Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011574.1

Orthogroup ID

OG0016291

Physical Location & Seq

Genomic Coordinates Forward (+)

12634 .. 14229

Gene Structure 1596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011574.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1596 bp

atgactcttagagctgttcctgtgagcactagtggatttgatgtgtttttaaaatgtgaatgtttccaaaacggtggcgctttcaaattcagaggagcttccattctcatgttttcaattgatgatgatcaagttgctaaaggggttgaaacacatagcagcagtaaccatgatgcatcattgtctttcgcggcaaaactctggggtattcctacaagtgggttcaaggaaactgtaaatttgacatatgattctattattgaacaacagattacgatgaaagatgcattttacaaacaattggctctggtgtatcgattttgcaagttgggtcattttgataaggcaaaagggatactatatgatgtaattaagcattcttttgactccaccatggttattgataatggcttcttgaatggtaatattggtgaagagaatttgtctgctggagacaagtatgaaaaagtgcaagtgacttctgaaatggtgctagagaaaatatgggagaaatggaaatcaaaagttcatgccaaatttgtaagtgaagggaatgcaacggagcgggattctactgttggggaatggctcaatcttgacagagagatggtgatatgttctgctgatgcacaatctgcagcaaagggagtgcaatggttcattctctccttacagctttgtcattgtaagataaagggggctaaactcttttgcaaggaagcatttgacagacttggtgaactgactcaaaactcattgtctcaggtattcactacattggatttaaattctcaacatgttagaaaagcttttgagagtatcttgtttggcatgcttaagctctgttgtaattgcttgaatgataaaattggagaagaaaattggcctcctgatgagtggattgagaaaatgaatagggatgtcaataatttgtttgataaatggttgagtagtgaaactagactttatagtttccaccatgctgctattcatgacgaaggctggggacttcctactctaagtgaaactttttatgctactcatcatgtcagtgtagaagctttatttcaattgctagacaagaaaactgacaaattggaccgcaagccttctttgggttctaaagaccttgattcaaaggaaagaaccaaacttgttagtgagcatcatgatatttttatgggttgcactaagcttcctgatgatttcaaggttgatgaccatagatgtgctttccacagaattttcattcaaccgctgattgttttctacttgagatacatagataagcagcccaaccttggaaggtatgatgatggtcatgctaaagtttcatctactgttttgaatgaaggagaatgtatgtttgtgactgttgttaatgtatgcactgctttagcttgtaagtatcgtccaattggtatagttgaggtgccagagacgtggtttttgggtgcagtgaatatgcatttggagaccatgattggaaaaagtaataatgtggagaaagagctgcatgtgaattttcttgaaaaccatatgaagctagatcagaagtgtttgggatatgttctgtgtaacttgggtgcaccttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

531

Amino Acids

60.26

Weight (kDa)

6.0

Isoelectric Point (pI)

