 Rh5CG362200 Rh5DG349700
rosa_wichuraiana Rw5G030840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 842
AccB7I CCANNNNNTGG 3 cut(s) 247, 366, 681
AccII CGCG 2 cut(s) 47, 62
AciI CCGC 1 cut(s) 47
AclWI GGATC 4 cut(s) 186, 221, 234, 350
AcsI RAATTY 1 cut(s) 253
AfaI GTAC 2 cut(s) 44, 770
AfiI CCNNNNNNNGG 5 cut(s) 247, 276, 366, 681, 884
AgsI TTSAA 8 cut(s) 14, 20, 398, 442, 496, 655, 671, 714
AjuI GAANNNNNNNTTGG 2 cut(s) 188, 220
AleI CACNNNNGTG 1 cut(s) 116
AluBI AGCT 3 cut(s) 169, 214, 308
AluI AGCT 3 cut(s) 169, 214, 308
Alw26I GTCTC 2 cut(s) 129, 535
AlwI GGATC 4 cut(s) 186, 221, 234, 350
ApeKI GCWGC 3 cut(s) 694, 848, 897
ApoI RAATTY 1 cut(s) 253
AspLEI GCGC 1 cut(s) 62
AspS9I GGNCC 2 cut(s) 854, 887
AsuC2I CCSGG 1 cut(s) 789
AvaII GGWCC 2 cut(s) 854, 887
BaeI ACNNNNGTAYC 2 cut(s) 55, 88
BamHI GGATCC 1 cut(s) 226
BbsI GAAGAC 1 cut(s) 196
BbvCI CCTCAGC 1 cut(s) 429
BbvI GCAGC 3 cut(s) 681, 835, 884
BccI CCATC 4 cut(s) 180, 216, 675, 875
BceAI ACGGC 1 cut(s) 144
BciVI GTATCC 1 cut(s) 768
BcnI CCSGG 1 cut(s) 789
BcoDI GTCTC 2 cut(s) 129, 535
BfaI CTAG 2 cut(s) 98, 309
BfmI CTRYAG 3 cut(s) 507, 849, 891
BfuAI ACCTGC 1 cut(s) 842
BfuI GTATCC 1 cut(s) 768
BisI GCNGC 3 cut(s) 695, 849, 898
BlsI GCNGC 3 cut(s) 696, 850, 899
Bme1390I CCNGG 1 cut(s) 789
Bme18I GGWCC 2 cut(s) 854, 887
BmgT120I GGNCC 2 cut(s) 854, 887
BmiI GGNNCC 1 cut(s) 228
BmrFI CCNGG 1 cut(s) 789
BmrI ACTGGG 1 cut(s) 831
BmsI GCATC 3 cut(s) 613, 681, 793
BmuI ACTGGG 1 cut(s) 831
BpiI GAAGAC 1 cut(s) 196
BpmI CTGGAG 1 cut(s) 324
Bpu10I CCTNAGC 1 cut(s) 429
BpuEI CTTGAG 1 cut(s) 845
BpuMI CCSGG 1 cut(s) 789
BsaBI GATNNNNATC 1 cut(s) 183
BsaJI CCNNGG 1 cut(s) 106
BsaXI ACNNNNNCTCC 2 cut(s) 306, 336
Bsc4I CCNNNNNNNGG 5 cut(s) 247, 276, 366, 681, 884
Bse118I RCCGGY 1 cut(s) 56
Bse1I ACTGG 3 cut(s) 241, 818, 826
Bse8I GATNNNNATC 1 cut(s) 183
BseDI CCNNGG 1 cut(s) 106
BseGI GGATG 3 cut(s) 628, 686, 784
BseJI GATNNNNATC 1 cut(s) 183
BseLI CCNNNNNNNGG 5 cut(s) 247, 276, 366, 681, 884
BseMII CTCAG 3 cut(s) 420, 553, 623
BseNI ACTGG 3 cut(s) 241, 818, 826
BseRI GAGGAG 1 cut(s) 626
BseXI GCAGC 3 cut(s) 681, 835, 884
Bsh1236I CGCG 2 cut(s) 47, 62
BsiSI CCGG 2 cut(s) 57, 789
BslFI GGGAC 1 cut(s) 838
BslI CCNNNNNNNGG 5 cut(s) 247, 276, 366, 681, 884
BsmAI GTCTC 2 cut(s) 129, 535
BsmBI CGTCTC 1 cut(s) 129
BsmFI GGGAC 1 cut(s) 838
BsmI GAATGC 2 cut(s) 9, 440
Bsp1407I TGTACA 1 cut(s) 768
Bsp143I GATC 5 cut(s) 178, 226, 355, 805, 907
BspACI CCGC 1 cut(s) 47
BspCNI CTCAG 3 cut(s) 421, 552, 624
BspFNI CGCG 2 cut(s) 47, 62
BspLI GGNNCC 1 cut(s) 228
BspMAI CTGCAG 2 cut(s) 511, 853
BspMI ACCTGC 1 cut(s) 842
BspPI GGATC 4 cut(s) 186, 221, 234, 350
