Rmu_sc0000665.1_g000017

Serine racemase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000665.1
OG0016291
Physical Location & Seq
Forward (+)
83850 .. 84976
1127 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000665.1_g000017.1.cds

Sequence Viewer

Length: 1071 bp
atgtcatttctgggcttggatcctggggatcctaacaactggtatcagagcccgcaattgggccggtttccggtcaatccggcgatgtacggtggtggaatatccggcgggggttacaacactcattcttatcaccctcacggtagccctagctacccaccaccttctcaatatccaacacaacctagctacccaccacctcctcctcaatttccattgcaaccaagctacccaccactaccttcccaaataatcatcaatgggtatgtttttcctcaccaatttccacacctttctgcaaatcacgctcagttgaacatggctacacgttcgccgtacacttccccatattctcaaaaccaatggtactcaagtactgagctcttcaccaccacaccccaatcacctctaattccaattcaccctcatccaagtgaaatttatcaccattatcgacctacccagcctcatttcattcccacaaagcagtctattcctccaccgctgttagttcctactgcagaacacttggaacatccccaattttcaattccagctgtggttaatgaagaacctttttcaatttctctcaaacttgagatgggtcacagggtagaaaccaacatttctactaagcgagtggaatcagtagcccaaccagtggagtctcaaattcgtgatgagataaacaagcgttcgttcaagtacgcttgggtgcttcacaagctccaggctgagcgtaaaaggggtactaccattaacattgctctctggaaatctgatactaccaagtgcaataactcttgcactattgatgatgctctggtatctaatgggtatttcgagtatgcccagaaggtgtttgatgaaatgactcttagagttgttcatgtgagcactaatggatttgatgtgtttttcaaatgtgatttccaaaattgtggtgctttcaaattcagaggagcttgcaatcccgtgttttcaattgatgatgatcaagttgctaaaggggttgaaacacatagcagcagtaaccatgatgcatcattgtctttcgcggcaaaactctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000287 GO:0002237 GO:0003674 GO:0003824 GO:0003941 GO:0005488 GO:0005509 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006090 GO:0006520 GO:0006563 GO:0006564 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0008721 GO:0009058 GO:0009069 GO:0009070 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010033 GO:0016043 GO:0016053 GO:0016594 GO:0016597 GO:0016829 GO:0016840 GO:0016841 GO:0016853 GO:0016854 GO:0016855 GO:0017076 GO:0017144 GO:0018114 GO:0019752 GO:0019842 GO:0019904 GO:0022607 GO:0030165 GO:0030170 GO:0030378 GO:0030554 GO:0031406 GO:0032496 GO:0032553 GO:0032555 GO:0032559 GO:0032787 GO:0033993 GO:0035639 GO:0036094 GO:0036361 GO:0036477 GO:0042165 GO:0042221 GO:0042802 GO:0042803 GO:0042866 GO:0043025 GO:0043167 GO:0043168 GO:0043169 GO:0043177 GO:0043207 GO:0043436 GO:0043621 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044297 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046416 GO:0046437 GO:0046872 GO:0046983 GO:0047661 GO:0048037 GO:0050662 GO:0050896 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0051704 GO:0051707 GO:0065003 GO:0070178 GO:0070179 GO:0070279 GO:0071704 GO:0071840 GO:0072330 GO:0097159 GO:0097367 GO:0097458 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko00260 ko01100 map00260 map01100
Pfam Domains
Protein Families
PALP

Protein Analysis

356

Amino Acids

39.96

Weight (kDa)

6.64

Isoelectric Point (pI)

