Rmu_sc0011574.1_g000005

Elongation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011574.1
OG0016291
Physical Location & Seq
Forward (+)
11504 .. 12376
873 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011574.1_g000005.1.cds

Sequence Viewer

Length: 873 bp
atgtcatttctgggcttggatcctggggatcctaacaactggtatcagagctcgcaactgagcctgtttccggtgagtccggcggtgtacggcggtgggatctccggcgggtgttacagcacccattcttatcaccctcacagtagccctagctacccaccttcttctcaatttacattacaaccaagttacccaccaccttcccaaacaatcatcaatgggtatgtttttcctcaccaatttccacacctttctgcaaatcacgctcagttgagcactgctgcaccttcgccacacatttacccgtgttctcaaaaccaacattactcaagtaccgggctcttcaccaccataccccagtcacttcaaattccaactgaccctcatccgagtgaaatctatcaccattacccatctacccaaccccatttcattcctacaacgcagtcgcttaccccacctgtgttagttcctactgacgaacattgggaacctccccaattttcaaatacagccgtgactaatgaagacccttattcagttgctcttgaacttgatatgggtcacaagttagagaccaaaatttctactacgcgcgtggatgtggaggatgaagaagagttggaatctcaaaatccagaatcagtagcccaaccagtggagtctcaaattcatgatgagacaaacaagcgttcgttcaagtacgcttgggtgcttcacaagctccaggctgagcgtaaaaggagtactaccattgacattgctctctggaaatcggagactaccaactgcaatatctcttgcattgtcgacgatgttctggcatgtaatgggtatttcgagtatgcccagaaggtgtttgacgaaatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05134 map03013 map05134
Pfam Domains
Protein Families
GTP_EFTU GTP_EFTU_D2 GTP_EFTU_D3

Protein Analysis

290

Amino Acids

32.46

Weight (kDa)

5.06

Isoelectric Point (pI)

