Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0016291

Physical Location & Seq

Genomic Coordinates Reverse (-)

9930387 .. 9931289

Gene Structure 903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g17362.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGCCACTGGATTCCCTTGTGTTTCTCAGACTCACACACAAGACTACCCTTCTCCTTACTTGCAACCCACTCATCATATTGCTCCACAACCACTCACCACCTCTCCTCAAAGCCCATCCATCCCTTCGTACTACACACCTCATACTAACCCGAATCTCCAGATTCATCCTCCAATTTCACCAAACAGCTCACATGAACCTTTGGTGGTTCACTCTCATCTGTGGAGGGCTCGTTGCAAGCAAGTCGCTCTCAAGTCGACTGCTGCCACTGGAGGAGTGAAGAAGCACCGCCGATTCAGGCTCGGGACAGCCGCGCTCCGCGATGCTCCAAAGACTATAGGTAAACATCAAGGAAGAGGGAAGTTTGACTCTCCGCAGCAGTCGTCAACACCCGAATCGATTTCAGCCACGACTGGGGCTTCGTCATCACTCATTTCTGCCAATGATGGAAGCCAAGTTGATATGTCTGTGGAGTTTGGGTCTCTGCCGCCATCATCAGTCGACCTTACTGTGGCTACTACTAATGGTGGTGTGGTAAGAATCTCTACTAATACGGGGTTGAATTTGTCGCAACATGAAGTTGGTTTCAATAGTGAAATAAGCACTGAACCTGTGGCATCTGATATTTCAACAACATCTACTGTTAAACTGGTTGGAAGTCCACAGGAGGTTGAGAGTGTTACCAAAACTGTTGATGGAGACAAAATTAGAGGGGTACTGTCGAAAACCAAGGAACTTGGTCAATCTTATCAACATGCTAGAGTGGGTTTAGGCCACTTTGGCGAGGTGAACTCTTCAATTAGTCTGCTTATTGCTGTTGGTTCTGGTGATATGATGCAAGAGGAAATAAGAGACGACACTGCTATGGGAACCAATGTGTCTGATTATGAATTGAAACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

301

Amino Acids

31.93

Weight (kDa)

6.67

Isoelectric Point (pI)

