Rmu_ssc0000135.1_g000005

Serine racemase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000135.1
OG0016291
Physical Location & Seq
Forward (+)
54906 .. 56207
1302 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000135.1_g000005.1.cds

Sequence Viewer

Length: 1002 bp
atgtcatttctaggcttggatcctggggatcctaacaactggtatcagagcccgcaactgggccggtttccggtcagtccggaggtgttcggtggtggaatctccggcggcggttacagcactcattcttatcaccctcacgttagccctaggtacccaccaccttctctatatcgaacacaacctagctacccaccacctcctcctcaatttccatcgcaaccaagctacccaccaccaccttcccaaacaatcatcaatggcctcattttgattcccacaaagcagtctattcctccaccgctgttagttcctactgcagaacacttggaacatccccaattttcaattccagccgtggttaatgaagaacctttttcaatttctctcaaacttgagatgggtcacagggtagaaaccaacatttctactaagcgagtgggtttggggcgtgaagaagaggtggagtttcaatttcatgatgctgagcgtaaaaggggtactaccattaacattgctctctggaaatctgatactagcaagtgtaataactcttgcactgttgatgatgctctggtatctaatgggtatttcgagtatgcccagaaggtgtttgatgaaatgactcttagagttgttcctgtgagcactaatggatttgatgtgattttcaaatgtgatttccaaaacggtggtgctttcaaattcagaggagcttgcaatcccgtgttttcaattgatgatgatcaagttgctaaaggggttgaaacacatagcagcagtaaccatgatgcatcattgtctttcgcggcaaaactctggggtattcctacaagtgggttcaaggaaactgtgaatttgacgtatgattctattattgagcagcagattacgatgaaagatgcattctacaaacagtatggattttgcaagttgggtcattttgataaggcaaaagggatactatatgacgtaattaagtattgtgtaaaccccctttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000287 GO:0002237 GO:0003674 GO:0003824 GO:0003941 GO:0005488 GO:0005509 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006090 GO:0006520 GO:0006563 GO:0006564 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0008721 GO:0009058 GO:0009069 GO:0009070 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010033 GO:0016043 GO:0016053 GO:0016594 GO:0016597 GO:0016829 GO:0016840 GO:0016841 GO:0016853 GO:0016854 GO:0016855 GO:0017076 GO:0017144 GO:0018114 GO:0019752 GO:0019842 GO:0019904 GO:0022607 GO:0030165 GO:0030170 GO:0030378 GO:0030554 GO:0031406 GO:0032496 GO:0032553 GO:0032555 GO:0032559 GO:0032787 GO:0033993 GO:0035639 GO:0036094 GO:0036361 GO:0036477 GO:0042165 GO:0042221 GO:0042802 GO:0042803 GO:0042866 GO:0043025 GO:0043167 GO:0043168 GO:0043169 GO:0043177 GO:0043207 GO:0043436 GO:0043621 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044297 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046416 GO:0046437 GO:0046872 GO:0046983 GO:0047661 GO:0048037 GO:0050662 GO:0050896 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0051704 GO:0051707 GO:0065003 GO:0070178 GO:0070179 GO:0070279 GO:0071704 GO:0071840 GO:0072330 GO:0097159 GO:0097367 GO:0097458 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko00260 ko01100 map00260 map01100
Pfam Domains
Protein Families
PALP

Protein Analysis

333

Amino Acids

36.98

Weight (kDa)

5.93

Isoelectric Point (pI)