68.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 658
AccI GTMKAC 1 cut(s) 810
AccII CGCG 2 cut(s) 595, 597
AciI CCGC 3 cut(s) 83, 93, 108
AclWI GGATC 5 cut(s) 14, 23, 27, 36, 107
AcsI RAATTY 3 cut(s) 369, 582, 669
AfaI GTAC 4 cut(s) 89, 334, 704, 748
AfiI CCNNNNNNNGG 2 cut(s) 70, 658
AgsI TTSAA 4 cut(s) 368, 507, 551, 700
AjnI CCWGG 2 cut(s) 22, 726
AluBI AGCT 3 cut(s) 51, 153, 724
AluI AGCT 3 cut(s) 51, 153, 724
Alw21I GWGCWC 2 cut(s) 53, 278
Alw26I GTCTC 4 cut(s) 569, 669, 674, 773
AlwI GGATC 5 cut(s) 14, 23, 27, 36, 107
ApeKI GCWGC 1 cut(s) 281
ApoI RAATTY 3 cut(s) 369, 582, 669
AspLEI GCGC 1 cut(s) 597
AsuC2I CCSGG 1 cut(s) 337
AsuHPI GGTGA 5 cut(s) 85, 125, 227, 337, 395
BaeI ACNNNNGTAYC 2 cut(s) 316, 349
BamHI GGATCC 2 cut(s) 19, 28
BanII GRGCYC 2 cut(s) 53, 342
BbsI GAAGAC 1 cut(s) 534
Bbv12I GWGCWC 2 cut(s) 53, 278
BbvI GCAGC 1 cut(s) 268
BccI CCATC 1 cut(s) 421
BceAI ACGGC 2 cut(s) 106, 500
BciT130I CCWGG 2 cut(s) 24, 728
BcnI CCSGG 1 cut(s) 337
BcoDI GTCTC 4 cut(s) 569, 669, 674, 773
BfaI CTAG 1 cut(s) 150
BisI GCNGC 1 cut(s) 282
BlpI GCTNAGC 1 cut(s) 732
BlsI GCNGC 1 cut(s) 283
BmcAI AGTACT 1 cut(s) 748
Bme1390I CCNGG 3 cut(s) 24, 337, 728
BmiI GGNNCC 3 cut(s) 21, 30, 492
BmrFI CCNGG 3 cut(s) 24, 337, 728
BmrI ACTGGG 1 cut(s) 352
BmuI ACTGGG 1 cut(s) 352
BpiI GAAGAC 1 cut(s) 534
BpmI CTGGAG 1 cut(s) 710
Bpu1102I GCTNAGC 1 cut(s) 732
BpuEI CTTGAG 1 cut(s) 313
BpuMI CCSGG 1 cut(s) 337
BsaI GGTCTC 1 cut(s) 569
BsaJI CCNNGG 1 cut(s) 23
BsaWI WCCGGW 1 cut(s) 70
Bsc4I CCNNNNNNNGG 2 cut(s) 70, 658
Bse1I ACTGG 3 cut(s) 44, 358, 656
Bse3DI GCAATG 1 cut(s) 759
BseBI CCWGG 2 cut(s) 24, 728
BseDI CCNNGG 1 cut(s) 23
BseGI GGATG 3 cut(s) 385, 607, 616
BseLI CCNNNNNNNGG 2 cut(s) 70, 658
BseMI GCAATG 1 cut(s) 759
BseMII CTCAG 3 cut(s) 50, 281, 723
BseNI ACTGG 3 cut(s) 44, 358, 656
BseXI GCAGC 1 cut(s) 268
BsgI GTGCAG 1 cut(s) 267
Bsh1236I CGCG 2 cut(s) 595, 597
BsiHKAI GWGCWC 2 cut(s) 53, 278
BsiSI CCGG 4 cut(s) 71, 80, 105, 336
BslI CCNNNNNNNGG 2 cut(s) 70, 658
BsmAI GTCTC 4 cut(s) 569, 669, 674, 773
Bso31I GGTCTC 1 cut(s) 569
Bsp1286I GDGCHC 3 cut(s) 53, 278, 342
Bsp143I GATC 3 cut(s) 19, 28, 99
Bsp1720I GCTNAGC 1 cut(s) 732
BspACI CCGC 3 cut(s) 83, 93, 108
BspCNI CTCAG 3 cut(s) 51, 280, 724
BspFNI CGCG 2 cut(s) 595, 597
BspHI TCATGA 1 cut(s) 673
BspLI GGNNCC 3 cut(s) 21, 30, 492
BspPI GGATC 5 cut(s) 14, 23, 27, 36, 107
BspQI GCTCTTC 1 cut(s) 347
BspTNI GGTCTC 1 cut(s) 569