60.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 661
AccII CGCG 1 cut(s) 1058
AciI CCGC 4 cut(s) 53, 108, 503, 1058
AclWI GGATC 4 cut(s) 14, 23, 27, 36
AcsI RAATTY 3 cut(s) 438, 672, 953
AfaI GTAC 6 cut(s) 89, 338, 368, 376, 707, 751
AfiI CCNNNNNNNGG 4 cut(s) 58, 59, 70, 661
AflIII ACRYGT 1 cut(s) 326
AgsI TTSAA 8 cut(s) 316, 549, 582, 703, 922, 952, 984, 1016
AjnI CCWGG 2 cut(s) 22, 729
AjuI GAANNNNNNNTTGG 2 cut(s) 534, 566
AluBI AGCT 7 cut(s) 153, 189, 228, 382, 557, 727, 965
AluI AGCT 7 cut(s) 153, 189, 228, 382, 557, 727, 965
Alw21I GWGCWC 2 cut(s) 384, 899
Alw26I GTCTC 1 cut(s) 672
AlwI GGATC 4 cut(s) 14, 23, 27, 36
AoxI GGCC 1 cut(s) 61
ApeKI GCWGC 1 cut(s) 1026
ApoI RAATTY 3 cut(s) 438, 672, 953
AspS9I GGNCC 1 cut(s) 61
AsuHPI GGTGA 6 cut(s) 125, 269, 379, 396, 413, 437
BaeI ACNNNNGTAYC 2 cut(s) 358, 391
BamHI GGATCC 2 cut(s) 19, 28
BanII GRGCYC 2 cut(s) 53, 384
Bbv12I GWGCWC 2 cut(s) 384, 899
BbvI GCAGC 1 cut(s) 1038
BccI CCATC 1 cut(s) 595
BceAI ACGGC 1 cut(s) 319
BciT130I CCWGG 2 cut(s) 24, 731
BclI TGATCA 1 cut(s) 994
BcoDI GTCTC 1 cut(s) 672
BfaI CTAG 3 cut(s) 150, 186, 1069
BfmI CTRYAG 1 cut(s) 519
BisI GCNGC 2 cut(s) 1027, 1059
BlpI GCTNAGC 1 cut(s) 735
BlsI GCNGC 2 cut(s) 1028, 1060
BmcAI AGTACT 1 cut(s) 376
Bme1390I CCNGG 2 cut(s) 24, 731
BmgT120I GGNCC 1 cut(s) 61
BmiI GGNNCC 2 cut(s) 21, 30
BmrFI CCNGG 2 cut(s) 24, 731
BmsI GCATC 3 cut(s) 808, 1030, 1052
BpmI CTGGAG 1 cut(s) 713
Bpu1102I GCTNAGC 1 cut(s) 735
BpuEI CTTGAG 2 cut(s) 355, 617
BsaBI GATNNNNATC 1 cut(s) 993
BsaJI CCNNGG 1 cut(s) 23
BsaWI WCCGGW 1 cut(s) 70
Bsc4I CCNNNNNNNGG 4 cut(s) 58, 59, 70, 661
Bse118I RCCGGY 1 cut(s) 63
Bse1I ACTGG 2 cut(s) 44, 659
Bse3DI GCAATG 2 cut(s) 215, 762
Bse8I GATNNNNATC 1 cut(s) 993
BseBI CCWGG 2 cut(s) 24, 731
BseDI CCNNGG 1 cut(s) 23
BseGI GGATG 2 cut(s) 427, 535
BseJI GATNNNNATC 1 cut(s) 993
BseLI CCNNNNNNNGG 4 cut(s) 58, 59, 70, 661
BseMI GCAATG 2 cut(s) 215, 762
BseMII CTCAG 3 cut(s) 323, 369, 726
BseNI ACTGG 2 cut(s) 44, 659
BseRI GAGGAG 3 cut(s) 192, 195, 975
BseXI GCAGC 1 cut(s) 1038
BseYI CCCAGC 1 cut(s) 462
Bsh1236I CGCG 1 cut(s) 1058
BshFI GGCC 1 cut(s) 63
BsiHKAI GWGCWC 2 cut(s) 384, 899
BsiSI CCGG 4 cut(s) 64, 71, 80, 105
BslI CCNNNNNNNGG 4 cut(s) 58, 59, 70, 661
BsmAI GTCTC 1 cut(s) 672
BsnI GGCC 1 cut(s) 63
Bsp1286I GDGCHC 3 cut(s) 53, 384, 899
Bsp143I GATC 3 cut(s) 19, 28, 994
Bsp1720I GCTNAGC 1 cut(s) 735
BspACI CCGC 4 cut(s) 53, 108, 503, 1058
BspANI GGCC 1 cut(s) 63
BspCNI CTCAG 3 cut(s) 322, 370, 727
BspFNI CGCG 1 cut(s) 1058
BspLI GGNNCC 2 cut(s) 21, 30
BspMAI CTGCAG 1 cut(s) 523
BspPI GGATC 4 cut(s) 14, 23, 27, 36
