Rh5DG349700

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0016796
Physical Location & Seq
Reverse (-)
48114931 .. 48116474
1544 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG349700.1

Sequence Viewer

Length: 918 bp
ATGGGAAGCATTCAGGGAGCAGAGAGGTACGCGGTGGTTACCGGTGCGAACAAGGGTATCGGGTTTGAGGTAGTCCGGCAACTAGCGTGCCGAGGCATTGTGGTGGTGTTGACGGCGAGAGATGAGAAAAGGGGAAGGGAAGCCACAGCCAAGCTCCATCATGATCATCATCTTCATGCCAATGTAGTCTTCCATCAGCTTGATGTGTTGGATCCACTTAGCGTCCAGTCTTTGGCAAATTTCATACATGACACCTTTGGCAGGCTTGATATCTTGGTTAATAACGCTGGAGCTAGTGGAGTTTTGGTTGTTGAGGAAGAACTCAAAGCCCTGAACATTGATCCCACCTCTTGGCTTTCAGGTCAAGCAGTCAACACAGTTCAAGGTGCTATAAAATCAACTTACGAAAAGGCTGAGGAATGCTTGAACACCAATTACTATGGTGTCAAAAGAGTGACGGAGGCTCTTCTCCCACTCTTGAAACTCTCTACTGCAGGAGCAAGAATTGTCAATGTCTCATCTCTCAGGAGTGAACTAAAGAGGATTCCAAGTGAAGCGATAAGGAATGAACTTGGAAATGTAGAAGCATTGACAGAGGAGAAAGTGGATGCAGTTCTGAGAAGATTCCTGCATGATTTCAAAGAAAATTCACTTGAAGCCAATGGATGGACAATGATGCTGCCTTCATATAGCATTTCAAAGGCAACCCTGAACGCCTACACAAGAATCCTTGCCAAGAAGTATCCCAAAATGTACGTCAACTGTGTGCATCCCGGTTTTGTCAACACCGATCTCAACTGGCATACTGGGACAATGACTCTGCAAGAGGGGGCGGCAGGTCCTCTCAAGTTGGCTCTTCTACCAGATGGAGGACCTACAGGCTGCTATTTCTATCAAACTGAAGTAGCAGACTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short

Protein Analysis

305

Amino Acids

33.5

Weight (kDa)

6.56

Isoelectric Point (pI)

