pycom03g11580

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0016796
Physical Location & Seq
Reverse (-)
11469217 .. 11472595
3379 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g11580.6

Sequence Viewer

Length: 1197 bp
ATGGTGGGTTCAGAAAAAAAAAAATCAAAAACTGAGCCGAAACCGAAAAAACCTAAACCCCAAAAAAAAAAAAAAAAATATTCGATGGTTAGAAACCAAATCGAATTGAAGTATTGCAAAACGACTCCGTCCCCCCCCCCCCCCCCCCTCTCTCTCGTCTTCTTCGAAGAATCGATCGATCCAAAGTTAACCGAGGAGGAACTCGCTGTCGATGCCACTAGCCGTCTCACTCTCACACCTCGCCGACTTCTCCTGGCCGTTGCGCATCCAGAACTCGAATCAATAACGTACAAATATGAAAGAAAAAGGAAATTGCTTTTGGATTTTGGATTTTGGTTTTTGGCTGAGAAAGAATTAGAACTTGATTCGAGTGGAGCTGCAGAGAACATTCAACCTGTTGTGCTCCACAGTTTCAGGAAGAAAGTAAGATCACAAGGCAAATCCAAGCATTATACAAGAATGGGAAGCAATCAAGGAGATGGAGCAGAGACAGAGAGGTGTGCAGTGGTTAGTGGTGCAAACAAGGGTATTGGCTTGGAGGTGGTGAGGCAGCTTGCATCTCAAGGGGTGGTGGTGGTGTTGACGGCCAGGGATGAGAAGAGGGGAGGAGAAGCAACATCAAAGCTCCACAAGTTGGGTCTGTCAAATGTTGTCTTCCATCAACTTGATGTCTTGAATCCAGTTAGCATCCACTCCCTGGCCAAGTTCATACACGCCAGATTTGGCAGGCTTGATATCTTGGTTAATAATGCTGGAGCTAATGGAGCACTGTTGGATGAGAAAGTTATAAAATCCCTAAACATTGACCCCAAAACTTGGAGAATACCAAGTGAAGAGATCCGAAATTTGCTCGGGGATGTAGAAGCATTGACAGAGGAGAAAGTGGATGCAGTTTTGACAAGATTTCTGCATGATTTTAAACGAAACGAACTCGAAGTGAATGGATGGACAATGATGCTACCTGCATATAGCATTTCCAAAGCCACCCTCAATGCCTACACTAGAATCCTTGCCAACAAGTACCCAAACATGTGCATCAACTGTGTGCATCCAGGCTTTGTTAATACAGACCTCAATTGGCATACAGGGACCATGACTGTCGAAGAAGGGGCTGCCGGTCTGGTCAAGTTGGCTCTTCTACCCCGTGGAGGCTCTTCCGGCTGCTATTTCGATCAAACTGAAGTCGCAGATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

399

Amino Acids

44.36

Weight (kDa)

9.24

Isoelectric Point (pI)