BsrDI GCAATG 1 cut(s) 759
BsrI ACTGG 3 cut(s) 44, 358, 656
BssECI CCNNGG 1 cut(s) 23
BssMI GATC 3 cut(s) 19, 28, 99
Bst2UI CCWGG 2 cut(s) 24, 728
Bst4CI ACNGT 1 cut(s) 143
Bst6I CTCTTC 2 cut(s) 347, 612
BstC8I GCNNGC 1 cut(s) 53
BstDEI CTNAG 3 cut(s) 59, 267, 732
BstF5I GGATG 3 cut(s) 385, 607, 616
BstFNI CGCG 2 cut(s) 595, 597
BstHHI GCGC 1 cut(s) 597
BstKTI GATC 3 cut(s) 22, 31, 102
BstMAI GTCTC 4 cut(s) 569, 669, 674, 773
BstMBI GATC 3 cut(s) 19, 28, 99
BstMWI GCNNNNNNNGC 2 cut(s) 263, 721
BstNI CCWGG 2 cut(s) 24, 728
BstNSI RCATGY 1 cut(s) 828
BstSCI CCNGG 3 cut(s) 22, 335, 726
BstUI CGCG 2 cut(s) 595, 597
BstV1I GCAGC 1 cut(s) 268
BstV2I GAAGAC 1 cut(s) 534
BstX2I RGATCY 3 cut(s) 19, 28, 99
BstYI RGATCY 3 cut(s) 19, 28, 99
BtsCI GGATG 3 cut(s) 385, 607, 616
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 2 cut(s) 276, 663
Cac8I GCNNGC 1 cut(s) 53
CciI TCATGA 1 cut(s) 673
CfoI GCGC 1 cut(s) 597
Csp6I GTAC 4 cut(s) 88, 333, 703, 747
CviAII CATG 2 cut(s) 674, 825
CviQI GTAC 4 cut(s) 88, 333, 703, 747
DdeI CTNAG 3 cut(s) 59, 267, 732
DpnI GATC 3 cut(s) 21, 30, 101
DpnII GATC 3 cut(s) 19, 28, 99
Eam1104I CTCTTC 2 cut(s) 347, 612
EarI CTCTTC 2 cut(s) 347, 612
Ecl136II GAGCTC 1 cut(s) 51
Eco24I GRGCYC 2 cut(s) 53, 342
Eco31I GGTCTC 1 cut(s) 569
Eco53kI GAGCTC 1 cut(s) 51
EcoICRI GAGCTC 1 cut(s) 51
EcoRII CCWGG 2 cut(s) 22, 726
EcoT38I GRGCYC 2 cut(s) 53, 342
FaeI CATG 2 cut(s) 677, 828
FaiI YATR 6 cut(s) 225, 353, 560, 675, 826, 846
FatI CATG 2 cut(s) 673, 824
FauI CCCGC 1 cut(s) 101
FblI GTMKAC 1 cut(s) 810
Fnu4HI GCNGC 1 cut(s) 282
FokI GGATG 3 cut(s) 372, 614, 623
FriOI GRGCYC 2 cut(s) 53, 342
Fsp4HI GCNGC 1 cut(s) 282
FspBI CTAG 1 cut(s) 150
GlaI GCGC 1 cut(s) 596
GluI GCNGC 1 cut(s) 282
GsuI CTGGAG 1 cut(s) 710
HapII CCGG 4 cut(s) 71, 80, 105, 336
HhaI GCGC 1 cut(s) 597
Hin1II CATG 2 cut(s) 677, 828
Hin6I GCGC 1 cut(s) 595
HinP1I GCGC 1 cut(s) 595
HincII GTYRAC 1 cut(s) 811
HindII GTYRAC 1 cut(s) 811
HinfI GANTC 4 cut(s) 76, 626, 641, 662
HpaII CCGG 4 cut(s) 71, 80, 105, 336
HphI GGTGA 5 cut(s) 85, 125, 227, 337, 395
Hpy166II GTNNAC 2 cut(s) 88, 811
Hpy188I TCNGA 3 cut(s) 48, 390, 778
Hpy188III TCNNGA 4 cut(s) 548, 638, 674, 769
Hpy8I GTNNAC 2 cut(s) 88, 811
Hpy99I CGWCG 1 cut(s) 815
HpyAV CCTTC 4 cut(s) 171, 210, 297, 847
HpyCH4III ACNGT 1 cut(s) 143
HpyCH4V TGCA 4 cut(s) 257, 284, 792, 804
HpyF10VI GCNNNNNNNGC 2 cut(s) 263, 721
HpyF3I CTNAG 3 cut(s) 59, 267, 732