27.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016291)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g30941 FvH4_5g02451 FvH4_5g17361 FvH4_5g17362
rosa_chinensis	RchiOBHm_Chr1g0383661 RchiOBHm_Chr4g0407001 RchiOBHm_Chr5g0029671
rosa_multiflora	Rmu_sc0000665.1_g000017 Rmu_sc0011574.1_g000005 Rmu_sc0011574.1_g000006 Rmu_ssc0000135.1_g000005
rosa_roxburghii	Rroxscaffold_3G00256940 Rroxscaffold_4G00289440 Rroxscaffold_7G00179290
rosa_rugosa	Rorug04G0076400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1432
AccBSI	CCGCTC	1 cut(s)	565
AccII	CGCG	1 cut(s)	191
AciI	CCGC	4 cut(s)	191, 565, 1102, 1256
AcsI	RAATTY	7 cut(s)	86, 238, 439, 536, 787, 1242, 1522
AfiI	CCNNNNNNNGG	3 cut(s)	218, 1115, 1301
AflII	CTTAAG	1 cut(s)	836
AflIII	ACRYGT	1 cut(s)	796
AhlI	ACTAGT	1 cut(s)	29
AjiI	CACGTC	1 cut(s)	1443
AjuI	GAANNNNNNNTTGG	2 cut(s)	1454, 1486
Alw21I	GWGCWC	2 cut(s)	29, 1591
Alw26I	GTCTC	4 cut(s)	447, 765, 1433, 1469
Alw44I	GTGCAC	1 cut(s)	1587
AoxI	GGCC	1 cut(s)	884
ApaLI	GTGCAC	1 cut(s)	1587
ApeKI	GCWGC	5 cut(s)	159, 638, 983, 1291, 1513
ApoI	RAATTY	7 cut(s)	86, 238, 439, 536, 787, 1242, 1522
ArsI	GACNNNNNNTTYG	2 cut(s)	1432, 1464
AspLEI	GCGC	1 cut(s)	80
AspS9I	GGNCC	1 cut(s)	1099
AsuHPI	GGTGA	3 cut(s)	443, 622, 749
AvaII	GGWCC	1 cut(s)	1099
BaeGI	GKGCMC	1 cut(s)	1591
BanI	GGYRCC	1 cut(s)	1432
Bbv12I	GWGCWC	2 cut(s)	29, 1591
BbvI	GCAGC	5 cut(s)	171, 650, 970, 1303, 1500
BccI	CCATC	2 cut(s)	601, 1310
BciVI	GTATCC	1 cut(s)	348
BclI	TGATCA	1 cut(s)	127
BcoDI	GTCTC	4 cut(s)	447, 765, 1433, 1469
BcuI	ACTAGT	1 cut(s)	29
BfaI	CTAG	5 cut(s)	30, 494, 960, 1076, 1547
BfmI	CTRYAG	1 cut(s)	636
BfoI	RGCGCY	1 cut(s)	81
BfrI	CTTAAG	1 cut(s)	836
BfuI	GTATCC	1 cut(s)	348
BisI	GCNGC	6 cut(s)	160, 192, 639, 984, 1292, 1514
BlsI	GCNGC	6 cut(s)	161, 193, 640, 985, 1293, 1515
Bme18I	GGWCC	1 cut(s)	1099
BmgBI	CACGTC	1 cut(s)	1443
BmgT120I	GGNCC	1 cut(s)	1099
BmiI	GGNNCC	1 cut(s)	1434
BmsI	GCATC	5 cut(s)	163, 185, 274, 616, 1174
BpmI	CTGGAG	1 cut(s)	471
BpuEI	CTTGAG	1 cut(s)	1294
Bsa29I	ATCGAT	1 cut(s)	316
BsaBI	GATNNNNATC	1 cut(s)	126
BsaI	GGTCTC	1 cut(s)	1469
BsaJI	CCNNGG	2 cut(s)	393, 1300
Bsc4I	CCNNNNNNNGG	3 cut(s)	218, 1115, 1301
Bse3DI	GCAATG	1 cut(s)	659
Bse8I	GATNNNNATC	1 cut(s)	126
BseCI	ATCGAT	1 cut(s)	316
BseDI	CCNNGG	2 cut(s)	393, 1300