48.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016291)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g30941 FvH4_5g02451 FvH4_5g17361 FvH4_5g17362
rosa_chinensis	RchiOBHm_Chr1g0383661 RchiOBHm_Chr4g0407001 RchiOBHm_Chr5g0029671
rosa_multiflora	Rmu_sc0000665.1_g000017 Rmu_sc0011574.1_g000005 Rmu_sc0011574.1_g000006 Rmu_ssc0000135.1_g000005
rosa_roxburghii	Rroxscaffold_3G00256940 Rroxscaffold_4G00289440 Rroxscaffold_7G00179290
rosa_rugosa	Rorug04G0076400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	257, 501
AccII	CGCG	2 cut(s)	314, 321
AciI	CCGC	5 cut(s)	289, 312, 319, 374, 488
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	562
AfaI	GTAC	2 cut(s)	131, 717
AfiI	CCNNNNNNNGG	2 cut(s)	414, 511
AgsI	TTSAA	5 cut(s)	562, 589, 630, 798, 895
AluBI	AGCT	1 cut(s)	189
AluI	AGCT	1 cut(s)	189
Alw26I	GTCTC	3 cut(s)	486, 693, 846
Ama87I	CYCGRG	1 cut(s)	302
AoxI	GGCC	2 cut(s)	3, 772
ApeKI	GCWGC	2 cut(s)	263, 376
ApoI	RAATTY	1 cut(s)	562
ArsI	GACNNNNNNTTYG	2 cut(s)	403, 435
AspLEI	GCGC	1 cut(s)	316
AsuHPI	GGTGA	4 cut(s)	88, 171, 799, 839
AvaI	CYCGRG	1 cut(s)	302
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	232
BbvI	GCAGC	2 cut(s)	250, 388
BccI	CCATC	5 cut(s)	124, 128, 440, 499, 689
BcgI	CGANNNNNNTGC	2 cut(s)	226, 260
BcoDI	GTCTC	3 cut(s)	486, 693, 846
BfaI	CTAG	1 cut(s)	759
BfmI	CTRYAG	1 cut(s)	336
BglI	GCCNNNNNGGC	1 cut(s)	780
BisI	GCNGC	4 cut(s)	264, 312, 377, 488
BlsI	GCNGC	4 cut(s)	265, 313, 378, 489
BmeT110I	CYCGRG	1 cut(s)	302
BmiI	GGNNCC	1 cut(s)	871
BmrI	ACTGGG	1 cut(s)	423
BmsI	GCATC	3 cut(s)	313, 626, 825
BmuI	ACTGGG	1 cut(s)	423
BplI	GAGNNNNNCTC	2 cut(s)	776, 808
BpmI	CTGGAG	2 cut(s)	143, 291
BpuEI	CTTGAG	1 cut(s)	236
Bsa29I	ATCGAT	1 cut(s)	398
BsaI	GGTCTC	1 cut(s)	486
BsaJI	CCNNGG	1 cut(s)	729
BsaXI	ACNNNNNCTCC	6 cut(s)	88, 118, 217, 247, 464, 494
Bsc4I	CCNNNNNNNGG	2 cut(s)	414, 511
Bse1I	ACTGG	4 cut(s)	13, 274, 418, 654
BseCI	ATCGAT	1 cut(s)	398
BseDI	CCNNGG	1 cut(s)	729
BseGI	GGATG	3 cut(s)	116, 120, 166
BseLI	CCNNNNNNNGG	2 cut(s)	414, 511
BseMII	CTCAG	1 cut(s)	41
BseNI	ACTGG	4 cut(s)	13, 274, 418, 654
BseRI	GAGGAG	2 cut(s)	96, 288
BseXI	GCAGC	2 cut(s)	250, 388
Bsh1236I	CGCG	2 cut(s)	314, 321
BshFI	GGCC	2 cut(s)	5, 774
BshVI	ATCGAT	1 cut(s)	398
BsiHKCI	CYCGRG	1 cut(s)	302
BslFI	GGGAC	1 cut(s)	319
BslI	CCNNNNNNNGG	2 cut(s)	414, 511
BsmAI	GTCTC	3 cut(s)	486, 693, 846
BsmBI	CGTCTC	1 cut(s)	846
BsmFI	GGGAC	1 cut(s)	319
BsnI	GGCC	2 cut(s)	5, 774
Bso31I	GGTCTC	1 cut(s)	486
BsoBI	CYCGRG	1 cut(s)	302
Bsp1286I	GDGCHC	1 cut(s)	232
BspACI	CCGC	5 cut(s)	289, 312, 319, 374, 488
BspANI	GGCC	2 cut(s)	5, 774
BspCNI	CTCAG	1 cut(s)	40
BspDI	ATCGAT	1 cut(s)	398
BspFNI	CGCG	2 cut(s)	314, 321
BspLI	GGNNCC	1 cut(s)	871
BspTNI	GGTCTC	1 cut(s)	486
BsrI	ACTGG	4 cut(s)	13, 274, 418, 654
BssECI	CCNNGG	1 cut(s)	729
BssT1I	CCWWGG	1 cut(s)	729
Bst4CI	ACNGT	4 cut(s)	511, 643, 691, 720
Bst6I	CTCTTC	2 cut(s)	349, 799
BstC8I	GCNNGC	1 cut(s)	239
BstDEI	CTNAG	1 cut(s)	27
BstF5I	GGATG	3 cut(s)	116, 120, 166
BstFNI	CGCG	2 cut(s)	314, 321
BstHHI	GCGC	1 cut(s)	316
BstMAI	GTCTC	3 cut(s)	486, 693, 846
BstMWI	GCNNNNNNNGC	1 cut(s)	780
BstNSI	RCATGY	1 cut(s)	758
BstSFI	CTRYAG	1 cut(s)	336
BstUI	CGCG	2 cut(s)	314, 321
BstV1I	GCAGC	2 cut(s)	250, 388
Bsu15I	ATCGAT	1 cut(s)	398
BsuRI	GGCC	2 cut(s)	5, 774
BsuTUI	ATCGAT	1 cut(s)	398
BtgZI	GCGATG	1 cut(s)	336
BtsCI	GGATG	3 cut(s)	116, 120, 166
BtsI	GCAGTG	1 cut(s)	858
BtsIMutI	CAGTG	4 cut(s)	6, 267, 603, 858
Cac8I	GCNNGC	1 cut(s)	239
CfoI	GCGC	1 cut(s)	316
ClaI	ATCGAT	1 cut(s)	398
