endonuclease activity
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g30941 FvH4_5g02451 FvH4_5g17361 FvH4_5g17362 |
| rosa_chinensis | RchiOBHm_Chr1g0383661 RchiOBHm_Chr4g0407001 RchiOBHm_Chr5g0029671 |
| rosa_multiflora | Rmu_sc0000665.1_g000017 Rmu_sc0011574.1_g000005 Rmu_sc0011574.1_g000006 Rmu_ssc0000135.1_g000005 |
| rosa_roxburghii | Rroxscaffold_3G00256940 Rroxscaffold_4G00289440 Rroxscaffold_7G00179290 |
| rosa_rugosa | Rorug04G0076400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 80, 1244 |
| Acc36I | ACCTGC | 1 cut(s) | 1217 |
| Acc65I | GGTACC | 1 cut(s) | 1229 |
| AccB1I | GGYRCC | 2 cut(s) | 1229, 1763 |
| AccI | GTMKAC | 1 cut(s) | 706 |
| AciI | CCGC | 6 cut(s) | 248, 251, 362, 386, 1189, 1841 |
| AclWI | GGATC | 2 cut(s) | 794, 1879 |
| AcoI | YGGCCR | 1 cut(s) | 279 |
| AcsI | RAATTY | 8 cut(s) | 164, 236, 436, 1101, 1162, 1409, 1657, 2295 |
| AcuI | CTGAAG | 3 cut(s) | 365, 693, 756 |
| AfaI | GTAC | 6 cut(s) | 670, 1231, 1324, 1533, 2124, 2267 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 288, 385, 958, 1387 |
| AflIII | ACRYGT | 1 cut(s) | 2143 |
| AjnI | CCWGG | 3 cut(s) | 711, 1953, 2312 |
| AleI | CACNNNNGTG | 1 cut(s) | 2144 |
| Alw26I | GTCTC | 9 cut(s) | 19, 88, 247, 360, 728, 925, 1626, 1720, 1903 |
| AlwI | GGATC | 2 cut(s) | 794, 1879 |
| AoxI | GGCC | 4 cut(s) | 279, 677, 1055, 2052 |
| ApeKI | GCWGC | 5 cut(s) | 311, 969, 2030, 2033, 2162 |
| ApoI | RAATTY | 8 cut(s) | 164, 236, 436, 1101, 1162, 1409, 1657, 2295 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1355, 1387 |
| AseI | ATTAAT | 2 cut(s) | 543, 1548 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1335 |
| Asp718I | GGTACC | 1 cut(s) | 1229 |
| AspLEI | GCGC | 1 cut(s) | 1277 |
| AspS9I | GGNCC | 2 cut(s) | 677, 1906 |
| AsuHPI | GGTGA | 4 cut(s) | 56, 527, 1498, 1976 |
| AsuNHI | GCTAGC | 2 cut(s) | 635, 947 |
| AvaII | GGWCC | 1 cut(s) | 1906 |
| BanI | GGYRCC | 2 cut(s) | 1229, 1763 |
| BbsI | GAAGAC | 1 cut(s) | 972 |
| BbvI | GCAGC | 5 cut(s) | 298, 981, 2017, 2020, 2149 |
| BccI | CCATC | 8 cut(s) | 314, 392, 572, 622, 818, 827, 1852, 2143 |
| BceAI | ACGGC | 1 cut(s) | 936 |
| BciT130I | CCWGG | 3 cut(s) | 713, 1955, 2314 |
| BciVI | GTATCC | 2 cut(s) | 142, 2146 |
| BclI | TGATCA | 2 cut(s) | 2064, 2209 |
| BcoDI | GTCTC | 9 cut(s) | 19, 88, 247, 360, 728, 925, 1626, 1720, 1903 |
| BfaI | CTAG | 5 cut(s) | 636, 948, 1053, 1629, 2289 |