34.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016796)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g27110
malus_domestica MD00G1032200.v1.1 MD11G1179400.v1.1
prunus_persica Prupe.6G151900_v2.0.a1
pyrus_communis pycom03g11580 pycom11g15490
rosa_chinensis RchiOBHm_Chr5g0049671
rosa_laevigata RLG00000034632
rosa_roxburghii Rroxscaffold_1G00031560
rosa_rugosa Rorug05G0250400
rosa_samantha Rh5BG337500 Rh5CG362200 Rh5DG349700
rosa_wichuraiana Rw5G030840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 788
Acc16I TGCGCA 1 cut(s) 264
Acc36I ACCTGC 1 cut(s) 970
AccB7I CCANNNNNTGG 3 cut(s) 634, 697, 816
AclWI GGATC 2 cut(s) 173, 832
AcoI YGGCCR 3 cut(s) 255, 585, 699
AcsI RAATTY 1 cut(s) 844
AfaI GTAC 2 cut(s) 290, 1022
AfiI CCNNNNNNNGG 4 cut(s) 634, 697, 816, 1148
AflIII ACRYGT 1 cut(s) 1029
AgsI TTSAA 3 cut(s) 109, 392, 676
AjnI CCWGG 4 cut(s) 252, 587, 696, 1051
AjuI GAANNNNNNNTTGG 2 cut(s) 302, 334
AluBI AGCT 4 cut(s) 377, 553, 625, 758
AluI AGCT 4 cut(s) 377, 553, 625, 758
Alw21I GWGCWC 2 cut(s) 405, 769
Alw26I GTCTC 2 cut(s) 230, 482
AlwI GGATC 2 cut(s) 173, 832
Ama87I CYCGRG 1 cut(s) 851
AoxI GGCC 3 cut(s) 255, 585, 699
ApeKI GCWGC 4 cut(s) 377, 550, 1112, 1161
ApoI RAATTY 1 cut(s) 844
AspLEI GCGC 1 cut(s) 265
AspS9I GGNCC 1 cut(s) 1089
AsuHPI GGTGA 1 cut(s) 556
AsuII TTCGAA 1 cut(s) 165
AvaI CYCGRG 1 cut(s) 851
AvaII GGWCC 1 cut(s) 1089
BalI TGGCCA 1 cut(s) 701
BbsI GAAGAC 2 cut(s) 151, 646
Bbv12I GWGCWC 2 cut(s) 405, 769
BbvI GCAGC 4 cut(s) 364, 562, 1099, 1148
BccI CCATC 4 cut(s) 79, 473, 666, 939
BceAI ACGGC 3 cut(s) 207, 242, 600
BciT130I CCWGG 4 cut(s) 254, 589, 698, 1053
BcoDI GTCTC 2 cut(s) 230, 482
BfaI CTAG 2 cut(s) 219, 1002
BfmI CTRYAG 1 cut(s) 378
BfuAI ACCTGC 1 cut(s) 970
BisI GCNGC 4 cut(s) 378, 551, 1113, 1162
BlsI GCNGC 4 cut(s) 379, 552, 1114, 1163
Bme1390I CCNGG 4 cut(s) 254, 589, 698, 1053
Bme18I GGWCC 1 cut(s) 1089
BmeT110I CYCGRG 1 cut(s) 851
BmgT120I GGNCC 1 cut(s) 1089
BmiI GGNNCC 1 cut(s) 1090
BmrFI CCNGG 4 cut(s) 254, 589, 698, 1053
BmsI GCATC 8 cut(s) 202, 274, 566, 696, 877, 945, 1044, 1057
BpiI GAAGAC 2 cut(s) 151, 646
BpmI CTGGAG 1 cut(s) 774
Bpu14I TTCGAA 1 cut(s) 165
BpuEI CTTGAG 1 cut(s) 546
Bsa29I ATCGAT 2 cut(s) 173, 177
BsaJI CCNNGG 4 cut(s) 192, 588, 696, 1144
Bsc4I CCNNNNNNNGG 4 cut(s) 634, 697, 816, 1148
Bse118I RCCGGY 1 cut(s) 1115
Bse1I ACTGG 1 cut(s) 680
BseBI CCWGG 4 cut(s) 254, 589, 698, 1053
BseCI ATCGAT 2 cut(s) 173, 177
