Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0016291

Physical Location & Seq

Genomic Coordinates Forward (+)

24576101 .. 24576979

Gene Structure 879 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g30941.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGCATGACTTAGAAGCTAGCCGTCAATTGGATGTTTGCAGCCACAAGTCTTCTCTGATTCCTAAAGACCTTGATTCAAAGGAAGCAATCAAAATTGTTAATGAGCATATTAAGGACTGCACTAGGCCTCCTGATGACTTCCAAGTTGATGATCTATGTGCTACCTACAAAATTTGCTTTGAGTTTTCGATTACTTTCTCTGAATATAAAATGGAGAAAGAGTTGCCCGTGAATTTTCATGAATACCGTATGAAGTTGCGGTGTTTGGCTGCTGCTCAGGACAAGTTGAAGGAAGCAGGTACCTCAGACATGATTGTCAGCATGAGGAAGAAAATTGTGTCATGCGCCATAACACTTGCTTCAAGCTTGTCAAATGATTTGTTGGCAAATGGTACTGTTGAAATTGTTCAGTGCTTTAGAAATAAATTGAATGACAAGCTGTTTGGCTACCACATGGAGGTAATTAAGCTTTTCGAGGAATTTTTGAATGTGACATATGATTCTGACACTGAGCAACATGGTCTGATTCAAGATGATTTTTGCAAAGAAGAGTTGGTGAATCAGTTTTTCGAGTCAGGTCATTTTGATAAGGCAAAAGAGGTACTATTTGATATAATTAATCACTCTTTGGACTCTATCATGATTACTGATAATGGCCTCTTGGATGATAATAATATTGATGTAGAGAGTTTGTTTGCTAGAGACAAATATGATGAAATGCAAAAGAATTCTGGAAAGGTGTTGGTGGGAATGTTGGAGAAATGGAAATCAAAAGTTAAGGCTGAAATTGATAAAAGACTATCTTCTTCTGAGGACAGTATGCTCCACTGGCACCCATTCTCGATCACAGCTGTTGTTGTGGTTCATTCTTTTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

293

Amino Acids

33.55

Weight (kDa)

5.12

Isoelectric Point (pI)