| BfmI | CTRYAG | 1 cut(s) | 915 |
| BfuAI | ACCTGC | 1 cut(s) | 1217 |
| BfuI | GTATCC | 2 cut(s) | 142, 2146 |
| BglII | AGATCT | 1 cut(s) | 997 |
| BisI | GCNGC | 8 cut(s) | 251, 312, 387, 970, 1841, 2031, 2034, 2163 |
| BlpI | GCTNAGC | 1 cut(s) | 753 |
| BlsI | GCNGC | 8 cut(s) | 252, 313, 388, 971, 1842, 2032, 2035, 2164 |
| BmcAI | AGTACT | 1 cut(s) | 670 |
| Bme1390I | CCNGG | 3 cut(s) | 713, 1955, 2314 |
| Bme18I | GGWCC | 1 cut(s) | 1906 |
| BmgT120I | GGNCC | 2 cut(s) | 677, 1906 |
| BmiI | GGNNCC | 2 cut(s) | 1231, 1765 |
| BmrFI | CCNGG | 3 cut(s) | 713, 1955, 2314 |
| BmrI | ACTGGG | 2 cut(s) | 297, 883 |
| BmsI | GCATC | 4 cut(s) | 111, 500, 646, 2260 |
| BmtI | GCTAGC | 2 cut(s) | 639, 951 |
| BmuI | ACTGGG | 2 cut(s) | 297, 883 |
| BoxI | GACNNNNGTC | 1 cut(s) | 31 |
| BpiI | GAAGAC | 1 cut(s) | 972 |
| BpmI | CTGGAG | 1 cut(s) | 695 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1206 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 753 |
| BpuEI | CTTGAG | 2 cut(s) | 25, 2339 |
| BsaBI | GATNNNNATC | 3 cut(s) | 402, 1832, 1935 |
| BsaI | GGTCTC | 1 cut(s) | 360 |
| BsaJI | CCNNGG | 1 cut(s) | 1954 |
| BsaWI | WCCGGW | 1 cut(s) | 406 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 167, 197, 1042, 1072, 1136, 1166 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 288, 385, 958, 1387 |
| Bse1I | ACTGG | 5 cut(s) | 292, 517, 889, 1765, 2245 |
| Bse3DI | GCAATG | 1 cut(s) | 306 |
| Bse8I | GATNNNNATC | 3 cut(s) | 402, 1832, 1935 |
| BseBI | CCWGG | 3 cut(s) | 713, 1955, 2314 |
| BseDI | CCNNGG | 1 cut(s) | 1954 |
| BseGI | GGATG | 6 cut(s) | 583, 661, 721, 967, 1600, 1844 |
| BseJI | GATNNNNATC | 3 cut(s) | 402, 1832, 1935 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 288, 385, 958, 1387 |
| BseMI | GCAATG | 1 cut(s) | 306 |
| BseMII | CTCAG | 8 cut(s) | 258, 1220, 1248, 1431, 1733, 1908, 1916, 2276 |
| BseNI | ACTGG | 5 cut(s) | 292, 517, 889, 1765, 2245 |
| BseRI | GAGGAG | 1 cut(s) | 188 |
| BseXI | GCAGC | 5 cut(s) | 298, 981, 2017, 2020, 2149 |
| BsgI | GTGCAG | 1 cut(s) | 1033 |
| BshFI | GGCC | 4 cut(s) | 281, 679, 1057, 2054 |
| BshNI | GGYRCC | 2 cut(s) | 1229, 1763 |
| BsiSI | CCGG | 3 cut(s) | 209, 278, 407 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 288, 385, 958, 1387 |
| BsmAI | GTCTC | 9 cut(s) | 19, 88, 247, 360, 728, 925, 1626, 1720, 1903 |
| BsnI | GGCC | 4 cut(s) | 281, 679, 1057, 2054 |