49.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 153
AccB1I GGYRCC 1 cut(s) 153
AccII CGCG 1 cut(s) 809
AccIII TCCGGA 1 cut(s) 79
AciI CCGC 5 cut(s) 53, 108, 111, 302, 809
AclWI GGATC 4 cut(s) 14, 23, 27, 36
AcsI RAATTY 2 cut(s) 704, 856
AfaI GTAC 2 cut(s) 155, 502
AfiI CCNNNNNNNGG 4 cut(s) 58, 59, 70, 836
AgsI TTSAA 8 cut(s) 348, 381, 473, 673, 703, 735, 767, 844
AjnI CCWGG 1 cut(s) 22
AjuI GAANNNNNNNTTGG 2 cut(s) 333, 365
AluBI AGCT 3 cut(s) 189, 228, 716
AluI AGCT 3 cut(s) 189, 228, 716
Alw21I GWGCWC 1 cut(s) 650
AlwI GGATC 4 cut(s) 14, 23, 27, 36
Aor13HI TCCGGA 1 cut(s) 79
AoxI GGCC 2 cut(s) 61, 262
ApeKI GCWGC 2 cut(s) 777, 883
ApoI RAATTY 2 cut(s) 704, 856
Asp718I GGTACC 1 cut(s) 153
AspA2I CCTAGG 1 cut(s) 149
AspS9I GGNCC 1 cut(s) 61
AsuHPI GGTGA 1 cut(s) 125
AvrII CCTAGG 1 cut(s) 149
BamHI GGATCC 2 cut(s) 19, 28
BanI GGYRCC 1 cut(s) 153
BanII GRGCYC 1 cut(s) 53
Bbv12I GWGCWC 1 cut(s) 650
BbvI GCAGC 2 cut(s) 789, 895
BccI CCATC 2 cut(s) 223, 394
BceAI ACGGC 1 cut(s) 341
BciT130I CCWGG 1 cut(s) 24
BciVI GTATCC 1 cut(s) 954
BclI TGATCA 1 cut(s) 745
BfaI CTAG 4 cut(s) 11, 150, 186, 537
BfmI CTRYAG 1 cut(s) 318
BfuI GTATCC 1 cut(s) 954
BisI GCNGC 4 cut(s) 109, 778, 810, 884
BlnI CCTAGG 1 cut(s) 149
BlpI GCTNAGC 1 cut(s) 486
BlsI GCNGC 4 cut(s) 110, 779, 811, 885
Bme1390I CCNGG 1 cut(s) 24
BmgT120I GGNCC 1 cut(s) 61
BmiI GGNNCC 3 cut(s) 21, 30, 155
BmrFI CCNGG 1 cut(s) 24
BmrI ACTGGG 1 cut(s) 68
BmsI GCATC 5 cut(s) 472, 559, 781, 803, 892
BmuI ACTGGG 1 cut(s) 68
Bpu1102I GCTNAGC 1 cut(s) 486
BpuEI CTTGAG 1 cut(s) 416
BsaBI GATNNNNATC 1 cut(s) 744
BsaJI CCNNGG 3 cut(s) 23, 149, 357
BsaWI WCCGGW 2 cut(s) 70, 79
Bsc4I CCNNNNNNNGG 4 cut(s) 58, 59, 70, 836
Bse118I RCCGGY 1 cut(s) 63
Bse1I ACTGG 2 cut(s) 44, 63
Bse3DI GCAATG 1 cut(s) 513
Bse8I GATNNNNATC 1 cut(s) 744
BseAI TCCGGA 1 cut(s) 79
BseBI CCWGG 1 cut(s) 24
BseDI CCNNGG 3 cut(s) 23, 149, 357
BseGI GGATG 1 cut(s) 334
BseJI GATNNNNATC 1 cut(s) 744
BseLI CCNNNNNNNGG 4 cut(s) 58, 59, 70, 836
BseMI GCAATG 1 cut(s) 513
BseMII CTCAG 1 cut(s) 477
BseNI ACTGG 2 cut(s) 44, 63
BseRI GAGGAG 3 cut(s) 192, 195, 726
BseXI GCAGC 2 cut(s) 789, 895
Bsh1236I CGCG 1 cut(s) 809
BshFI GGCC 2 cut(s) 63, 264
BshNI GGYRCC 1 cut(s) 153
BsiHKAI GWGCWC 1 cut(s) 650
BsiSI CCGG 4 cut(s) 64, 71, 80, 105
BslI CCNNNNNNNGG 4 cut(s) 58, 59, 70, 836
BsmI GAATGC 1 cut(s) 905
BsnI GGCC 2 cut(s) 63, 264
Bsp1286I GDGCHC 2 cut(s) 53, 650
Bsp13I TCCGGA 1 cut(s) 79
Bsp143I GATC 3 cut(s) 19, 28, 745
Bsp1720I GCTNAGC 1 cut(s) 486
BspACI CCGC 5 cut(s) 53, 108, 111, 302, 809
BspANI GGCC 2 cut(s) 63, 264
BspCNI CTCAG 1 cut(s) 478
BspEI TCCGGA 1 cut(s) 79
BspFNI CGCG 1 cut(s) 809
BspHI TCATGA 1 cut(s) 478