BspQI GCTCTTC 1 cut(s) 389
BsrDI GCAATG 2 cut(s) 215, 762
BsrFI RCCGGY 1 cut(s) 63
BsrI ACTGG 2 cut(s) 44, 659
BssAI RCCGGY 1 cut(s) 63
BssECI CCNNGG 1 cut(s) 23
BssMI GATC 3 cut(s) 19, 28, 994
Bst2UI CCWGG 2 cut(s) 24, 731
Bst4CI ACNGT 2 cut(s) 92, 143
Bst6I CTCTTC 1 cut(s) 389
BstC8I GCNNGC 2 cut(s) 53, 967
BstDEI CTNAG 5 cut(s) 309, 378, 633, 735, 878
BstF5I GGATG 2 cut(s) 427, 535
BstFNI CGCG 1 cut(s) 1058
BstKTI GATC 3 cut(s) 22, 31, 997
BstMAI GTCTC 1 cut(s) 672
BstMBI GATC 3 cut(s) 19, 28, 994
BstMWI GCNNNNNNNGC 2 cut(s) 305, 724
BstNI CCWGG 2 cut(s) 24, 731
BstSCI CCNGG 2 cut(s) 22, 729
BstSFI CTRYAG 1 cut(s) 519
BstUI CGCG 1 cut(s) 1058
BstV1I GCAGC 1 cut(s) 1038
BstX2I RGATCY 2 cut(s) 19, 28
BstXI CCANNNNNNTGG 1 cut(s) 941
BstYI RGATCY 2 cut(s) 19, 28
BsuRI GGCC 1 cut(s) 63
BtgZI GCGATG 1 cut(s) 98
BtsCI GGATG 2 cut(s) 427, 535
BtsIMutI CAGTG 1 cut(s) 666
Cac8I GCNNGC 2 cut(s) 53, 967
Cfr10I RCCGGY 1 cut(s) 63
Cfr13I GGNCC 1 cut(s) 61
Csp6I GTAC 6 cut(s) 88, 337, 367, 375, 706, 750
CviAII CATG 3 cut(s) 319, 890, 1037
CviQI GTAC 6 cut(s) 88, 337, 367, 375, 706, 750
DdeI CTNAG 5 cut(s) 309, 378, 633, 735, 878
DpnI GATC 3 cut(s) 21, 30, 996
DpnII GATC 3 cut(s) 19, 28, 994
Eam1104I CTCTTC 1 cut(s) 389
EarI CTCTTC 1 cut(s) 389
Ecl136II GAGCTC 1 cut(s) 382
Eco24I GRGCYC 2 cut(s) 53, 384
Eco53kI GAGCTC 1 cut(s) 382
EcoICRI GAGCTC 1 cut(s) 382
EcoRII CCWGG 2 cut(s) 22, 729
EcoT22I ATGCAT 1 cut(s) 1045
EcoT38I GRGCYC 2 cut(s) 53, 384
FaeI CATG 3 cut(s) 322, 893, 1040
FaiI YATR 7 cut(s) 267, 320, 349, 849, 891, 1023, 1038
FatI CATG 3 cut(s) 318, 889, 1036
FauI CCCGC 2 cut(s) 60, 101
FbaI TGATCA 1 cut(s) 994
Fnu4HI GCNGC 2 cut(s) 1027, 1059
FokI GGATG 2 cut(s) 414, 522
FriOI GRGCYC 2 cut(s) 53, 384
Fsp4HI GCNGC 2 cut(s) 1027, 1059
FspBI CTAG 3 cut(s) 150, 186, 1069
GluI GCNGC 2 cut(s) 1027, 1059
GsaI CCCAGC 1 cut(s) 466
GsuI CTGGAG 1 cut(s) 713
HaeIII GGCC 1 cut(s) 63
HapII CCGG 4 cut(s) 64, 71, 80, 105
Hin1II CATG 3 cut(s) 322, 893, 1040
HinfI GANTC 3 cut(s) 644, 665, 874
HpaII CCGG 4 cut(s) 64, 71, 80, 105
HphI GGTGA 6 cut(s) 125, 269, 379, 396, 413, 437
Hpy166II GTNNAC 1 cut(s) 339
Hpy188I TCNGA 3 cut(s) 48, 781, 959
Hpy188III TCNNGA 2 cut(s) 677, 772
Hpy8I GTNNAC 1 cut(s) 339
HpyAV CCTTC 3 cut(s) 174, 252, 850
HpyCH4III ACNGT 2 cut(s) 92, 143
HpyCH4IV ACGT 1 cut(s) 328
HpyCH4V TGCA 7 cut(s) 220, 299, 521, 795, 807, 969, 1043
HpyF10VI GCNNNNNNNGC 2 cut(s) 305, 724
HpyF3I CTNAG 5 cut(s) 309, 378, 633, 735, 878
HpySE526I ACGT 1 cut(s) 328
Hsp92II CATG 3 cut(s) 322, 893, 1040
Ksp22I TGATCA 1 cut(s) 994
Kzo9I GATC 3 cut(s) 19, 28, 994