| Bso31I | GGTCTC | 1 cut(s) | 360 |
| Bsp143I | GATC | 8 cut(s) | 140, 799, 997, 1081, 1775, 1884, 2064, 2209 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 753 |
| BspACI | CCGC | 6 cut(s) | 248, 251, 362, 386, 1189, 1841 |
| BspANI | GGCC | 4 cut(s) | 281, 679, 1057, 2054 |
| BspCNI | CTCAG | 8 cut(s) | 259, 1219, 1247, 1432, 1734, 1907, 1915, 2275 |
| BspHI | TCATGA | 1 cut(s) | 1569 |
| BspLI | GGNNCC | 2 cut(s) | 1231, 1765 |
| BspMI | ACCTGC | 1 cut(s) | 1217 |
| BspOI | GCTAGC | 2 cut(s) | 639, 951 |
| BspPI | GGATC | 2 cut(s) | 794, 1879 |
| BspT107I | GGYRCC | 2 cut(s) | 1229, 1763 |
| BspTNI | GGTCTC | 1 cut(s) | 360 |
| BsrDI | GCAATG | 1 cut(s) | 306 |
| BsrI | ACTGG | 5 cut(s) | 292, 517, 889, 1765, 2245 |
| BssECI | CCNNGG | 1 cut(s) | 1954 |
| BssMI | GATC | 8 cut(s) | 140, 799, 997, 1081, 1775, 1884, 2064, 2209 |
| Bst2UI | CCWGG | 3 cut(s) | 713, 1955, 2314 |
| Bst4CI | ACNGT | 6 cut(s) | 183, 691, 1178, 1327, 1750, 2127 |
| Bst6I | CTCTTC | 4 cut(s) | 131, 928, 1473, 1989 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2171 |
| BstC8I | GCNNGC | 2 cut(s) | 637, 949 |
| BstF5I | GGATG | 6 cut(s) | 583, 661, 721, 967, 1600, 1844 |
| BstHHI | GCGC | 1 cut(s) | 1277 |
| BstKTI | GATC | 8 cut(s) | 143, 802, 1000, 1084, 1778, 1887, 2067, 2212 |
| BstMAI | GTCTC | 9 cut(s) | 19, 88, 247, 360, 728, 925, 1626, 1720, 1903 |
| BstMBI | GATC | 8 cut(s) | 140, 799, 997, 1081, 1775, 1884, 2064, 2209 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1761, 2171 |
| BstNI | CCWGG | 3 cut(s) | 713, 1955, 2314 |
| BstNSI | RCATGY | 2 cut(s) | 886, 2147 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 31 |
| BstSCI | CCNGG | 3 cut(s) | 711, 1953, 2312 |
| BstSFI | CTRYAG | 1 cut(s) | 915 |
| BstV1I | GCAGC | 5 cut(s) | 298, 981, 2017, 2020, 2149 |
| BstV2I | GAAGAC | 1 cut(s) | 972 |
| BstX2I | RGATCY | 1 cut(s) | 997 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1961, 2008 |
| BstYI | RGATCY | 1 cut(s) | 997 |
| BsuI | GTATCC | 2 cut(s) | 142, 2146 |
| BsuRI | GGCC | 4 cut(s) | 281, 679, 1057, 2054 |
| BtsCI | GGATG | 6 cut(s) | 583, 661, 721, 967, 1600, 1844 |
| BtsIMutI | CAGTG | 4 cut(s) | 1346, 1437, 1758, 2074 |
| BveI | ACCTGC | 1 cut(s) | 1217 |
| Cac8I | GCNNGC | 2 cut(s) | 637, 949 |
| CciI | TCATGA | 1 cut(s) | 1569 |
| CfoI | GCGC | 1 cut(s) | 1277 |
| Cfr13I | GGNCC | 2 cut(s) | 677, 1906 |