BseDI CCNNGG 4 cut(s) 192, 588, 696, 1144
BseGI GGATG 8 cut(s) 265, 598, 687, 781, 862, 892, 950, 1048
BseLI CCNNNNNNNGG 4 cut(s) 634, 697, 816, 1148
BseMII CTCAG 2 cut(s) 24, 336
BseNI ACTGG 1 cut(s) 680
BseRI GAGGAG 3 cut(s) 209, 621, 890
BseXI GCAGC 4 cut(s) 364, 562, 1099, 1148
BsgI GTGCAG 1 cut(s) 522
Bsh1285I CGRYCG 1 cut(s) 177
BshFI GGCC 3 cut(s) 257, 587, 701
BshVI ATCGAT 2 cut(s) 173, 177
BsiEI CGRYCG 1 cut(s) 177
BsiHKAI GWGCWC 2 cut(s) 405, 769
BsiHKCI CYCGRG 1 cut(s) 851
BsiSI CCGG 2 cut(s) 1116, 1158
BslFI GGGAC 2 cut(s) 115, 1102
BslI CCNNNNNNNGG 4 cut(s) 634, 697, 816, 1148
BsmAI GTCTC 2 cut(s) 230, 482
BsmBI CGTCTC 1 cut(s) 230
BsmFI GGGAC 2 cut(s) 115, 1102
BsnI GGCC 3 cut(s) 257, 587, 701
BsoBI CYCGRG 1 cut(s) 851
Bsp119I TTCGAA 1 cut(s) 165
Bsp1286I GDGCHC 2 cut(s) 405, 769
Bsp143I GATC 5 cut(s) 174, 178, 428, 837, 1171
BspANI GGCC 3 cut(s) 257, 587, 701
BspCNI CTCAG 2 cut(s) 25, 337
BspDI ATCGAT 2 cut(s) 173, 177
BspLI GGNNCC 1 cut(s) 1090
BspMAI CTGCAG 1 cut(s) 382
BspMI ACCTGC 1 cut(s) 970
BspPI GGATC 2 cut(s) 173, 832
BspQI GCTCTTC 2 cut(s) 1140, 1159
BspT104I TTCGAA 1 cut(s) 165
BsrFI RCCGGY 1 cut(s) 1115
BsrI ACTGG 1 cut(s) 680
BssAI RCCGGY 1 cut(s) 1115
BssECI CCNNGG 4 cut(s) 192, 588, 696, 1144
BssMI GATC 5 cut(s) 174, 178, 428, 837, 1171
Bst2UI CCWGG 4 cut(s) 254, 589, 698, 1053
Bst4CI ACNGT 4 cut(s) 410, 771, 1043, 1099
Bst6I CTCTTC 4 cut(s) 593, 828, 1140, 1159
BstBI TTCGAA 1 cut(s) 165
BstC8I GCNNGC 2 cut(s) 555, 728
BstDEI CTNAG 2 cut(s) 33, 345
BstDSI CCRYGG 1 cut(s) 1144
BstF5I GGATG 8 cut(s) 265, 598, 687, 781, 862, 892, 950, 1048
BstHHI GCGC 1 cut(s) 265
BstKTI GATC 5 cut(s) 177, 181, 431, 840, 1174
BstMAI GTCTC 2 cut(s) 230, 482
BstMBI GATC 5 cut(s) 174, 178, 428, 837, 1171
BstMCI CGRYCG 1 cut(s) 177
BstMWI GCNNNNNNNGC 3 cut(s) 212, 764, 1158
BstNI CCWGG 4 cut(s) 254, 589, 698, 1053
BstNSI RCATGY 1 cut(s) 1033
BstSCI CCNGG 4 cut(s) 252, 587, 696, 1051
BstSFI CTRYAG 1 cut(s) 378
BstV1I GCAGC 4 cut(s) 364, 562, 1099, 1148
BstV2I GAAGAC 2 cut(s) 151, 646
BstX2I RGATCY 1 cut(s) 837
BstYI RGATCY 1 cut(s) 837
Bsu15I ATCGAT 2 cut(s) 173, 177
BsuRI GGCC 3 cut(s) 257, 587, 701
BsuTUI ATCGAT 2 cut(s) 173, 177
BtgI CCRYGG 1 cut(s) 1144
BtsCI GGATG 8 cut(s) 265, 598, 687, 781, 862, 892, 950, 1048
BtsI GCAGTG 1 cut(s) 510
BtsIMutI CAGTG 2 cut(s) 510, 767
BveI ACCTGC 1 cut(s) 970
Cac8I GCNNGC 2 cut(s) 555, 728
CfoI GCGC 1 cut(s) 265