31.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016291)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g30941 FvH4_5g02451 FvH4_5g17361 FvH4_5g17362
rosa_chinensis	RchiOBHm_Chr1g0383661 RchiOBHm_Chr4g0407001 RchiOBHm_Chr5g0029671
rosa_multiflora	Rmu_sc0000665.1_g000017 Rmu_sc0011574.1_g000005 Rmu_sc0011574.1_g000006 Rmu_ssc0000135.1_g000005
rosa_roxburghii	Rroxscaffold_3G00256940 Rroxscaffold_4G00289440 Rroxscaffold_7G00179290
rosa_rugosa	Rorug04G0076400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	314
Acc36I	ACCTGC	1 cut(s)	287
Acc65I	GGTACC	1 cut(s)	299
AccB1I	GGYRCC	2 cut(s)	299, 831
AciI	CCGC	1 cut(s)	259
AcsI	RAATTY	4 cut(s)	171, 232, 479, 727
AfaI	GTAC	3 cut(s)	301, 394, 603
AfiI	CCNNNNNNNGG	2 cut(s)	28, 457
AgsI	TTSAA	7 cut(s)	78, 289, 363, 401, 430, 487, 530
AluBI	AGCT	5 cut(s)	17, 366, 439, 469, 851
AluI	AGCT	5 cut(s)	17, 366, 439, 469, 851
Alw26I	GTCTC	1 cut(s)	696
AoxI	GGCC	2 cut(s)	125, 655
ApeKI	GCWGC	3 cut(s)	39, 269, 272
ApoI	RAATTY	4 cut(s)	171, 232, 479, 727
ArsI	GACNNNNNNTTYG	2 cut(s)	425, 457
AseI	ATTAAT	1 cut(s)	618
Asp700I	GAANNNNTTC	1 cut(s)	405
Asp718I	GGTACC	1 cut(s)	299
AspLEI	GCGC	1 cut(s)	347
AsuHPI	GGTGA	1 cut(s)	568
AsuNHI	GCTAGC	1 cut(s)	17
BanI	GGYRCC	2 cut(s)	299, 831
BbsI	GAAGAC	1 cut(s)	42
BbvI	GCAGC	3 cut(s)	51, 256, 259
BceAI	ACGGC	1 cut(s)	6
BcoDI	GTCTC	1 cut(s)	696
BfaI	CTAG	3 cut(s)	18, 123, 699
BfuAI	ACCTGC	1 cut(s)	287
BisI	GCNGC	3 cut(s)	40, 270, 273
BlsI	GCNGC	3 cut(s)	41, 271, 274
BmiI	GGNNCC	2 cut(s)	301, 833
BmtI	GCTAGC	1 cut(s)	21
BpiI	GAAGAC	1 cut(s)	42
Bpu10I	CCTNAGC	1 cut(s)	276
BsaXI	ACNNNNNCTCC	4 cut(s)	112, 142, 206, 236
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 457
Bse1I	ACTGG	1 cut(s)	833
BseGI	GGATG	2 cut(s)	37, 670
BseLI	CCNNNNNNNGG	2 cut(s)	28, 457
BseMII	CTCAG	4 cut(s)	290, 318, 501, 801
BseNI	ACTGG	1 cut(s)	833
BseXI	GCAGC	3 cut(s)	51, 256, 259
BsgI	GTGCAG	1 cut(s)	103
BshFI	GGCC	2 cut(s)	127, 657
BshNI	GGYRCC	2 cut(s)	299, 831
BslI	CCNNNNNNNGG	2 cut(s)	28, 457
BsmAI	GTCTC	1 cut(s)	696
BsnI	GGCC	2 cut(s)	127, 657
Bsp143I	GATC	2 cut(s)	151, 843
BspACI	CCGC	1 cut(s)	259
BspANI	GGCC	2 cut(s)	127, 657
BspCNI	CTCAG	4 cut(s)	289, 317, 502, 802
BspHI	TCATGA	2 cut(s)	238, 639
BspLI	GGNNCC	2 cut(s)	301, 833
BspMI	ACCTGC	1 cut(s)	287
BspOI	GCTAGC	1 cut(s)	21
BspT107I	GGYRCC	2 cut(s)	299, 831
BsrI	ACTGG	1 cut(s)	833
BssMI	GATC	2 cut(s)	151, 843
Bst4CI	ACNGT	3 cut(s)	248, 397, 818
Bst6I	CTCTTC	1 cut(s)	543
BstC8I	GCNNGC	1 cut(s)	19
BstDEI	CTNAG	5 cut(s)	10, 276, 304, 510, 810
BstF5I	GGATG	2 cut(s)	37, 670
BstHHI	GCGC	1 cut(s)	347
BstKTI	GATC	2 cut(s)	154, 846
BstMAI	GTCTC	1 cut(s)	696
BstMBI	GATC	2 cut(s)	151, 843
BstMWI	GCNNNNNNNGC	1 cut(s)	829
BstV1I	GCAGC	3 cut(s)	51, 256, 259
BstV2I	GAAGAC	1 cut(s)	42
BsuRI	GGCC	2 cut(s)	127, 657
BtsCI	GGATG	2 cut(s)	37, 670
BtsIMutI	CAGTG	3 cut(s)	416, 507, 826
BveI	ACCTGC	1 cut(s)	287
Cac8I	GCNNGC	1 cut(s)	19
CciI	TCATGA	2 cut(s)	238, 639
CfoI	GCGC	1 cut(s)	347
Csp6I	GTAC	3 cut(s)	300, 393, 602
CviAII	CATG	8 cut(s)	5, 239, 310, 322, 342, 454, 518, 640
CviQI	GTAC	3 cut(s)	300, 393, 602
DdeI	CTNAG	5 cut(s)	10, 276, 304, 510, 810
DpnI	GATC	2 cut(s)	153, 845
DpnII	GATC	2 cut(s)	151, 843
DrdI	GACNNNNNNGTC	1 cut(s)	314
DseDI	GACNNNNNNGTC	1 cut(s)	314
Eam1104I	CTCTTC	1 cut(s)	543