31.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 10 - 178 4.6e-24 short chain dehydrogenase
adh_short_C2 PF13561 15 - 125 5e-14 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016796)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g27110
malus_domestica MD00G1032200.v1.1 MD11G1179400.v1.1
prunus_persica Prupe.6G151900_v2.0.a1
pyrus_communis pycom03g11580 pycom11g15490
rosa_chinensis RchiOBHm_Chr5g0049671
rosa_laevigata RLG00000034632
rosa_roxburghii Rroxscaffold_1G00031560
rosa_rugosa Rorug05G0250400
rosa_samantha Rh5BG337500 Rh5CG362200 Rh5DG349700
rosa_wichuraiana Rw5G030840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 827
AccB7I CCANNNNNTGG 3 cut(s) 232, 351, 666
AccII CGCG 1 cut(s) 32
AciI CCGC 2 cut(s) 32, 833
AclWI GGATC 3 cut(s) 206, 219, 335
AcsI RAATTY 2 cut(s) 238, 646
AfaI GTAC 2 cut(s) 29, 755
AfiI CCNNNNNNNGG 5 cut(s) 232, 261, 351, 666, 869
AgeI ACCGGT 1 cut(s) 41
AgsI TTSAA 6 cut(s) 383, 427, 481, 640, 656, 699
AjuI GAANNNNNNNTTGG 2 cut(s) 173, 205
AluBI AGCT 3 cut(s) 154, 199, 293
AluI AGCT 3 cut(s) 154, 199, 293
Alw26I GTCTC 1 cut(s) 520
AlwI GGATC 3 cut(s) 206, 219, 335
ApeKI GCWGC 2 cut(s) 679, 882
ApoI RAATTY 2 cut(s) 238, 646
ArsI GACNNNNNNTTYG 2 cut(s) 741, 773
AsiGI ACCGGT 1 cut(s) 41
AspS9I GGNCC 2 cut(s) 839, 872
AsuC2I CCSGG 1 cut(s) 774
AvaII GGWCC 2 cut(s) 839, 872
BaeI ACNNNNGTAYC 2 cut(s) 40, 73
BamHI GGATCC 1 cut(s) 211
BbsI GAAGAC 1 cut(s) 181
BbvCI CCTCAGC 1 cut(s) 414
BbvI GCAGC 2 cut(s) 666, 869
BccI CCATC 4 cut(s) 165, 201, 660, 860
BceAI ACGGC 1 cut(s) 129
BciVI GTATCC 1 cut(s) 753
BclI TGATCA 1 cut(s) 163
BcnI CCSGG 1 cut(s) 774
BcoDI GTCTC 1 cut(s) 520
BfaI CTAG 2 cut(s) 83, 294
BfmI CTRYAG 2 cut(s) 492, 876
BfuAI ACCTGC 1 cut(s) 827
BfuI GTATCC 1 cut(s) 753
BisI GCNGC 3 cut(s) 680, 834, 883
BlsI GCNGC 3 cut(s) 681, 835, 884
Bme1390I CCNGG 1 cut(s) 774
Bme18I GGWCC 2 cut(s) 839, 872
BmgT120I GGNCC 2 cut(s) 839, 872
BmiI GGNNCC 1 cut(s) 213
BmrFI CCNGG 1 cut(s) 774
BmrI ACTGGG 1 cut(s) 816
BmsI GCATC 3 cut(s) 598, 666, 778
BmuI ACTGGG 1 cut(s) 816
BpiI GAAGAC 1 cut(s) 181
BpmI CTGGAG 1 cut(s) 309
Bpu10I CCTNAGC 1 cut(s) 414
BpuEI CTTGAG 1 cut(s) 830
BpuMI CCSGG 1 cut(s) 774
BsaBI GATNNNNATC 1 cut(s) 168
BsaJI CCNNGG 1 cut(s) 91
BsaWI WCCGGW 1 cut(s) 41
BsaXI ACNNNNNCTCC 2 cut(s) 291, 321
Bsc4I CCNNNNNNNGG 5 cut(s) 232, 261, 351, 666, 869
Bse118I RCCGGY 1 cut(s) 41
Bse1I ACTGG 3 cut(s) 226, 803, 811
Bse8I GATNNNNATC 1 cut(s) 168
BseDI CCNNGG 1 cut(s) 91
BseGI GGATG 3 cut(s) 613, 671, 769
BseJI GATNNNNATC 1 cut(s) 168
BseLI CCNNNNNNNGG 5 cut(s) 232, 261, 351, 666, 869
BseMII CTCAG 3 cut(s) 405, 538, 608
BseNI ACTGG 3 cut(s) 226, 803, 811
BseRI GAGGAG 1 cut(s) 611
BseXI GCAGC 2 cut(s) 666, 869
Bsh1236I CGCG 1 cut(s) 32
BshTI ACCGGT 1 cut(s) 41