Cfr10I RCCGGY 1 cut(s) 1115
Cfr13I GGNCC 1 cut(s) 1089
ClaI ATCGAT 2 cut(s) 173, 177
Csp6I GTAC 2 cut(s) 289, 1021
CviAII CATG 3 cut(s) 911, 1030, 1093
CviQI GTAC 2 cut(s) 289, 1021
DdeI CTNAG 2 cut(s) 33, 345
DpnI GATC 5 cut(s) 176, 180, 430, 839, 1173
DpnII GATC 5 cut(s) 174, 178, 428, 837, 1171
DraI TTTAAA 1 cut(s) 919
EaeI YGGCCR 3 cut(s) 255, 585, 699
Eam1104I CTCTTC 4 cut(s) 593, 828, 1140, 1159
EarI CTCTTC 4 cut(s) 593, 828, 1140, 1159
Eco32I GATATC 1 cut(s) 736
Eco47I GGWCC 1 cut(s) 1089
Eco88I CYCGRG 1 cut(s) 851
EcoRII CCWGG 4 cut(s) 252, 587, 696, 1051
EcoRV GATATC 1 cut(s) 736
Esp3I CGTCTC 1 cut(s) 230
FaeI CATG 3 cut(s) 914, 1033, 1096
FaqI GGGAC 2 cut(s) 115, 1102
FatI CATG 3 cut(s) 910, 1029, 1092
Fnu4HI GCNGC 4 cut(s) 378, 551, 1113, 1162
FokI GGATG 8 cut(s) 252, 605, 674, 788, 869, 899, 957, 1035
Fsp4HI GCNGC 4 cut(s) 378, 551, 1113, 1162
FspBI CTAG 2 cut(s) 219, 1002
FspI TGCGCA 1 cut(s) 264
GlaI GCGC 1 cut(s) 264
GluI GCNGC 4 cut(s) 378, 551, 1113, 1162
GsuI CTGGAG 1 cut(s) 774
HaeIII GGCC 3 cut(s) 257, 587, 701
HapII CCGG 2 cut(s) 1116, 1158
HhaI GCGC 1 cut(s) 265
Hin1II CATG 3 cut(s) 914, 1033, 1096
Hin6I GCGC 1 cut(s) 263
HinP1I GCGC 1 cut(s) 263
HincII GTYRAC 2 cut(s) 189, 582
HindII GTYRAC 2 cut(s) 189, 582
HinfI GANTC 6 cut(s) 124, 170, 278, 365, 676, 1005
HpaI GTTAAC 1 cut(s) 189
HpaII CCGG 2 cut(s) 1116, 1158
HphI GGTGA 1 cut(s) 556
Hpy166II GTNNAC 2 cut(s) 189, 582
Hpy188I TCNGA 2 cut(s) 13, 842
Hpy188III TCNNGA 3 cut(s) 269, 415, 673
Hpy8I GTNNAC 2 cut(s) 189, 582
HpyAV CCTTC 1 cut(s) 1100
HpyCH4III ACNGT 4 cut(s) 410, 771, 1043, 1099
HpyCH4IV ACGT 1 cut(s) 287
HpyF10VI GCNNNNNNNGC 3 cut(s) 212, 764, 1158
HpyF3I CTNAG 2 cut(s) 33, 345
HpySE526I ACGT 1 cut(s) 287
Hsp92II CATG 3 cut(s) 914, 1033, 1096
HspAI GCGC 1 cut(s) 263
KspAI GTTAAC 1 cut(s) 189
Kzo9I GATC 5 cut(s) 174, 178, 428, 837, 1171
LguI GCTCTTC 2 cut(s) 1140, 1159
LmnI GCTCC 6 cut(s) 374, 408, 482, 630, 755, 764
Lsp1109I GCAGC 4 cut(s) 364, 562, 1099, 1148
LweI GCATC 8 cut(s) 202, 274, 566, 696, 877, 945, 1044, 1057
MaeI CTAG 2 cut(s) 219, 1002
MaeII ACGT 1 cut(s) 287
MalI GATC 5 cut(s) 176, 180, 430, 839, 1173
MboI GATC 5 cut(s) 174, 178, 428, 837, 1171
MfeI CAATTG 1 cut(s) 1075
MflI RGATCY 1 cut(s) 837
MhlI GDGCHC 2 cut(s) 405, 769
MlsI TGGCCA 1 cut(s) 701
MluCI AATT 5 cut(s) 104, 311, 353, 844, 1075
MluNI TGGCCA 1 cut(s) 701
MlyI GAGTC 1 cut(s) 118
MmeI TCCRAC 1 cut(s) 753
Mox20I TGGCCA 1 cut(s) 701