EarI	CTCTTC	1 cut(s)	543
Eco147I	AGGCCT	1 cut(s)	127
EcoRI	GAATTC	1 cut(s)	727
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	8 cut(s)	8, 242, 313, 325, 345, 457, 521, 643
FalI	AAGNNNNNCTT	2 cut(s)	787, 819
FatI	CATG	8 cut(s)	4, 238, 309, 321, 341, 453, 517, 639
FauNDI	CATATG	1 cut(s)	496
Fnu4HI	GCNGC	3 cut(s)	40, 270, 273
FokI	GGATG	2 cut(s)	44, 677
Fsp4HI	GCNGC	3 cut(s)	40, 270, 273
FspBI	CTAG	3 cut(s)	18, 123, 699
GlaI	GCGC	1 cut(s)	346
GluI	GCNGC	3 cut(s)	40, 270, 273
HaeIII	GGCC	2 cut(s)	127, 657
HhaI	GCGC	1 cut(s)	347
Hin1II	CATG	8 cut(s)	8, 242, 313, 325, 345, 457, 521, 643
Hin6I	GCGC	1 cut(s)	345
HinP1I	GCGC	1 cut(s)	345
HindIII	AAGCTT	2 cut(s)	364, 467
HinfI	GANTC	7 cut(s)	58, 74, 500, 526, 559, 572, 632
HphI	GGTGA	1 cut(s)	568
Hpy188I	TCNGA	6 cut(s)	57, 202, 307, 505, 525, 811
Hpy188III	TCNNGA	7 cut(s)	131, 239, 278, 530, 640, 732, 841
HpyAV	CCTTC	1 cut(s)	283
HpyCH4III	ACNGT	3 cut(s)	248, 397, 818
HpyCH4V	TGCA	5 cut(s)	4, 39, 120, 543, 721
HpyF10VI	GCNNNNNNNGC	1 cut(s)	829
HpyF3I	CTNAG	5 cut(s)	10, 276, 304, 510, 810
Hsp92II	CATG	8 cut(s)	8, 242, 313, 325, 345, 457, 521, 643
HspAI	GCGC	1 cut(s)	345
KpnI	GGTACC	1 cut(s)	303
Kzo9I	GATC	2 cut(s)	151, 843
LmnI	GCTCC	1 cut(s)	828
LpnPI	CCDG	6 cut(s)	144, 263, 282, 561, 717, 814
Lsp1109I	GCAGC	3 cut(s)	51, 256, 259
MaeI	CTAG	3 cut(s)	18, 123, 699
MaeIII	GTNAC	1 cut(s)	490
MalI	GATC	2 cut(s)	153, 845
MboI	GATC	2 cut(s)	151, 843
MboII	GAAGA	5 cut(s)	42, 340, 560, 795, 798
MfeI	CAATTG	1 cut(s)	26
MlyI	GAGTC	2 cut(s)	581, 626
MmeI	TCCRAC	1 cut(s)	735
MnlI	CCTC	8 cut(s)	138, 313, 318, 451, 469, 592, 668, 805
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	405
MseI	TTAA	6 cut(s)	99, 111, 465, 618, 777, 877
MspA1I	CMGCKG	1 cut(s)	851
MunI	CAATTG	1 cut(s)	26
MwoI	GCNNNNNNNGC	1 cut(s)	829
NdeI	CATATG	1 cut(s)	496
NdeII	GATC	2 cut(s)	151, 843
NheI	GCTAGC	1 cut(s)	17
NlaIII	CATG	8 cut(s)	8, 242, 313, 325, 345, 457, 521, 643
NlaIV	GGNNCC	2 cut(s)	301, 833
NmuCI	GTSAC	1 cut(s)	490
NsiI	ATGCAT	1 cut(s)	6
PagI	TCATGA	2 cut(s)	238, 639
PceI	AGGCCT	1 cut(s)	127
PdmI	GAANNNNTTC	1 cut(s)	405
PfeI	GAWTC	5 cut(s)	58, 74, 500, 526, 559
PkrI	GCNGC	3 cut(s)	41, 271, 274
PleI	GAGTC	2 cut(s)	580, 626
PpsI	GAGTC	2 cut(s)	580, 626
PshBI	ATTAAT	1 cut(s)	618
PspN4I	GGNNCC	2 cut(s)	301, 833
PvuII	CAGCTG	1 cut(s)	851
RsaI	GTAC	3 cut(s)	301, 394, 603
RsaNI	GTAC	3 cut(s)	300, 393, 602
SaqAI	TTAA	6 cut(s)	99, 111, 465, 618, 777, 877
SatI	GCNGC	3 cut(s)	40, 270, 273
Sau3AI	GATC	2 cut(s)	151, 843
SchI	GAGTC	2 cut(s)	581, 626
SseBI	AGGCCT	1 cut(s)	127
SsiI	CCGC	1 cut(s)	259
SspI	AATATT	1 cut(s)	676
SspMI	CTAG	3 cut(s)	18, 123, 699
StuI	AGGCCT	1 cut(s)	127
TaaI	ACNGT	3 cut(s)	248, 397, 818
TaqI	TCGA	4 cut(s)	188, 474, 570, 842
TfiI	GAWTC	5 cut(s)	58, 74, 500, 526, 559
Tru1I	TTAA	6 cut(s)	99, 111, 465, 618, 777, 877
Tru9I	TTAA	6 cut(s)	99, 111, 465, 618, 777, 877
TscAI	CASTG	3 cut(s)	416, 514, 833
TseFI	GTSAC	1 cut(s)	490
TseI	GCWGC	3 cut(s)	39, 269, 272
Tsp45I	GTSAC	1 cut(s)	490
TspDTI	ATGAA	5 cut(s)	227, 255, 266, 729, 854
TspRI	CASTG	3 cut(s)	416, 514, 833
VspI	ATTAAT	1 cut(s)	618
XapI	RAATTY	4 cut(s)	171, 232, 479, 727
XmnI	GAANNNNTTC	1 cut(s)	405
XspI	CTAG	3 cut(s)	18, 123, 699
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.