BseGI	GGATG	1 cut(s)	925
BseJI	GATNNNNATC	1 cut(s)	126
BseLI	CCNNNNNNNGG	3 cut(s)	218, 1115, 1301
BseMI	GCAATG	1 cut(s)	659
BseMII	CTCAG	1 cut(s)	776
BseRI	GAGGAG	1 cut(s)	108
BseSI	GKGCMC	1 cut(s)	1591
BseXI	GCAGC	5 cut(s)	171, 650, 970, 1303, 1500
BseYI	CCCAGC	1 cut(s)	1002
BsgI	GTGCAG	1 cut(s)	1476
Bsh1236I	CGCG	1 cut(s)	191
BshFI	GGCC	1 cut(s)	886
BshNI	GGYRCC	1 cut(s)	1432
BshVI	ATCGAT	1 cut(s)	316
BsiHKAI	GWGCWC	2 cut(s)	29, 1591
BslFI	GGGAC	1 cut(s)	1020
BslI	CCNNNNNNNGG	3 cut(s)	218, 1115, 1301
BsmAI	GTCTC	4 cut(s)	447, 765, 1433, 1469
BsmBI	CGTCTC	1 cut(s)	1433
BsmFI	GGGAC	1 cut(s)	1020
BsmI	GAATGC	2 cut(s)	376, 559
BsnI	GGCC	1 cut(s)	886
Bso31I	GGTCTC	1 cut(s)	1469
Bsp1286I	GDGCHC	2 cut(s)	29, 1591
Bsp143I	GATC	2 cut(s)	127, 1549
Bsp19I	CCATGG	1 cut(s)	393
BspACI	CCGC	4 cut(s)	191, 565, 1102, 1256
BspANI	GGCC	1 cut(s)	886
BspCNI	CTCAG	1 cut(s)	775
BspDI	ATCGAT	1 cut(s)	316
BspFNI	CGCG	1 cut(s)	191
BspHI	TCATGA	2 cut(s)	991, 1168
BspLI	GGNNCC	1 cut(s)	1434
BspMAI	CTGCAG	1 cut(s)	640
BspT107I	GGYRCC	1 cut(s)	1432
BspTI	CTTAAG	1 cut(s)	836
BspTNI	GGTCTC	1 cut(s)	1469
BsrBI	CCGCTC	1 cut(s)	565
BsrDI	GCAATG	1 cut(s)	659
BssECI	CCNNGG	2 cut(s)	393, 1300
BssMI	GATC	2 cut(s)	127, 1549
BssT1I	CCWWGG	2 cut(s)	393, 1300
Bst4CI	ACNGT	5 cut(s)	74, 235, 577, 1342, 1375
Bst6I	CTCTTC	1 cut(s)	429
BstAFI	CTTAAG	1 cut(s)	836
BstAPI	GCANNNNNTGC	1 cut(s)	635
BstC8I	GCNNGC	2 cut(s)	833, 1106
BstDEI	CTNAG	4 cut(s)	8, 762, 1019, 1191
BstDSI	CCRYGG	1 cut(s)	393
BstF5I	GGATG	1 cut(s)	925
BstFNI	CGCG	1 cut(s)	191
BstH2I	RGCGCY	1 cut(s)	81
BstHHI	GCGC	1 cut(s)	80
BstKTI	GATC	2 cut(s)	130, 1552
BstMAI	GTCTC	4 cut(s)	447, 765, 1433, 1469
BstMBI	GATC	2 cut(s)	127, 1549
BstMWI	GCNNNNNNNGC	1 cut(s)	635
BstNSI	RCATGY	3 cut(s)	800, 835, 1520
BstSFI	CTRYAG	1 cut(s)	636
BstSLI	GKGCMC	1 cut(s)	1591
BstUI	CGCG	1 cut(s)	191
BstV1I	GCAGC	5 cut(s)	171, 650, 970, 1303, 1500
BstXI	CCANNNNNNTGG	2 cut(s)	74, 1443
Bsu15I	ATCGAT	1 cut(s)	316
BsuI	GTATCC	1 cut(s)	348
BsuRI	GGCC	1 cut(s)	886
BsuTUI	ATCGAT	1 cut(s)	316
BtgI	CCRYGG	1 cut(s)	393
BtrI	CACGTC	1 cut(s)	1443
BtsCI	GGATG	1 cut(s)	925
BtsI	GCAGTG	2 cut(s)	1389, 1464
BtsIMutI	CAGTG	3 cut(s)	1057, 1389, 1464
Cac8I	GCNNGC	2 cut(s)	833, 1106
CciI	TCATGA	2 cut(s)	991, 1168
CfoI	GCGC	1 cut(s)	80
Cfr13I	GGNCC	1 cut(s)	1099
