Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0016291

Physical Location & Seq

Genomic Coordinates Forward (+)

51373290 .. 51382308

Gene Structure 9019 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00256940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGTTTCCGGTGAGTCCGGCGGTGTATGACGGTGGGATTTCCGGCGGGTGTTACAGCTACCCACCACCTCCTCAATATCCAACACAACCTAGCTACCCACCACCTCCTTCTCAATTTCCATCGCAACCAAGCTACCCACCACCACCTTCCCAAACAATCATCAATGGGACTAAAGCTTACCTTCAGCAATCACGGGCATGGATTCCATCTTCTGCACTGCAAACTCGATCACTAGAATATAGCCTTCGTTACTTACCAACTTGCTTCTCAATGGACAGAACTTATGCAATTAACGTGGTAGCAACAGGGACCAATTCATCTGTATATATAGGAGACTTAAACCTCAAGAAGCTTCTCATTAAAGCAATCCATATCGTTGGCTCGGTGTATCGATTTTGCAAGTTGGGTCATTTTGATAAGGCAAAAGGGATACTATATGATGTAATTAAGCATTCATTTGACTCCACCATGGTCACCGATAATGGCTTCTTGAATGCAGCTTTTGATGGGGTATCGTGTGATGTGATTAAGCTCGTAATCATAGTTCCCGGAACTATAAAGTTTGGAGAAGAAAATGGGGCTCTTGATGATAGGATTCGGATAATGAACGGGAATGCTTTACTCTGCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

210

Amino Acids

23.0

Weight (kDa)

8.53

Isoelectric Point (pI)