BspQI GCTCTTC 2 cut(s) 486, 876
BsrFI RCCGGY 1 cut(s) 56
BsrGI TGTACA 1 cut(s) 768
BsrI ACTGG 3 cut(s) 241, 818, 826
BssAI RCCGGY 1 cut(s) 56
BssECI CCNNGG 1 cut(s) 106
BssMI GATC 5 cut(s) 178, 226, 355, 805, 907
Bst4CI ACNGT 2 cut(s) 115, 779
Bst6I CTCTTC 3 cut(s) 486, 564, 876
BstAUI TGTACA 1 cut(s) 768
BstC8I GCNNGC 2 cut(s) 103, 278
BstDEI CTNAG 4 cut(s) 233, 429, 539, 632
BstEII GGTNACC 1 cut(s) 52
BstENI CCTNNNNNAGG 1 cut(s) 274
BstF5I GGATG 3 cut(s) 628, 686, 784
BstFNI CGCG 2 cut(s) 47, 62
BstHHI GCGC 1 cut(s) 62
BstKTI GATC 5 cut(s) 181, 229, 358, 808, 910
BstMAI GTCTC 2 cut(s) 129, 535
BstMBI GATC 5 cut(s) 178, 226, 355, 805, 907
BstPI GGTNACC 1 cut(s) 52
BstSCI CCNGG 1 cut(s) 787
BstSFI CTRYAG 3 cut(s) 507, 849, 891
BstUI CGCG 2 cut(s) 47, 62
BstV1I GCAGC 3 cut(s) 681, 835, 884
BstV2I GAAGAC 1 cut(s) 196
BstX2I RGATCY 1 cut(s) 226
BstYI RGATCY 1 cut(s) 226
BsuI GTATCC 1 cut(s) 768
BtsCI GGATG 3 cut(s) 628, 686, 784
BtsIMutI CAGTG 2 cut(s) 111, 602
BveI ACCTGC 1 cut(s) 842
Cac8I GCNNGC 2 cut(s) 103, 278
CfoI GCGC 1 cut(s) 62
Cfr10I RCCGGY 1 cut(s) 56
Cfr13I GGNCC 2 cut(s) 854, 887
CseI GACGC 1 cut(s) 226
Csp6I GTAC 2 cut(s) 43, 769
CviAII CATG 3 cut(s) 191, 263, 647
CviQI GTAC 2 cut(s) 43, 769
DdeI CTNAG 4 cut(s) 233, 429, 539, 632
DpnI GATC 5 cut(s) 180, 228, 357, 807, 909
DpnII GATC 5 cut(s) 178, 226, 355, 805, 907
Eam1104I CTCTTC 3 cut(s) 486, 564, 876
EarI CTCTTC 3 cut(s) 486, 564, 876
Eco32I GATATC 1 cut(s) 286
Eco47I GGWCC 2 cut(s) 854, 887
Eco91I GGTNACC 1 cut(s) 52
EcoNI CCTNNNNNAGG 1 cut(s) 274
EcoO109I RGGNCCY 2 cut(s) 854, 887
EcoO65I GGTNACC 1 cut(s) 52
EcoRV GATATC 1 cut(s) 286
Esp3I CGTCTC 1 cut(s) 129
FaeI CATG 3 cut(s) 194, 266, 650
FaiI YATR 9 cut(s) 192, 260, 264, 407, 456, 648, 703, 705, 819
FaqI GGGAC 1 cut(s) 838
FatI CATG 3 cut(s) 190, 262, 646
Fnu4HI GCNGC 3 cut(s) 695, 849, 898
FokI GGATG 3 cut(s) 635, 693, 771
Fsp4HI GCNGC 3 cut(s) 695, 849, 898
FspBI CTAG 2 cut(s) 98, 309
GlaI GCGC 1 cut(s) 61
GluI GCNGC 3 cut(s) 695, 849, 898
GsuI CTGGAG 1 cut(s) 324
HapII CCGG 2 cut(s) 57, 789
HgaI GACGC 1 cut(s) 226
HhaI GCGC 1 cut(s) 62
Hin1II CATG 3 cut(s) 194, 266, 650
Hin6I GCGC 1 cut(s) 60
HinP1I GCGC 1 cut(s) 60
HincII GTYRAC 3 cut(s) 126, 388, 799
HindII GTYRAC 3 cut(s) 126, 388, 799
HinfI GANTC 4 cut(s) 559, 639, 741, 832
HpaII CCGG 2 cut(s) 57, 789
Hpy166II GTNNAC 4 cut(s) 126, 388, 548, 799
Hpy188I TCNGA 2 cut(s) 633, 932
Hpy188III TCNNGA 3 cut(s) 176, 493, 541
Hpy8I GTNNAC 4 cut(s) 126, 388, 548, 799
HpyAV CCTTC 2 cut(s) 144, 708
HpyCH4III ACNGT 2 cut(s) 115, 779
HpyCH4V TGCA 6 cut(s) 509, 626, 646, 784, 838, 851
HpyF3I CTNAG 4 cut(s) 233, 429, 539, 632