ClaI	ATCGAT	1 cut(s)	316
DdeI	CTNAG	4 cut(s)	8, 762, 1019, 1191
DpnI	GATC	2 cut(s)	129, 1551
DpnII	GATC	2 cut(s)	127, 1549
DraI	TTTAAA	2 cut(s)	51, 786
Eam1104I	CTCTTC	1 cut(s)	429
EarI	CTCTTC	1 cut(s)	429
Eco130I	CCWWGG	2 cut(s)	393, 1300
Eco31I	GGTCTC	1 cut(s)	1469
Eco47I	GGWCC	1 cut(s)	1099
EcoT14I	CCWWGG	2 cut(s)	393, 1300
EcoT22I	ATGCAT	3 cut(s)	178, 289, 1470
ErhI	CCWWGG	2 cut(s)	393, 1300
Esp3I	CGTCTC	1 cut(s)	1433
FalI	AAGNNNNNCTT	2 cut(s)	1012, 1044
FaqI	GGGAC	1 cut(s)	1020
FauI	CCCGC	1 cut(s)	558
FauNDI	CATATG	2 cut(s)	247, 1539
FbaI	TGATCA	1 cut(s)	127
Fnu4HI	GCNGC	6 cut(s)	160, 192, 639, 984, 1292, 1514
FokI	GGATG	1 cut(s)	932
Fsp4HI	GCNGC	6 cut(s)	160, 192, 639, 984, 1292, 1514
FspBI	CTAG	5 cut(s)	30, 494, 960, 1076, 1547
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	6 cut(s)	160, 192, 639, 984, 1292, 1514
GsaI	CCCAGC	1 cut(s)	1006
GsuI	CTGGAG	1 cut(s)	471
HaeII	RGCGCY	1 cut(s)	81
HaeIII	GGCC	1 cut(s)	886
HhaI	GCGC	1 cut(s)	80
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HindIII	AAGCTT	3 cut(s)	807, 1059, 1193
HinfI	GANTC	6 cut(s)	4, 251, 386, 569, 745, 1133
HphI	GGTGA	3 cut(s)	443, 622, 749
Hpy166II	GTNNAC	2 cut(s)	740, 1589
Hpy188I	TCNGA	3 cut(s)	92, 484, 1554
Hpy188III	TCNNGA	7 cut(s)	415, 596, 890, 992, 1169, 1199, 1529
Hpy8I	GTNNAC	2 cut(s)	740, 1589
HpyAV	CCTTC	5 cut(s)	542, 992, 1119, 1299, 1346
HpyCH4III	ACNGT	5 cut(s)	74, 235, 577, 1342, 1375
HpyCH4IV	ACGT	1 cut(s)	1442
HpyF10VI	GCNNNNNNNGC	1 cut(s)	635
HpyF3I	CTNAG	4 cut(s)	8, 762, 1019, 1191
HpySE526I	ACGT	1 cut(s)	1442
HspAI	GCGC	1 cut(s)	78
Ksp22I	TGATCA	1 cut(s)	127
Kzo9I	GATC	2 cut(s)	127, 1549
LmnI	GCTCC	2 cut(s)	95, 562
LpnPI	CCDG	9 cut(s)	33, 187, 293, 435, 749, 903, 988, 1212, 1449
Lsp1109I	GCAGC	5 cut(s)	171, 650, 970, 1303, 1500
LweI	GCATC	5 cut(s)	163, 185, 274, 616, 1174
MaeI	CTAG	5 cut(s)	30, 494, 960, 1076, 1547
MaeII	ACGT	1 cut(s)	1442
MaeIII	GTNAC	4 cut(s)	164, 475, 1369, 1577
MalI	GATC	2 cut(s)	129, 1551
MbiI	CCGCTC	1 cut(s)	565
MboI	GATC	2 cut(s)	127, 1549
MboII	GAAGA	2 cut(s)	446, 887
MfeI	CAATTG	4 cut(s)	117, 299, 1070, 1416
MhlI	GDGCHC	2 cut(s)	29, 1591
MlyI	GAGTC	2 cut(s)	380, 739
MnlI	CCTC	3 cut(s)	86, 897, 1423
Mph1103I	ATGCAT	3 cut(s)	178, 289, 1470
MseI	TTAA	6 cut(s)	50, 372, 785, 837, 1380, 1594
MslI	CAYNNNNRTG	3 cut(s)	107, 1050, 1227