49.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016291)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g30941 FvH4_5g02451 FvH4_5g17361 FvH4_5g17362
rosa_chinensis	RchiOBHm_Chr1g0383661 RchiOBHm_Chr4g0407001 RchiOBHm_Chr5g0029671
rosa_multiflora	Rmu_sc0000665.1_g000017 Rmu_sc0011574.1_g000005 Rmu_sc0011574.1_g000006 Rmu_ssc0000135.1_g000005
rosa_roxburghii	Rroxscaffold_3G00256940 Rroxscaffold_4G00289440 Rroxscaffold_7G00179290
rosa_rugosa	Rorug04G0076400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	20, 45
AcuI	CTGAAG	1 cut(s)	167
AgsI	TTSAA	1 cut(s)	493
AluBI	AGCT	7 cut(s)	57, 93, 132, 176, 352, 500, 532
AluI	AGCT	7 cut(s)	57, 93, 132, 176, 352, 500, 532
Alw26I	GTCTC	1 cut(s)	327
ApeKI	GCWGC	1 cut(s)	497
AspS9I	GGNCC	1 cut(s)	309
AsuC2I	CCSGG	1 cut(s)	549
AsuHPI	GGTGA	2 cut(s)	22, 466
AvaII	GGWCC	1 cut(s)	309
BanII	GRGCYC	1 cut(s)	583
BbvI	GCAGC	1 cut(s)	509
BccI	CCATC	3 cut(s)	127, 214, 500
BciVI	GTATCC	1 cut(s)	423
BcnI	CCSGG	1 cut(s)	549
BcoDI	GTCTC	1 cut(s)	327
BfaI	CTAG	2 cut(s)	90, 233
BfuI	GTATCC	1 cut(s)	423
BisI	GCNGC	1 cut(s)	498
BlsI	GCNGC	1 cut(s)	499
Bme1390I	CCNGG	1 cut(s)	549
Bme18I	GGWCC	1 cut(s)	309
BmgT120I	GGNCC	1 cut(s)	309
BmiI	GGNNCC	1 cut(s)	310
BmrFI	CCNGG	1 cut(s)	549
BpuEI	CTTGAG	1 cut(s)	329
BpuMI	CCSGG	1 cut(s)	549
Bsa29I	ATCGAT	1 cut(s)	391
BsaJI	CCNNGG	1 cut(s)	468
BsaWI	WCCGGW	1 cut(s)	7
BseCI	ATCGAT	1 cut(s)	391
BseDI	CCNNGG	1 cut(s)	468
BseRI	GAGGAG	1 cut(s)	60
BseXI	GCAGC	1 cut(s)	509
BsgI	GTGCAG	1 cut(s)	198
BshVI	ATCGAT	1 cut(s)	391
BsiSI	CCGG	4 cut(s)	8, 17, 42, 549
BslFI	GGGAC	2 cut(s)	181, 322
BsmAI	GTCTC	1 cut(s)	327
BsmFI	GGGAC	2 cut(s)	181, 322
BsmI	GAATGC	3 cut(s)	451, 499, 619
Bsp1286I	GDGCHC	1 cut(s)	583
Bsp143I	GATC	1 cut(s)	227
Bsp19I	CCATGG	1 cut(s)	468
BspACI	CCGC	2 cut(s)	20, 45
BspDI	ATCGAT	1 cut(s)	391
BspLI	GGNNCC	1 cut(s)	310
BssECI	CCNNGG	1 cut(s)	468
BssMI	GATC	1 cut(s)	227
BssT1I	CCWWGG	1 cut(s)	468
Bst4CI	ACNGT	1 cut(s)	32
BstDSI	CCRYGG	1 cut(s)	468
BstEII	GGTNACC	1 cut(s)	472
BstKTI	GATC	1 cut(s)	230
BstMAI	GTCTC	1 cut(s)	327
BstMBI	GATC	1 cut(s)	227
BstNSI	RCATGY	1 cut(s)	631
BstPI	GGTNACC	1 cut(s)	472
BstSCI	CCNGG	1 cut(s)	547
BstV1I	GCAGC	1 cut(s)	509
BstXI	CCANNNNNNTGG	1 cut(s)	377
Bsu15I	ATCGAT	1 cut(s)	391
BsuI	GTATCC	1 cut(s)	423
BsuTUI	ATCGAT	1 cut(s)	391
BtgI	CCRYGG	1 cut(s)	468
BtgZI	GCGATG	1 cut(s)	105
BtsI	GCAGTG	1 cut(s)	215
BtsIMutI	CAGTG	1 cut(s)	215
Cfr13I	GGNCC	1 cut(s)	309
ClaI	ATCGAT	1 cut(s)	391
CspCI	CAANNNNNGTGG	2 cut(s)	276, 311
CviAII	CATG	3 cut(s)	198, 469, 628
DpnI	GATC	1 cut(s)	229
DpnII	GATC	1 cut(s)	227
Eco130I	CCWWGG	1 cut(s)	468
Eco24I	GRGCYC	1 cut(s)	583
Eco47I	GGWCC	1 cut(s)	309
Eco57I	CTGAAG	1 cut(s)	167
Eco91I	GGTNACC	1 cut(s)	472
EcoO65I	GGTNACC	1 cut(s)	472
EcoT14I	CCWWGG	1 cut(s)	468
EcoT38I	GRGCYC	1 cut(s)	583
ErhI	CCWWGG	1 cut(s)	468