Hsp92II CATG 3 cut(s) 194, 266, 650
HspAI GCGC 1 cut(s) 60
Kzo9I GATC 5 cut(s) 178, 226, 355, 805, 907
LguI GCTCTTC 2 cut(s) 486, 876
LmnI GCTCC 4 cut(s) 32, 174, 305, 512
Lsp1109I GCAGC 3 cut(s) 681, 835, 884
LweI GCATC 3 cut(s) 613, 681, 793
MaeI CTAG 2 cut(s) 98, 309
MaeIII GTNAC 2 cut(s) 52, 469
MalI GATC 5 cut(s) 180, 228, 357, 807, 909
MboI GATC 5 cut(s) 178, 226, 355, 805, 907
MboII GAAGA 7 cut(s) 179, 196, 344, 473, 581, 648, 863
MflI RGATCY 1 cut(s) 226
MluCI AATT 3 cut(s) 253, 448, 519
MlyI GAGTC 1 cut(s) 826
MmeI TCCRAC 1 cut(s) 204
MseI TTAA 1 cut(s) 294
MslI CAYNNNNRTG 3 cut(s) 116, 189, 195
MspI CCGG 2 cut(s) 57, 789
MspR9I CCNGG 1 cut(s) 789
Mva1269I GAATGC 2 cut(s) 9, 440
MvnI CGCG 2 cut(s) 47, 62
NciI CCSGG 1 cut(s) 789
NdeII GATC 5 cut(s) 178, 226, 355, 805, 907
NlaIII CATG 3 cut(s) 194, 266, 650
NlaIV GGNNCC 1 cut(s) 228
NmeAIII GCCGAG 1 cut(s) 131
NmuCI GTSAC 1 cut(s) 469
OliI CACNNNNGTG 1 cut(s) 116
PciSI GCTCTTC 2 cut(s) 486, 876
PctI GAATGC 2 cut(s) 9, 440
PfeI GAWTC 3 cut(s) 559, 639, 741
PflMI CCANNNNNTGG 3 cut(s) 247, 366, 681
PkrI GCNGC 3 cut(s) 696, 850, 899
PleI GAGTC 1 cut(s) 826
PpsI GAGTC 1 cut(s) 826
PpuMI RGGWCCY 2 cut(s) 854, 887
Psp5II RGGWCCY 2 cut(s) 854, 887
PspEI GGTNACC 1 cut(s) 52
PspN4I GGNNCC 1 cut(s) 228
PspPI GGNCC 2 cut(s) 854, 887
PspPPI RGGWCCY 2 cut(s) 854, 887
PsrI GAACNNNNNNTAC 2 cut(s) 434, 466
PstI CTGCAG 2 cut(s) 511, 853
PsuI RGATCY 1 cut(s) 226
RsaI GTAC 2 cut(s) 44, 770
RsaNI GTAC 2 cut(s) 43, 769
RseI CAYNNNNRTG 3 cut(s) 116, 189, 195
SapI GCTCTTC 2 cut(s) 486, 876
SaqAI TTAA 1 cut(s) 294
SatI GCNGC 3 cut(s) 695, 849, 898
Sau3AI GATC 5 cut(s) 178, 226, 355, 805, 907
Sau96I GGNCC 2 cut(s) 854, 887
SchI GAGTC 1 cut(s) 826
ScrFI CCNGG 1 cut(s) 789
SfaNI GCATC 3 cut(s) 613, 681, 793
SfcI CTRYAG 3 cut(s) 507, 849, 891
SinI GGWCC 2 cut(s) 854, 887
SmiMI CAYNNNNRTG 3 cut(s) 116, 189, 195
SmlI CTYRAG 1 cut(s) 860
SmoI CTYRAG 1 cut(s) 860
Sse9I AATT 3 cut(s) 253, 448, 519
SsiI CCGC 1 cut(s) 47
SspMI CTAG 2 cut(s) 98, 309
StyD4I CCNGG 1 cut(s) 787
TaaI ACNGT 2 cut(s) 115, 779
TaqI TCGA 1 cut(s) 906
TasI AATT 3 cut(s) 253, 448, 519
TatI WGTACW 1 cut(s) 768
TfiI GAWTC 3 cut(s) 559, 639, 741
Tru1I TTAA 1 cut(s) 294
Tru9I TTAA 1 cut(s) 294
TscAI CASTG 2 cut(s) 118, 609
TseFI GTSAC 1 cut(s) 469
TseI GCWGC 3 cut(s) 694, 848, 897
Tsp45I GTSAC 1 cut(s) 469
TspDTI ATGAA 4 cut(s) 179, 247, 597, 690
TspRI CASTG 2 cut(s) 118, 609
Van91I CCANNNNNTGG 3 cut(s) 247, 366, 681
VpaK11BI GGWCC 2 cut(s) 854, 887
XagI CCTNNNNNAGG 1 cut(s) 274
XapI RAATTY 1 cut(s) 253
XspI CTAG 2 cut(s) 98, 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.