MspA1I	CMGCKG	1 cut(s)	1258
MspCI	CTTAAG	1 cut(s)	836
MunI	CAATTG	4 cut(s)	117, 299, 1070, 1416
Mva1269I	GAATGC	2 cut(s)	376, 559
MvnI	CGCG	1 cut(s)	191
MwoI	GCNNNNNNNGC	1 cut(s)	635
NcoI	CCATGG	1 cut(s)	393
NdeI	CATATG	2 cut(s)	247, 1539
NdeII	GATC	2 cut(s)	127, 1549
NlaIV	GGNNCC	1 cut(s)	1434
NmuCI	GTSAC	2 cut(s)	475, 1369
NsiI	ATGCAT	3 cut(s)	178, 289, 1470
NspI	RCATGY	3 cut(s)	800, 835, 1520
PaeI	GCATGC	1 cut(s)	835
PagI	TCATGA	2 cut(s)	991, 1168
PciI	ACATGT	1 cut(s)	796
PctI	GAATGC	2 cut(s)	376, 559
PfeI	GAWTC	3 cut(s)	251, 569, 1133
PkrI	GCNGC	6 cut(s)	161, 193, 640, 985, 1293, 1515
PleI	GAGTC	2 cut(s)	380, 739
PpsI	GAGTC	2 cut(s)	380, 739
PscI	ACATGT	1 cut(s)	796
PspFI	CCCAGC	1 cut(s)	1002
PspN4I	GGNNCC	1 cut(s)	1434
PspPI	GGNCC	1 cut(s)	1099
PstI	CTGCAG	1 cut(s)	640
RseI	CAYNNNNRTG	3 cut(s)	107, 1050, 1227
SaqAI	TTAA	6 cut(s)	50, 372, 785, 837, 1380, 1594
SatI	GCNGC	6 cut(s)	160, 192, 639, 984, 1292, 1514
Sau3AI	GATC	2 cut(s)	127, 1549
Sau96I	GGNCC	1 cut(s)	1099
SchI	GAGTC	2 cut(s)	380, 739
SduI	GDGCHC	2 cut(s)	29, 1591
SfaNI	GCATC	5 cut(s)	163, 185, 274, 616, 1174
SfcI	CTRYAG	1 cut(s)	636
SinI	GGWCC	1 cut(s)	1099
SmiI	ATTTAAAT	1 cut(s)	786
SmiMI	CAYNNNNRTG	3 cut(s)	107, 1050, 1227
SmlI	CTYRAG	2 cut(s)	836, 1273
SmoI	CTYRAG	2 cut(s)	836, 1273
SpeI	ACTAGT	1 cut(s)	29
SphI	GCATGC	1 cut(s)	835
SsiI	CCGC	4 cut(s)	191, 565, 1102, 1256
SspI	AATATT	1 cut(s)	427
SspMI	CTAG	5 cut(s)	30, 494, 960, 1076, 1547
StyI	CCWWGG	2 cut(s)	393, 1300
SwaI	ATTTAAAT	1 cut(s)	786
TaaI	ACNGT	5 cut(s)	74, 235, 577, 1342, 1375
TaiI	ACGT	1 cut(s)	1445
TaqI	TCGA	1 cut(s)	316
TauI	GCSGC	1 cut(s)	194
TfiI	GAWTC	3 cut(s)	251, 569, 1133
Tru1I	TTAA	6 cut(s)	50, 372, 785, 837, 1380, 1594
Tru9I	TTAA	6 cut(s)	50, 372, 785, 837, 1380, 1594
TscAI	CASTG	3 cut(s)	1057, 1396, 1464
TseFI	GTSAC	2 cut(s)	475, 1369
TseI	GCWGC	5 cut(s)	159, 638, 983, 1291, 1513
Tsp45I	GTSAC	2 cut(s)	475, 1369
TspGWI	ACGGA	1 cut(s)	575
TspRI	CASTG	3 cut(s)	1057, 1396, 1464
Vha464I	CTTAAG	1 cut(s)	836
VneI	GTGCAC	1 cut(s)	1587
VpaK11BI	GGWCC	1 cut(s)	1099
XapI	RAATTY	7 cut(s)	86, 238, 439, 536, 787, 1242, 1522
XceI	RCATGY	3 cut(s)	800, 835, 1520
XspI	CTAG	5 cut(s)	30, 494, 960, 1076, 1547
Zsp2I	ATGCAT	3 cut(s)	178, 289, 1470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.