LguI GCTCTTC 1 cut(s) 389
LmnI GCTCC 2 cut(s) 732, 962
Lsp1109I GCAGC 1 cut(s) 1038
LweI GCATC 3 cut(s) 808, 1030, 1052
MaeI CTAG 3 cut(s) 150, 186, 1069
MaeII ACGT 1 cut(s) 328
MaeIII GTNAC 3 cut(s) 113, 605, 1031
MalI GATC 3 cut(s) 21, 30, 996
MboI GATC 3 cut(s) 19, 28, 994
MboII GAAGA 2 cut(s) 376, 581
MfeI CAATTG 2 cut(s) 56, 984
MflI RGATCY 2 cut(s) 19, 28
MhlI GDGCHC 3 cut(s) 53, 384, 899
MlyI GAGTC 2 cut(s) 674, 868
MmeI TCCRAC 1 cut(s) 200
Mph1103I ATGCAT 1 cut(s) 1045
MseI TTAA 2 cut(s) 564, 759
MslI CAYNNNNRTG 1 cut(s) 432
MspA1I CMGCKG 2 cut(s) 505, 557
MspI CCGG 4 cut(s) 64, 71, 80, 105
MspR9I CCNGG 2 cut(s) 24, 731
MunI CAATTG 2 cut(s) 56, 984
MvaI CCWGG 2 cut(s) 24, 731
MvnI CGCG 1 cut(s) 1058
MwoI GCNNNNNNNGC 2 cut(s) 305, 724
NdeII GATC 3 cut(s) 19, 28, 994
NlaIII CATG 3 cut(s) 322, 893, 1040
NlaIV GGNNCC 2 cut(s) 21, 30
NmuCI GTSAC 1 cut(s) 605
NsiI ATGCAT 1 cut(s) 1045
PciSI GCTCTTC 1 cut(s) 389
PfeI GAWTC 1 cut(s) 644
PflMI CCANNNNNTGG 1 cut(s) 661
PkrI GCNGC 2 cut(s) 1028, 1060
PleI GAGTC 2 cut(s) 673, 868
PpsI GAGTC 2 cut(s) 673, 868
Psp124BI GAGCTC 1 cut(s) 384
Psp6I CCWGG 2 cut(s) 22, 729
PspFI CCCAGC 1 cut(s) 462
PspGI CCWGG 2 cut(s) 22, 729
PspN4I GGNNCC 2 cut(s) 21, 30
PspPI GGNCC 1 cut(s) 61
PstI CTGCAG 1 cut(s) 523
PsuI RGATCY 2 cut(s) 19, 28
PvuII CAGCTG 1 cut(s) 557
RsaI GTAC 6 cut(s) 89, 338, 368, 376, 707, 751
RsaNI GTAC 6 cut(s) 88, 337, 367, 375, 706, 750
RseI CAYNNNNRTG 1 cut(s) 432
SacI GAGCTC 1 cut(s) 384
SapI GCTCTTC 1 cut(s) 389
SaqAI TTAA 2 cut(s) 564, 759
SatI GCNGC 2 cut(s) 1027, 1059
Sau3AI GATC 3 cut(s) 19, 28, 994
Sau96I GGNCC 1 cut(s) 61
ScaI AGTACT 1 cut(s) 376
SchI GAGTC 2 cut(s) 674, 868
ScrFI CCNGG 2 cut(s) 24, 731
SduI GDGCHC 3 cut(s) 53, 384, 899
SfaNI GCATC 3 cut(s) 808, 1030, 1052
SfcI CTRYAG 1 cut(s) 519
SmiMI CAYNNNNRTG 1 cut(s) 432
SmlI CTYRAG 2 cut(s) 370, 596
SmoI CTYRAG 2 cut(s) 370, 596
SsiI CCGC 4 cut(s) 53, 108, 503, 1058
SspMI CTAG 3 cut(s) 150, 186, 1069
SstI GAGCTC 1 cut(s) 384
StyD4I CCNGG 2 cut(s) 22, 729
TaaI ACNGT 2 cut(s) 92, 143
TaiI ACGT 1 cut(s) 331
TaqI TCGA 2 cut(s) 454, 843
TatI WGTACW 1 cut(s) 374
TauI GCSGC 1 cut(s) 1061
TfiI GAWTC 1 cut(s) 644
Tru1I TTAA 2 cut(s) 564, 759
Tru9I TTAA 2 cut(s) 564, 759
TscAI CASTG 1 cut(s) 666
TseFI GTSAC 1 cut(s) 605
TseI GCWGC 1 cut(s) 1026
Tsp45I GTSAC 1 cut(s) 605
TspDTI ATGAA 4 cut(s) 463, 582, 878, 882
TspRI CASTG 1 cut(s) 666
Van91I CCANNNNNTGG 1 cut(s) 661
XapI RAATTY 3 cut(s) 438, 672, 953
XspI CTAG 3 cut(s) 150, 186, 1069
ZrmI AGTACT 1 cut(s) 376
Zsp2I ATGCAT 1 cut(s) 1045
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.