Hsp92II CATG 2 cut(s) 677, 828
HspAI GCGC 1 cut(s) 595
Kzo9I GATC 3 cut(s) 19, 28, 99
LguI GCTCTTC 1 cut(s) 347
LmnI GCTCC 1 cut(s) 729
Lsp1109I GCAGC 1 cut(s) 268
MaeI CTAG 1 cut(s) 150
MaeIII GTNAC 5 cut(s) 113, 188, 360, 517, 563
MalI GATC 3 cut(s) 21, 30, 101
MboI GATC 3 cut(s) 19, 28, 99
MboII GAAGA 5 cut(s) 156, 334, 539, 626, 629
MflI RGATCY 3 cut(s) 19, 28, 99
MhlI GDGCHC 3 cut(s) 53, 278, 342
MluCI AATT 6 cut(s) 170, 239, 369, 500, 582, 669
MlyI GAGTC 2 cut(s) 85, 671
MmeI TCCRAC 2 cut(s) 398, 603
MnlI CCTC 5 cut(s) 147, 243, 393, 504, 601
MslI CAYNNNNRTG 1 cut(s) 390
MspI CCGG 4 cut(s) 71, 80, 105, 336
MspR9I CCNGG 3 cut(s) 24, 337, 728
MvaI CCWGG 2 cut(s) 24, 728
MvnI CGCG 2 cut(s) 595, 597
MwoI GCNNNNNNNGC 2 cut(s) 263, 721
NciI CCSGG 1 cut(s) 337
NdeII GATC 3 cut(s) 19, 28, 99
NlaIII CATG 2 cut(s) 677, 828
NlaIV GGNNCC 3 cut(s) 21, 30, 492
NmuCI GTSAC 3 cut(s) 360, 517, 563
NspI RCATGY 1 cut(s) 828
PagI TCATGA 1 cut(s) 673
PciSI GCTCTTC 1 cut(s) 347
PfeI GAWTC 2 cut(s) 626, 641
PflMI CCANNNNNTGG 1 cut(s) 658
PkrI GCNGC 1 cut(s) 283
PleI GAGTC 2 cut(s) 84, 670
PpsI GAGTC 2 cut(s) 84, 670
Psp124BI GAGCTC 1 cut(s) 53
Psp6I CCWGG 2 cut(s) 22, 726
PspGI CCWGG 2 cut(s) 22, 726
PspN4I GGNNCC 3 cut(s) 21, 30, 492
PsuI RGATCY 3 cut(s) 19, 28, 99
RsaI GTAC 4 cut(s) 89, 334, 704, 748
RsaNI GTAC 4 cut(s) 88, 333, 703, 747
RseI CAYNNNNRTG 1 cut(s) 390
SacI GAGCTC 1 cut(s) 53
SalI GTCGAC 1 cut(s) 809
SapI GCTCTTC 1 cut(s) 347
SatI GCNGC 1 cut(s) 282
Sau3AI GATC 3 cut(s) 19, 28, 99
ScaI AGTACT 1 cut(s) 748
SchI GAGTC 2 cut(s) 85, 671
ScrFI CCNGG 3 cut(s) 24, 337, 728
SduI GDGCHC 3 cut(s) 53, 278, 342
SmiMI CAYNNNNRTG 1 cut(s) 390
SmlI CTYRAG 1 cut(s) 328
SmoI CTYRAG 1 cut(s) 328
Sse9I AATT 6 cut(s) 170, 239, 369, 500, 582, 669
SsiI CCGC 3 cut(s) 83, 93, 108
SspMI CTAG 1 cut(s) 150
SstI GAGCTC 1 cut(s) 53
StyD4I CCNGG 3 cut(s) 22, 335, 726
TaaI ACNGT 1 cut(s) 143
TaqI TCGA 2 cut(s) 810, 840
TasI AATT 6 cut(s) 170, 239, 369, 500, 582, 669
TatI WGTACW 1 cut(s) 746
TfiI GAWTC 2 cut(s) 626, 641
TscAI CASTG 2 cut(s) 283, 663
TseFI GTSAC 3 cut(s) 360, 517, 563
TseI GCWGC 1 cut(s) 281
Tsp45I GTSAC 3 cut(s) 360, 517, 563
TspDTI ATGAA 4 cut(s) 421, 540, 627, 662
TspRI CASTG 2 cut(s) 283, 663
Van91I CCANNNNNTGG 1 cut(s) 658
XapI RAATTY 3 cut(s) 369, 582, 669
XceI RCATGY 1 cut(s) 828
XmiI GTMKAC 1 cut(s) 810
XspI CTAG 1 cut(s) 150
ZrmI AGTACT 1 cut(s) 748
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.