BspLI GGNNCC 3 cut(s) 21, 30, 155
BspMAI CTGCAG 1 cut(s) 322
BspPI GGATC 4 cut(s) 14, 23, 27, 36
BspT107I GGYRCC 1 cut(s) 153
BsrDI GCAATG 1 cut(s) 513
BsrFI RCCGGY 1 cut(s) 63
BsrI ACTGG 2 cut(s) 44, 63
BssAI RCCGGY 1 cut(s) 63
BssECI CCNNGG 3 cut(s) 23, 149, 357
BssMI GATC 3 cut(s) 19, 28, 745
BssT1I CCWWGG 1 cut(s) 149
Bst2UI CCWGG 1 cut(s) 24
Bst4CI ACNGT 4 cut(s) 562, 692, 853, 918
Bst6I CTCTTC 1 cut(s) 453
BstC8I GCNNGC 2 cut(s) 53, 718
BstDEI CTNAG 3 cut(s) 432, 486, 629
BstDSI CCRYGG 1 cut(s) 357
BstF5I GGATG 1 cut(s) 334
BstFNI CGCG 1 cut(s) 809
BstKTI GATC 3 cut(s) 22, 31, 748
BstMBI GATC 3 cut(s) 19, 28, 745
BstMWI GCNNNNNNNGC 1 cut(s) 117
BstNI CCWGG 1 cut(s) 24
BstSCI CCNGG 1 cut(s) 22
BstSFI CTRYAG 1 cut(s) 318
BstUI CGCG 1 cut(s) 809
BstV1I GCAGC 2 cut(s) 789, 895
BstX2I RGATCY 2 cut(s) 19, 28
BstXI CCANNNNNNTGG 1 cut(s) 692
BstYI RGATCY 2 cut(s) 19, 28
BsuI GTATCC 1 cut(s) 954
BsuRI GGCC 2 cut(s) 63, 264
BtgI CCRYGG 1 cut(s) 357
BtgZI GCGATG 1 cut(s) 201
BtsCI GGATG 1 cut(s) 334
BtsIMutI CAGTG 1 cut(s) 558
Cac8I GCNNGC 2 cut(s) 53, 718
CciI TCATGA 1 cut(s) 478
Cfr10I RCCGGY 1 cut(s) 63
Cfr13I GGNCC 1 cut(s) 61
Csp6I GTAC 2 cut(s) 154, 501
CviAII CATG 2 cut(s) 479, 788
CviJI RGCY 9 cut(s) 15, 51, 63, 147, 189, 228, 264, 356, 716
CviKI_1 RGCY 9 cut(s) 15, 51, 63, 147, 189, 228, 264, 356, 716
CviQI GTAC 2 cut(s) 154, 501
DdeI CTNAG 3 cut(s) 432, 486, 629
DpnI GATC 3 cut(s) 21, 30, 747
DpnII GATC 3 cut(s) 19, 28, 745
Eam1104I CTCTTC 1 cut(s) 453
EarI CTCTTC 1 cut(s) 453
Eco130I CCWWGG 1 cut(s) 149
Eco24I GRGCYC 1 cut(s) 53
EcoRII CCWGG 1 cut(s) 22
EcoT14I CCWWGG 1 cut(s) 149
EcoT22I ATGCAT 2 cut(s) 796, 907
EcoT38I GRGCYC 1 cut(s) 53
ErhI CCWWGG 1 cut(s) 149
FaeI CATG 2 cut(s) 482, 791
FaiI YATR 9 cut(s) 172, 480, 600, 774, 789, 867, 921, 967, 969
FatI CATG 2 cut(s) 478, 787
FauI CCCGC 1 cut(s) 60
FbaI TGATCA 1 cut(s) 745
Fnu4HI GCNGC 4 cut(s) 109, 778, 810, 884
FokI GGATG 1 cut(s) 321
FriOI GRGCYC 1 cut(s) 53
Fsp4HI GCNGC 4 cut(s) 109, 778, 810, 884
FspBI CTAG 4 cut(s) 11, 150, 186, 537
GluI GCNGC 4 cut(s) 109, 778, 810, 884
HaeIII GGCC 2 cut(s) 63, 264
HapII CCGG 4 cut(s) 64, 71, 80, 105
Hin1II CATG 2 cut(s) 482, 791
HinfI GANTC 4 cut(s) 99, 274, 625, 869
HpaII CCGG 4 cut(s) 64, 71, 80, 105
HphI GGTGA 1 cut(s) 125
Hpy166II GTNNAC 1 cut(s) 991
Hpy188I TCNGA 3 cut(s) 48, 532, 710
Hpy188III TCNNGA 3 cut(s) 80, 479, 523
Hpy8I GTNNAC 1 cut(s) 991
HpyAV CCTTC 3 cut(s) 174, 252, 601
HpyCH4III ACNGT 4 cut(s) 562, 692, 853, 918
HpyCH4IV ACGT 3 cut(s) 141, 863, 972
HpyCH4V TGCA 6 cut(s) 320, 558, 720, 794, 905, 930
HpyF10VI GCNNNNNNNGC 1 cut(s) 117
HpyF3I CTNAG 3 cut(s) 432, 486, 629
HpySE526I ACGT 3 cut(s) 141, 863, 972