FaeI	CATG	3 cut(s)	201, 472, 631
FalI	AAGNNNNNCTT	2 cut(s)	165, 197
FaqI	GGGAC	2 cut(s)	181, 322
FatI	CATG	3 cut(s)	197, 468, 627
FauI	CCCGC	1 cut(s)	38
Fnu4HI	GCNGC	1 cut(s)	498
FriOI	GRGCYC	1 cut(s)	583
Fsp4HI	GCNGC	1 cut(s)	498
FspBI	CTAG	2 cut(s)	90, 233
GluI	GCNGC	1 cut(s)	498
HapII	CCGG	4 cut(s)	8, 17, 42, 549
Hin1II	CATG	3 cut(s)	201, 472, 631
HindIII	AAGCTT	2 cut(s)	174, 350
HinfI	GANTC	4 cut(s)	13, 202, 461, 595
HpaII	CCGG	4 cut(s)	8, 17, 42, 549
HphI	GGTGA	2 cut(s)	22, 466
Hpy188I	TCNGA	1 cut(s)	600
Hpy188III	TCNNGA	3 cut(s)	346, 490, 584
HpyAV	CCTTC	4 cut(s)	117, 156, 191, 254
HpyCH4III	ACNGT	1 cut(s)	32
HpyCH4IV	ACGT	1 cut(s)	294
HpyCH4V	TGCA	6 cut(s)	215, 220, 287, 399, 497, 627
HpySE526I	ACGT	1 cut(s)	294
Hsp92II	CATG	3 cut(s)	201, 472, 631
Kzo9I	GATC	1 cut(s)	227
LpnPI	CCDG	5 cut(s)	21, 30, 55, 291, 562
Lsp1109I	GCAGC	1 cut(s)	509
MaeI	CTAG	2 cut(s)	90, 233
MaeII	ACGT	1 cut(s)	294
MaeIII	GTNAC	3 cut(s)	50, 248, 472
MalI	GATC	1 cut(s)	229
MboI	GATC	1 cut(s)	227
MboII	GAAGA	2 cut(s)	201, 581
MhlI	GDGCHC	1 cut(s)	583
MluCI	AATT	4 cut(s)	113, 288, 313, 444
MlyI	GAGTC	2 cut(s)	22, 455
MmeI	TCCRAC	1 cut(s)	104
MnlI	CCTC	4 cut(s)	78, 81, 114, 353
MseI	TTAA	5 cut(s)	291, 338, 360, 447, 528
MslI	CAYNNNNRTG	1 cut(s)	196
MspI	CCGG	4 cut(s)	8, 17, 42, 549
MspR9I	CCNGG	1 cut(s)	549
Mva1269I	GAATGC	3 cut(s)	451, 499, 619
NciI	CCSGG	1 cut(s)	549
NcoI	CCATGG	1 cut(s)	468
NdeII	GATC	1 cut(s)	227
NlaIII	CATG	3 cut(s)	201, 472, 631
NlaIV	GGNNCC	1 cut(s)	310
NmuCI	GTSAC	1 cut(s)	472
NspI	RCATGY	1 cut(s)	631
PctI	GAATGC	3 cut(s)	451, 499, 619
PfeI	GAWTC	2 cut(s)	202, 595
PfoI	TCCNGGA	1 cut(s)	547
PkrI	GCNGC	1 cut(s)	499
PleI	GAGTC	2 cut(s)	21, 455
PpsI	GAGTC	2 cut(s)	21, 455
PspEI	GGTNACC	1 cut(s)	472
PspN4I	GGNNCC	1 cut(s)	310
PspPI	GGNCC	1 cut(s)	309
PsrI	GAACNNNNNNTAC	2 cut(s)	528, 560
RseI	CAYNNNNRTG	1 cut(s)	196
SaqAI	TTAA	5 cut(s)	291, 338, 360, 447, 528
SatI	GCNGC	1 cut(s)	498
Sau3AI	GATC	1 cut(s)	227
Sau96I	GGNCC	1 cut(s)	309
SchI	GAGTC	2 cut(s)	22, 455
ScrFI	CCNGG	1 cut(s)	549
SduI	GDGCHC	1 cut(s)	583
SinI	GGWCC	1 cut(s)	309
SmiMI	CAYNNNNRTG	1 cut(s)	196
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
Sse9I	AATT	4 cut(s)	113, 288, 313, 444
SsiI	CCGC	2 cut(s)	20, 45
SspMI	CTAG	2 cut(s)	90, 233
StyD4I	CCNGG	1 cut(s)	547
StyI	CCWWGG	1 cut(s)	468
TaaI	ACNGT	1 cut(s)	32
TaiI	ACGT	1 cut(s)	297
TaqI	TCGA	2 cut(s)	226, 391
TasI	AATT	4 cut(s)	113, 288, 313, 444
TfiI	GAWTC	2 cut(s)	202, 595
Tru1I	TTAA	5 cut(s)	291, 338, 360, 447, 528
Tru9I	TTAA	5 cut(s)	291, 338, 360, 447, 528
TscAI	CASTG	1 cut(s)	222
TseFI	GTSAC	1 cut(s)	472
TseI	GCWGC	1 cut(s)	497
Tsp45I	GTSAC	1 cut(s)	472
TspDTI	ATGAA	3 cut(s)	306, 444, 620
TspRI	CASTG	1 cut(s)	222
VpaK11BI	GGWCC	1 cut(s)	309
XceI	RCATGY	1 cut(s)	631
XspI	CTAG	2 cut(s)	90, 233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.