Csp6I	GTAC	2 cut(s)	130, 716
CviAII	CATG	3 cut(s)	194, 575, 755
CviQI	GTAC	2 cut(s)	130, 716
DdeI	CTNAG	1 cut(s)	27
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	349, 799
EarI	CTCTTC	2 cut(s)	349, 799
Eco130I	CCWWGG	1 cut(s)	729
Eco24I	GRGCYC	1 cut(s)	232
Eco31I	GGTCTC	1 cut(s)	486
Eco88I	CYCGRG	1 cut(s)	302
EcoT14I	CCWWGG	1 cut(s)	729
EcoT38I	GRGCYC	1 cut(s)	232
ErhI	CCWWGG	1 cut(s)	729
Esp3I	CGTCTC	1 cut(s)	846
FaeI	CATG	3 cut(s)	197, 578, 758
FaqI	GGGAC	1 cut(s)	319
FatI	CATG	3 cut(s)	193, 574, 754
FblI	GTMKAC	2 cut(s)	257, 501
Fnu4HI	GCNGC	4 cut(s)	264, 312, 377, 488
FokI	GGATG	3 cut(s)	103, 107, 153
FriOI	GRGCYC	1 cut(s)	232
Fsp4HI	GCNGC	4 cut(s)	264, 312, 377, 488
FspBI	CTAG	1 cut(s)	759
GlaI	GCGC	1 cut(s)	315
GluI	GCNGC	4 cut(s)	264, 312, 377, 488
GsuI	CTGGAG	2 cut(s)	143, 291
HaeIII	GGCC	2 cut(s)	5, 774
HhaI	GCGC	1 cut(s)	316
Hin1II	CATG	3 cut(s)	197, 578, 758
Hin6I	GCGC	1 cut(s)	314
HinP1I	GCGC	1 cut(s)	314
HincII	GTYRAC	3 cut(s)	258, 387, 502
HindII	GTYRAC	3 cut(s)	258, 387, 502
HinfI	GANTC	8 cut(s)	12, 31, 154, 163, 294, 368, 395, 540
HphI	GGTGA	4 cut(s)	88, 171, 799, 839
Hpy166II	GTNNAC	7 cut(s)	211, 258, 344, 387, 502, 662, 790
Hpy188I	TCNGA	3 cut(s)	30, 622, 883
Hpy188III	TCNNGA	2 cut(s)	160, 304
Hpy8I	GTNNAC	7 cut(s)	211, 258, 344, 387, 502, 662, 790
HpyAV	CCTTC	2 cut(s)	60, 135
HpyCH4III	ACNGT	4 cut(s)	511, 643, 691, 720
HpyCH4V	TGCA	3 cut(s)	64, 237, 838
HpyF10VI	GCNNNNNNNGC	1 cut(s)	780
HpyF3I	CTNAG	1 cut(s)	27
Hsp92II	CATG	3 cut(s)	197, 578, 758
HspAI	GCGC	1 cut(s)	314
LmnI	GCTCC	3 cut(s)	88, 321, 331
LpnPI	CCDG	8 cut(s)	173, 255, 283, 399, 624, 635, 650, 810
Lsp1109I	GCAGC	2 cut(s)	250, 388
LweI	GCATC	3 cut(s)	313, 626, 825
MaeI	CTAG	1 cut(s)	759
MaeIII	GTNAC	1 cut(s)	679
MboII	GAAGA	3 cut(s)	292, 366, 786
MhlI	GDGCHC	1 cut(s)	232
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	174, 562, 705, 798, 890
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	25, 362
MmeI	TCCRAC	1 cut(s)	634
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	645
MslI	CAYNNNNRTG	1 cut(s)	863
Msp20I	TGGCCA	1 cut(s)	5
MvnI	CGCG	2 cut(s)	314, 321
MwoI	GCNNNNNNNGC	1 cut(s)	780
NlaIII	CATG	3 cut(s)	197, 578, 758
NlaIV	GGNNCC	1 cut(s)	871
NspI	RCATGY	1 cut(s)	758
PfeI	GAWTC	6 cut(s)	12, 154, 163, 294, 395, 540
PkrI	GCNGC	4 cut(s)	265, 313, 378, 489
PleI	GAGTC	2 cut(s)	25, 362
PpsI	GAGTC	2 cut(s)	25, 362
PspN4I	GGNNCC	1 cut(s)	871
RsaI	GTAC	2 cut(s)	131, 717
RsaNI	GTAC	2 cut(s)	130, 716
RseI	CAYNNNNRTG	1 cut(s)	863
SalI	GTCGAC	2 cut(s)	256, 500
SaqAI	TTAA	1 cut(s)	645
SatI	GCNGC	4 cut(s)	264, 312, 377, 488
SchI	GAGTC	2 cut(s)	25, 362
SduI	GDGCHC	1 cut(s)	232
SetI	ASST	9 cut(s)	104, 142, 191, 202, 343, 507, 613, 672, 789
SfaNI	GCATC	3 cut(s)	313, 626, 825
SfcI	CTRYAG	1 cut(s)	336
SmiMI	CAYNNNNRTG	1 cut(s)	863
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	5 cut(s)	174, 562, 705, 798, 890
SsiI	CCGC	5 cut(s)	289, 312, 319, 374, 488
SspMI	CTAG	1 cut(s)	759
StyI	CCWWGG	1 cut(s)	729
TaaI	ACNGT	4 cut(s)	511, 643, 691, 720
TaqI	TCGA	4 cut(s)	257, 398, 501, 722
TasI	AATT	5 cut(s)	174, 562, 705, 798, 890
TauI	GCSGC	2 cut(s)	314, 490
TfiI	GAWTC	6 cut(s)	12, 154, 163, 294, 395, 540
Tru1I	TTAA	1 cut(s)	645
Tru9I	TTAA	1 cut(s)	645
TscAI	CASTG	4 cut(s)	13, 274, 610, 865
TseI	GCWGC	2 cut(s)	263, 376
TspDTI	ATGAA	4 cut(s)	155, 210, 591, 903
TspRI	CASTG	4 cut(s)	13, 274, 610, 865
XapI	RAATTY	1 cut(s)	562
XceI	RCATGY	1 cut(s)	758
XmiI	GTMKAC	2 cut(s)	257, 501
XspI	CTAG	1 cut(s)	759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.