BsiSI CCGG 3 cut(s) 42, 76, 774
BslFI GGGAC 1 cut(s) 823
BslI CCNNNNNNNGG 5 cut(s) 232, 261, 351, 666, 869
BsmAI GTCTC 1 cut(s) 520
BsmFI GGGAC 1 cut(s) 823
BsmI GAATGC 2 cut(s) 9, 425
Bsp143I GATC 4 cut(s) 163, 211, 340, 790
BspACI CCGC 2 cut(s) 32, 833
BspCNI CTCAG 3 cut(s) 406, 537, 609
BspFNI CGCG 1 cut(s) 32
BspHI TCATGA 1 cut(s) 160
BspLI GGNNCC 1 cut(s) 213
BspMAI CTGCAG 1 cut(s) 496
BspMI ACCTGC 1 cut(s) 827
BspPI GGATC 3 cut(s) 206, 219, 335
BspQI GCTCTTC 2 cut(s) 471, 861
BsrFI RCCGGY 1 cut(s) 41
BsrI ACTGG 3 cut(s) 226, 803, 811
BssAI RCCGGY 1 cut(s) 41
BssECI CCNNGG 1 cut(s) 91
BssMI GATC 4 cut(s) 163, 211, 340, 790
Bst4CI ACNGT 2 cut(s) 379, 764
Bst6I CTCTTC 2 cut(s) 471, 861
BstC8I GCNNGC 2 cut(s) 88, 263
BstDEI CTNAG 4 cut(s) 218, 414, 524, 617
BstEII GGTNACC 1 cut(s) 37
BstENI CCTNNNNNAGG 1 cut(s) 259
BstF5I GGATG 3 cut(s) 613, 671, 769
BstFNI CGCG 1 cut(s) 32
BstKTI GATC 4 cut(s) 166, 214, 343, 793
BstMAI GTCTC 1 cut(s) 520
BstMBI GATC 4 cut(s) 163, 211, 340, 790
BstPI GGTNACC 1 cut(s) 37
BstSCI CCNGG 1 cut(s) 772
BstSFI CTRYAG 2 cut(s) 492, 876
BstUI CGCG 1 cut(s) 32
BstV1I GCAGC 2 cut(s) 666, 869
BstV2I GAAGAC 1 cut(s) 181
BstX2I RGATCY 1 cut(s) 211
BstYI RGATCY 1 cut(s) 211
BsuI GTATCC 1 cut(s) 753
BtsCI GGATG 3 cut(s) 613, 671, 769
BveI ACCTGC 1 cut(s) 827
Cac8I GCNNGC 2 cut(s) 88, 263
CciI TCATGA 1 cut(s) 160
Cfr10I RCCGGY 1 cut(s) 41
Cfr13I GGNCC 2 cut(s) 839, 872
CseI GACGC 1 cut(s) 211
Csp6I GTAC 2 cut(s) 28, 754
CspAI ACCGGT 1 cut(s) 41
CviAII CATG 4 cut(s) 161, 176, 248, 632
CviQI GTAC 2 cut(s) 28, 754
DdeI CTNAG 4 cut(s) 218, 414, 524, 617
DpnI GATC 4 cut(s) 165, 213, 342, 792
DpnII GATC 4 cut(s) 163, 211, 340, 790
Eam1104I CTCTTC 2 cut(s) 471, 861
EarI CTCTTC 2 cut(s) 471, 861
Eco32I GATATC 1 cut(s) 271
Eco47I GGWCC 2 cut(s) 839, 872
Eco91I GGTNACC 1 cut(s) 37
EcoNI CCTNNNNNAGG 1 cut(s) 259
EcoO109I RGGNCCY 2 cut(s) 839, 872
EcoO65I GGTNACC 1 cut(s) 37
EcoRV GATATC 1 cut(s) 271
FaeI CATG 4 cut(s) 164, 179, 251, 635
FaqI GGGAC 1 cut(s) 823
FatI CATG 4 cut(s) 160, 175, 247, 631
FbaI TGATCA 1 cut(s) 163
Fnu4HI GCNGC 3 cut(s) 680, 834, 883
FokI GGATG 3 cut(s) 620, 678, 756
Fsp4HI GCNGC 3 cut(s) 680, 834, 883
FspBI CTAG 2 cut(s) 83, 294
GluI GCNGC 3 cut(s) 680, 834, 883
GsuI CTGGAG 1 cut(s) 309
HapII CCGG 3 cut(s) 42, 76, 774
HgaI GACGC 1 cut(s) 211
Hin1II CATG 4 cut(s) 164, 179, 251, 635
HincII GTYRAC 4 cut(s) 111, 373, 760, 784
HindII GTYRAC 4 cut(s) 111, 373, 760, 784
HinfI GANTC 4 cut(s) 544, 624, 726, 817
HpaII CCGG 3 cut(s) 42, 76, 774
Hpy166II GTNNAC 5 cut(s) 111, 373, 533, 760, 784
Hpy188I TCNGA 2 cut(s) 618, 917
Hpy188III TCNNGA 3 cut(s) 161, 478, 526
Hpy8I GTNNAC 5 cut(s) 111, 373, 533, 760, 784
HpyAV CCTTC 2 cut(s) 129, 693
HpyCH4III ACNGT 2 cut(s) 379, 764