MscI TGGCCA 1 cut(s) 701
MseI TTAA 5 cut(s) 188, 744, 918, 1062, 1195
Msp20I TGGCCA 1 cut(s) 701
MspI CCGG 2 cut(s) 1116, 1158
MspR9I CCNGG 4 cut(s) 254, 589, 698, 1053
MunI CAATTG 1 cut(s) 1075
MvaI CCWGG 4 cut(s) 254, 589, 698, 1053
MwoI GCNNNNNNNGC 3 cut(s) 212, 764, 1158
NdeII GATC 5 cut(s) 174, 178, 428, 837, 1171
NlaIII CATG 3 cut(s) 914, 1033, 1096
NlaIV GGNNCC 1 cut(s) 1090
NsbI TGCGCA 1 cut(s) 264
NspI RCATGY 1 cut(s) 1033
NspV TTCGAA 1 cut(s) 165
PciI ACATGT 1 cut(s) 1029
PciSI GCTCTTC 2 cut(s) 1140, 1159
PcsI WCGNNNNNNNCGW 1 cut(s) 162
PfeI GAWTC 5 cut(s) 170, 278, 365, 676, 1005
PflFI GACNNNGTC 1 cut(s) 127
PflMI CCANNNNNTGG 3 cut(s) 634, 697, 816
PkrI GCNGC 4 cut(s) 379, 552, 1114, 1163
Ple19I CGATCG 1 cut(s) 177
PleI GAGTC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 118
PscI ACATGT 1 cut(s) 1029
PsiI TTATAA 1 cut(s) 788
Psp6I CCWGG 4 cut(s) 252, 587, 696, 1051
PspGI CCWGG 4 cut(s) 252, 587, 696, 1051
PspN4I GGNNCC 1 cut(s) 1090
PspPI GGNCC 1 cut(s) 1089
PstI CTGCAG 1 cut(s) 382
PsuI RGATCY 1 cut(s) 837
PsyI GACNNNGTC 1 cut(s) 127
PvuI CGATCG 1 cut(s) 177
RsaI GTAC 2 cut(s) 290, 1022
RsaNI GTAC 2 cut(s) 289, 1021
SapI GCTCTTC 2 cut(s) 1140, 1159
SaqAI TTAA 5 cut(s) 188, 744, 918, 1062, 1195
SatI GCNGC 4 cut(s) 378, 551, 1113, 1162
Sau3AI GATC 5 cut(s) 174, 178, 428, 837, 1171
Sau96I GGNCC 1 cut(s) 1089
SchI GAGTC 1 cut(s) 118
ScrFI CCNGG 4 cut(s) 254, 589, 698, 1053
SduI GDGCHC 2 cut(s) 405, 769
SfaNI GCATC 8 cut(s) 202, 274, 566, 696, 877, 945, 1044, 1057
SfcI CTRYAG 1 cut(s) 378
SfuI TTCGAA 1 cut(s) 165
SinI GGWCC 1 cut(s) 1089
SmlI CTYRAG 1 cut(s) 561
SmoI CTYRAG 1 cut(s) 561
Sse9I AATT 5 cut(s) 104, 311, 353, 844, 1075
SspI AATATT 1 cut(s) 80
SspMI CTAG 2 cut(s) 219, 1002
StyD4I CCNGG 4 cut(s) 252, 587, 696, 1051
TaaI ACNGT 4 cut(s) 410, 771, 1043, 1099
TaiI ACGT 1 cut(s) 290
TasI AATT 5 cut(s) 104, 311, 353, 844, 1075
TfiI GAWTC 5 cut(s) 170, 278, 365, 676, 1005
Tru1I TTAA 5 cut(s) 188, 744, 918, 1062, 1195
Tru9I TTAA 5 cut(s) 188, 744, 918, 1062, 1195
TscAI CASTG 2 cut(s) 510, 774
TseI GCWGC 4 cut(s) 377, 550, 1112, 1161
TspDTI ATGAA 2 cut(s) 312, 697
TspGWI ACGGA 1 cut(s) 117
TspRI CASTG 2 cut(s) 510, 774
Tth111I GACNNNGTC 1 cut(s) 127
Van91I CCANNNNNTGG 3 cut(s) 634, 697, 816
VpaK11BI GGWCC 1 cut(s) 1089
XapI RAATTY 1 cut(s) 844
XceI RCATGY 1 cut(s) 1033
XspI CTAG 2 cut(s) 219, 1002
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.