Hsp92II CATG 2 cut(s) 482, 791
Kpn2I TCCGGA 1 cut(s) 79
KpnI GGTACC 1 cut(s) 157
Ksp22I TGATCA 1 cut(s) 745
Kzo9I GATC 3 cut(s) 19, 28, 745
LmnI GCTCC 1 cut(s) 713
Lsp1109I GCAGC 2 cut(s) 789, 895
LweI GCATC 5 cut(s) 472, 559, 781, 803, 892
MaeI CTAG 4 cut(s) 11, 150, 186, 537
MaeII ACGT 3 cut(s) 141, 863, 972
MaeIII GTNAC 3 cut(s) 113, 404, 782
MalI GATC 3 cut(s) 21, 30, 747
MboI GATC 3 cut(s) 19, 28, 745
MboII GAAGA 3 cut(s) 380, 467, 470
MfeI CAATTG 1 cut(s) 735
MflI RGATCY 2 cut(s) 19, 28
MhlI GDGCHC 2 cut(s) 53, 650
MluCI AATT 9 cut(s) 209, 341, 348, 381, 473, 704, 735, 856, 975
MlyI GAGTC 1 cut(s) 619
MnlI CCTC 9 cut(s) 76, 147, 210, 213, 216, 275, 306, 454, 704
Mph1103I ATGCAT 2 cut(s) 796, 907
MroI TCCGGA 1 cut(s) 79
MseI TTAA 3 cut(s) 363, 510, 978
MspA1I CMGCKG 1 cut(s) 304
MspI CCGG 4 cut(s) 64, 71, 80, 105
MspR9I CCNGG 1 cut(s) 24
MunI CAATTG 1 cut(s) 735
Mva1269I GAATGC 1 cut(s) 905
MvaI CCWGG 1 cut(s) 24
MvnI CGCG 1 cut(s) 809
MwoI GCNNNNNNNGC 1 cut(s) 117
NdeII GATC 3 cut(s) 19, 28, 745
NlaIII CATG 2 cut(s) 482, 791
NlaIV GGNNCC 3 cut(s) 21, 30, 155
NmuCI GTSAC 1 cut(s) 404
NsiI ATGCAT 2 cut(s) 796, 907
PagI TCATGA 1 cut(s) 478
PctI GAATGC 1 cut(s) 905
PfeI GAWTC 3 cut(s) 99, 274, 869
PkrI GCNGC 4 cut(s) 110, 779, 811, 885
PleI GAGTC 1 cut(s) 619
PpsI GAGTC 1 cut(s) 619
Psp6I CCWGG 1 cut(s) 22
PspGI CCWGG 1 cut(s) 22
PspN4I GGNNCC 3 cut(s) 21, 30, 155
PspPI GGNCC 1 cut(s) 61
PstI CTGCAG 1 cut(s) 322
PsuI RGATCY 2 cut(s) 19, 28
RsaI GTAC 2 cut(s) 155, 502
RsaNI GTAC 2 cut(s) 154, 501
SaqAI TTAA 3 cut(s) 363, 510, 978
SatI GCNGC 4 cut(s) 109, 778, 810, 884
Sau3AI GATC 3 cut(s) 19, 28, 745
Sau96I GGNCC 1 cut(s) 61
SchI GAGTC 1 cut(s) 619
ScrFI CCNGG 1 cut(s) 24
SduI GDGCHC 2 cut(s) 53, 650
SfaNI GCATC 5 cut(s) 472, 559, 781, 803, 892
SfcI CTRYAG 1 cut(s) 318
SmlI CTYRAG 1 cut(s) 395
SmoI CTYRAG 1 cut(s) 395
Sse9I AATT 9 cut(s) 209, 341, 348, 381, 473, 704, 735, 856, 975
SsiI CCGC 5 cut(s) 53, 108, 111, 302, 809
SspMI CTAG 4 cut(s) 11, 150, 186, 537
StyD4I CCNGG 1 cut(s) 22
StyI CCWWGG 1 cut(s) 149
TaaI ACNGT 4 cut(s) 562, 692, 853, 918
TaiI ACGT 3 cut(s) 144, 866, 975
TaqI TCGA 2 cut(s) 175, 594
TasI AATT 9 cut(s) 209, 341, 348, 381, 473, 704, 735, 856, 975
TauI GCSGC 2 cut(s) 111, 812
TfiI GAWTC 3 cut(s) 99, 274, 869
Tru1I TTAA 3 cut(s) 363, 510, 978
Tru9I TTAA 3 cut(s) 363, 510, 978
TscAI CASTG 1 cut(s) 565
TseFI GTSAC 1 cut(s) 404
TseI GCWGC 2 cut(s) 777, 883
Tsp45I GTSAC 1 cut(s) 404
TspDTI ATGAA 4 cut(s) 381, 467, 633, 911
TspRI CASTG 1 cut(s) 565
XapI RAATTY 2 cut(s) 704, 856
XmaJI CCTAGG 1 cut(s) 149
XspI CTAG 4 cut(s) 11, 150, 186, 537
Zsp2I ATGCAT 2 cut(s) 796, 907
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.