| Csp6I | GTAC | 6 cut(s) | 669, 1230, 1323, 1532, 2123, 2266 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 30, 65, 355, 390 |
| CviQI | GTAC | 6 cut(s) | 669, 1230, 1323, 1532, 2123, 2266 |
| DpnI | GATC | 8 cut(s) | 142, 801, 999, 1083, 1777, 1886, 2066, 2211 |
| DpnII | GATC | 8 cut(s) | 140, 799, 997, 1081, 1775, 1884, 2064, 2209 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 80, 1244 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 80, 1244 |
| EaeI | YGGCCR | 1 cut(s) | 279 |
| Eam1104I | CTCTTC | 4 cut(s) | 131, 928, 1473, 1989 |
| EarI | CTCTTC | 4 cut(s) | 131, 928, 1473, 1989 |
| EciI | GGCGGA | 1 cut(s) | 237 |
| Eco147I | AGGCCT | 1 cut(s) | 1057 |
| Eco31I | GGTCTC | 1 cut(s) | 360 |
| Eco47I | GGWCC | 1 cut(s) | 1906 |
| Eco57I | CTGAAG | 3 cut(s) | 365, 693, 756 |
| EcoO109I | RGGNCCY | 2 cut(s) | 677, 1906 |
| EcoRI | GAATTC | 2 cut(s) | 164, 1657 |
| EcoRII | CCWGG | 3 cut(s) | 711, 1953, 2312 |
| EcoT22I | ATGCAT | 1 cut(s) | 936 |
| FauNDI | CATATG | 3 cut(s) | 9, 1426, 1924 |
| FbaI | TGATCA | 2 cut(s) | 2064, 2209 |
| FblI | GTMKAC | 1 cut(s) | 706 |
| Fnu4HI | GCNGC | 8 cut(s) | 251, 312, 387, 970, 1841, 2031, 2034, 2163 |
| FokI | GGATG | 6 cut(s) | 590, 668, 728, 974, 1607, 1831 |
| Fsp4HI | GCNGC | 8 cut(s) | 251, 312, 387, 970, 1841, 2031, 2034, 2163 |
| FspBI | CTAG | 5 cut(s) | 636, 948, 1053, 1629, 2289 |
| GlaI | GCGC | 1 cut(s) | 1276 |
| GluI | GCNGC | 8 cut(s) | 251, 312, 387, 970, 1841, 2031, 2034, 2163 |
| GsuI | CTGGAG | 1 cut(s) | 695 |
| HaeIII | GGCC | 4 cut(s) | 281, 679, 1057, 2054 |
| HapII | CCGG | 3 cut(s) | 209, 278, 407 |
| HhaI | GCGC | 1 cut(s) | 1277 |
| Hin6I | GCGC | 1 cut(s) | 1275 |
| HinP1I | GCGC | 1 cut(s) | 1275 |
| HincII | GTYRAC | 3 cut(s) | 376, 853, 894 |
| HindII | GTYRAC | 3 cut(s) | 376, 853, 894 |
| HindIII | AAGCTT | 3 cut(s) | 1294, 1397, 2307 |
| HpaII | CCGG | 3 cut(s) | 209, 278, 407 |
| HphI | GGTGA | 4 cut(s) | 56, 527, 1498, 1976 |
| Hpy166II | GTNNAC | 5 cut(s) | 376, 707, 853, 894, 2123 |
| Hpy8I | GTNNAC | 5 cut(s) | 376, 707, 853, 894, 2123 |
| HpyAV | CCTTC | 5 cut(s) | 163, 668, 724, 1213, 2226 |
| HpyCH4III | ACNGT | 6 cut(s) | 183, 691, 1178, 1327, 1750, 2127 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1761, 2171 |
| HspAI | GCGC | 1 cut(s) | 1275 |
| KpnI | GGTACC | 1 cut(s) | 1233 |
| Ksp22I | TGATCA | 2 cut(s) | 2064, 2209 |