HpyCH4IV ACGT 1 cut(s) 756
HpyCH4V TGCA 5 cut(s) 494, 611, 631, 769, 823
HpyF3I CTNAG 4 cut(s) 218, 414, 524, 617
HpySE526I ACGT 1 cut(s) 756
Hsp92II CATG 4 cut(s) 164, 179, 251, 635
Ksp22I TGATCA 1 cut(s) 163
Kzo9I GATC 4 cut(s) 163, 211, 340, 790
LguI GCTCTTC 2 cut(s) 471, 861
LmnI GCTCC 4 cut(s) 17, 159, 290, 497
Lsp1109I GCAGC 2 cut(s) 666, 869
LweI GCATC 3 cut(s) 598, 666, 778
MaeI CTAG 2 cut(s) 83, 294
MaeII ACGT 1 cut(s) 756
MaeIII GTNAC 2 cut(s) 37, 454
MalI GATC 4 cut(s) 165, 213, 342, 792
MboI GATC 4 cut(s) 163, 211, 340, 790
MboII GAAGA 6 cut(s) 164, 181, 329, 458, 633, 848
MflI RGATCY 1 cut(s) 211
MluCI AATT 4 cut(s) 238, 433, 504, 646
MlyI GAGTC 1 cut(s) 811
MmeI TCCRAC 1 cut(s) 189
MseI TTAA 1 cut(s) 279
MslI CAYNNNNRTG 3 cut(s) 101, 174, 180
MspI CCGG 3 cut(s) 42, 76, 774
MspR9I CCNGG 1 cut(s) 774
Mva1269I GAATGC 2 cut(s) 9, 425
MvnI CGCG 1 cut(s) 32
NciI CCSGG 1 cut(s) 774
NdeII GATC 4 cut(s) 163, 211, 340, 790
NlaIII CATG 4 cut(s) 164, 179, 251, 635
NlaIV GGNNCC 1 cut(s) 213
NmeAIII GCCGAG 1 cut(s) 116
NmuCI GTSAC 1 cut(s) 454
PagI TCATGA 1 cut(s) 160
PciSI GCTCTTC 2 cut(s) 471, 861
PctI GAATGC 2 cut(s) 9, 425
PfeI GAWTC 3 cut(s) 544, 624, 726
PflMI CCANNNNNTGG 3 cut(s) 232, 351, 666
PinAI ACCGGT 1 cut(s) 41
PkrI GCNGC 3 cut(s) 681, 835, 884
PleI GAGTC 1 cut(s) 811
PpsI GAGTC 1 cut(s) 811
PpuMI RGGWCCY 2 cut(s) 839, 872
Psp5II RGGWCCY 2 cut(s) 839, 872
PspEI GGTNACC 1 cut(s) 37
PspN4I GGNNCC 1 cut(s) 213
PspPI GGNCC 2 cut(s) 839, 872
PspPPI RGGWCCY 2 cut(s) 839, 872
PsrI GAACNNNNNNTAC 2 cut(s) 419, 451
PstI CTGCAG 1 cut(s) 496
PsuI RGATCY 1 cut(s) 211
RsaI GTAC 2 cut(s) 29, 755
RsaNI GTAC 2 cut(s) 28, 754
RseI CAYNNNNRTG 3 cut(s) 101, 174, 180
SapI GCTCTTC 2 cut(s) 471, 861
SaqAI TTAA 1 cut(s) 279
SatI GCNGC 3 cut(s) 680, 834, 883
Sau3AI GATC 4 cut(s) 163, 211, 340, 790
Sau96I GGNCC 2 cut(s) 839, 872
SchI GAGTC 1 cut(s) 811
ScrFI CCNGG 1 cut(s) 774
SfaNI GCATC 3 cut(s) 598, 666, 778
SfcI CTRYAG 2 cut(s) 492, 876
SinI GGWCC 2 cut(s) 839, 872
SmiMI CAYNNNNRTG 3 cut(s) 101, 174, 180
SmlI CTYRAG 1 cut(s) 845
SmoI CTYRAG 1 cut(s) 845
Sse9I AATT 4 cut(s) 238, 433, 504, 646
SsiI CCGC 2 cut(s) 32, 833
SspMI CTAG 2 cut(s) 83, 294
StyD4I CCNGG 1 cut(s) 772
TaaI ACNGT 2 cut(s) 379, 764
TaiI ACGT 1 cut(s) 759
TasI AATT 4 cut(s) 238, 433, 504, 646
TauI GCSGC 1 cut(s) 836
TfiI GAWTC 3 cut(s) 544, 624, 726
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TseFI GTSAC 1 cut(s) 454
TseI GCWGC 2 cut(s) 679, 882
Tsp45I GTSAC 1 cut(s) 454
TspDTI ATGAA 4 cut(s) 164, 232, 582, 675
TspGWI ACGGA 1 cut(s) 473
Van91I CCANNNNNTGG 3 cut(s) 232, 351, 666
VpaK11BI GGWCC 2 cut(s) 839, 872
XagI CCTNNNNNAGG 1 cut(s) 259
XapI RAATTY 2 cut(s) 238, 646
XspI CTAG 2 cut(s) 83, 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.