| Kzo9I | GATC | 8 cut(s) | 140, 799, 997, 1081, 1775, 1884, 2064, 2209 |
| LmnI | GCTCC | 3 cut(s) | 175, 814, 1760 |
| Lsp1109I | GCAGC | 5 cut(s) | 298, 981, 2017, 2020, 2149 |
| LweI | GCATC | 4 cut(s) | 111, 500, 646, 2260 |
| MaeI | CTAG | 5 cut(s) | 636, 948, 1053, 1629, 2289 |
| MaeIII | GTNAC | 6 cut(s) | 62, 685, 745, 1964, 2089, 2133 |
| MalI | GATC | 8 cut(s) | 142, 801, 999, 1083, 1777, 1886, 2066, 2211 |
| MboI | GATC | 8 cut(s) | 140, 799, 997, 1081, 1775, 1884, 2064, 2209 |
| MboII | GAAGA | 8 cut(s) | 148, 915, 972, 1270, 1490, 1727, 1730, 1976 |
| MfeI | CAATTG | 2 cut(s) | 568, 956 |
| MflI | RGATCY | 1 cut(s) | 997 |
| MlyI | GAGTC | 4 cut(s) | 278, 702, 1511, 1556 |
| MmeI | TCCRAC | 3 cut(s) | 141, 1665, 2261 |
| Mph1103I | ATGCAT | 1 cut(s) | 936 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1335 |
| MseI | TTAA | 9 cut(s) | 188, 543, 1029, 1041, 1395, 1548, 1707, 2100, 2325 |
| MslI | CAYNNNNRTG | 2 cut(s) | 822, 2144 |
| MspA1I | CMGCKG | 2 cut(s) | 1783, 2277 |
| MspI | CCGG | 3 cut(s) | 209, 278, 407 |
| MspR9I | CCNGG | 3 cut(s) | 713, 1955, 2314 |
| MunI | CAATTG | 2 cut(s) | 568, 956 |
| MvaI | CCWGG | 3 cut(s) | 713, 1955, 2314 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1761, 2171 |
| NdeI | CATATG | 3 cut(s) | 9, 1426, 1924 |
| NdeII | GATC | 8 cut(s) | 140, 799, 997, 1081, 1775, 1884, 2064, 2209 |
| NheI | GCTAGC | 2 cut(s) | 635, 947 |
| NlaIV | GGNNCC | 2 cut(s) | 1231, 1765 |
| NmuCI | GTSAC | 3 cut(s) | 62, 1964, 2133 |
| NsiI | ATGCAT | 1 cut(s) | 936 |
| NspI | RCATGY | 2 cut(s) | 886, 2147 |
| OliI | CACNNNNGTG | 1 cut(s) | 2144 |
| PagI | TCATGA | 1 cut(s) | 1569 |
| PceI | AGGCCT | 1 cut(s) | 1057 |
| PciI | ACATGT | 1 cut(s) | 2143 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1335 |
| PfeI | GAWTC | 9 cut(s) | 128, 274, 414, 610, 988, 1004, 1430, 1456, 1489 |
| PfoI | TCCNGGA | 1 cut(s) | 711 |
| PkrI | GCNGC | 8 cut(s) | 252, 313, 388, 971, 1842, 2032, 2035, 2164 |
| PleI | GAGTC | 4 cut(s) | 277, 702, 1510, 1556 |
| PpsI | GAGTC | 4 cut(s) | 277, 702, 1510, 1556 |
| PpuMI | RGGWCCY | 1 cut(s) | 1906 |
| PscI | ACATGT | 1 cut(s) | 2143 |
| PshAI | GACNNNNGTC | 1 cut(s) | 31 |
| PshBI | ATTAAT | 2 cut(s) | 543, 1548 |
| Psp5II | RGGWCCY | 1 cut(s) | 1906 |
| Psp6I | CCWGG | 3 cut(s) | 711, 1953, 2312 |
| PspGI | CCWGG | 3 cut(s) | 711, 1953, 2312 |
| PspN4I | GGNNCC | 2 cut(s) | 1231, 1765 |
| PspPI | GGNCC | 2 cut(s) | 677, 1906 |
| PspPPI | RGGWCCY | 1 cut(s) | 1906 |
| PsuI | RGATCY | 1 cut(s) | 997 |
| PvuII | CAGCTG | 2 cut(s) | 1783, 2277 |
| RsaI | GTAC | 6 cut(s) | 670, 1231, 1324, 1533, 2124, 2267 |
| RsaNI | GTAC | 6 cut(s) | 669, 1230, 1323, 1532, 2123, 2266 |
| RseI | CAYNNNNRTG | 2 cut(s) | 822, 2144 |
| SaqAI | TTAA | 9 cut(s) | 188, 543, 1029, 1041, 1395, 1548, 1707, 2100, 2325 |
| SatI | GCNGC | 8 cut(s) | 251, 312, 387, 970, 1841, 2031, 2034, 2163 |
| Sau3AI | GATC | 8 cut(s) | 140, 799, 997, 1081, 1775, 1884, 2064, 2209 |
| Sau96I | GGNCC | 2 cut(s) | 677, 1906 |
| ScaI | AGTACT | 1 cut(s) | 670 |
| SchI | GAGTC | 4 cut(s) | 278, 702, 1511, 1556 |
| ScrFI | CCNGG | 3 cut(s) | 713, 1955, 2314 |
| SfaNI | GCATC | 4 cut(s) | 111, 500, 646, 2260 |
| SfcI | CTRYAG | 1 cut(s) | 915 |
| SinI | GGWCC | 1 cut(s) | 1906 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 822, 2144 |
| SmlI | CTYRAG | 2 cut(s) | 40, 2318 |
| SmoI | CTYRAG | 2 cut(s) | 40, 2318 |
| SseBI | AGGCCT | 1 cut(s) | 1057 |
| SsiI | CCGC | 6 cut(s) | 248, 251, 362, 386, 1189, 1841 |
| SspI | AATATT | 1 cut(s) | 1606 |
| SspMI | CTAG | 5 cut(s) | 636, 948, 1053, 1629, 2289 |
| StuI | AGGCCT | 1 cut(s) | 1057 |
| StyD4I | CCNGG | 3 cut(s) | 711, 1953, 2312 |
| TaaI | ACNGT | 6 cut(s) | 183, 691, 1178, 1327, 1750, 2127 |
| TaqI | TCGA | 5 cut(s) | 272, 1404, 1500, 1774, 1836 |
| TatI | WGTACW | 3 cut(s) | 668, 2122, 2265 |
| TauI | GCSGC | 3 cut(s) | 253, 389, 1843 |
| TfiI | GAWTC | 9 cut(s) | 128, 274, 414, 610, 988, 1004, 1430, 1456, 1489 |
| Tru1I | TTAA | 9 cut(s) | 188, 543, 1029, 1041, 1395, 1548, 1707, 2100, 2325 |
| Tru9I | TTAA | 9 cut(s) | 188, 543, 1029, 1041, 1395, 1548, 1707, 2100, 2325 |
| TscAI | CASTG | 4 cut(s) | 1346, 1444, 1765, 2074 |
| TseFI | GTSAC | 3 cut(s) | 62, 1964, 2133 |
| TseI | GCWGC | 5 cut(s) | 311, 969, 2030, 2033, 2162 |
| Tsp45I | GTSAC | 3 cut(s) | 62, 1964, 2133 |
| TspRI | CASTG | 4 cut(s) | 1346, 1444, 1765, 2074 |
| VpaK11BI | GGWCC | 1 cut(s) | 1906 |
| VspI | ATTAAT | 2 cut(s) | 543, 1548 |
| XapI | RAATTY | 8 cut(s) | 164, 236, 436, 1101, 1162, 1409, 1657, 2295 |
| XceI | RCATGY | 2 cut(s) | 886, 2147 |
| XmiI | GTMKAC | 1 cut(s) | 706 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1335 |
| XspI | CTAG | 5 cut(s) | 636, 948, 1053, 1629, 2289 |
| ZrmI | AGTACT | 1 cut(s) | 670 |
| Zsp2I | ATGCAT | 1 cut(s) | 936 |