Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0016291

Physical Location & Seq

Genomic Coordinates Forward (+)

10071224 .. 10074230

Gene Structure 3007 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00289440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGAAGATTACCATCGGAAAAGTGGAAGCAAGCCGAACTGAACTGCAGAACTGTTGCAGAACTGGACTGCAGAACTGCTGCAGAAATGGACTGCAGGAACTGCTGCGAAATGGACTGCGGGAACTGCTGCAGAGAAATGGACTGCAGGAACTGCTGCAGAAATGGACTGCAGGAAATGCTGCAGAGCGGACTGCGGGAACTGCTGCAGAAATGGACTGCGAGGAACTGCTGCAGAAATGGACTGCGGGAACTGCTGCAGAAATGGACTGCAGGAACTGCTGCAGAAATGGACTGCGAGGAACTGCTGCGAACTGGACTGCAGAAATGCTGCAGAGCGGGACTGCGAGGAACTGCTGCAGAAATGGACTGCAGGAACTGCTGCAGAAATGGACTGCAGGAACTGCTGCAGAAATGGACTGCGGGAAGAACGATGAAGGAGCCATGGAACTTGTTGCTGCTTCTTGGGTTCACCGCAATCTCCAGCAAGCCAAGTTGATAACCCACCGAAGTTTGGCTCTCTCCGTCGCCGTCGTCAAACACCGAGTCGATTCCGCTGCAACCAAGGCTTCTTCATCACTTATTCATGCCGATAATGGTATTATTTGTAAAACGCCTGTTGATAGTGATTTGAATTTGTCTTCCATTGATGTGATATTGGGATTTTGTGATAATGCTAGTATGAATCATGTTGTGGGCAGTACACCTATTGATTCAATTGCTACATTAGTTTGTGGTGATAAAAGTATGGAAGTCGTGGGTGGTGTTAATACTAGTTGGAATAATGATAAAAGCGAACGATCTCATTCTATATGTGCTCAAACCGAGAATATAAATGTGCAGAAATCAAAGGAACTCTTGCACGGTTTTCCTTGTCAAAAAGAGTATAATATGAGATCTAAAGAAGATTCGATGTTGAAATTGAGGGTGAAAGGCTTCATCTCCAACGAGGACCATACTTGTCCCGATTGTAACATTGAGCAGCGGATAACGACGACGGATGAATTTGACAAAGAAAAGTTTGCTCGCTTTATCGAATTTGCAAGTTTGGGGCATTTTGATAAGGCAAAAGGAATACTATATGATGTAACTAACCGTTGTTTTGACTCCATCATGATTATTGATAATGGCTTCTTGAATGGTAATATTGGTGAAGAGAATTTGTGTGCTGGAGACAAAGGTGAAAAAATGCCGGTGACTTCGAAATGGTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000712 GO:0005575 GO:0005911 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0030054 GO:0034641 GO:0035825 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0045132 GO:0046483 GO:0048285 GO:0051304 GO:0051307 GO:0051321 GO:0055044 GO:0061982 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

403

Amino Acids

44.37

Weight (kDa)

5.92

Isoelectric Point (pI)

36.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016291)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g30941 FvH4_5g02451 FvH4_5g17361 FvH4_5g17362
rosa_chinensis	RchiOBHm_Chr1g0383661 RchiOBHm_Chr4g0407001 RchiOBHm_Chr5g0029671
rosa_multiflora	Rmu_sc0000665.1_g000017 Rmu_sc0011574.1_g000005 Rmu_sc0011574.1_g000006 Rmu_ssc0000135.1_g000005
rosa_roxburghii	Rroxscaffold_3G00256940 Rroxscaffold_4G00289440 Rroxscaffold_7G00179290
rosa_rugosa	Rorug04G0076400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	187, 336
AciI	CCGC	9 cut(s)	118, 187, 194, 245, 336, 420, 472, 552, 982
AcsI	RAATTY	4 cut(s)	631, 1001, 1034, 1156
AfaI	GTAC	1 cut(s)	700
AfiI	CCNNNNNNNGG	1 cut(s)	511
AgsI	TTSAA	4 cut(s)	631, 714, 916, 1135
AhlI	ACTAGT	1 cut(s)	770
Alw21I	GWGCWC	1 cut(s)	817
Alw26I	GTCTC	1 cut(s)	1164
AlwNI	CAGNNNCTG	5 cut(s)	100, 151, 276, 376, 401
ApoI	RAATTY	4 cut(s)	631, 1001, 1034, 1156
ArsI	GACNNNNNNTTYG	2 cut(s)	528, 560
Asp700I	GAANNNNTTC	1 cut(s)	932
AspS9I	GGNCC	1 cut(s)	949
AsuHPI	GGTGA	6 cut(s)	461, 746, 937, 1160, 1190, 1204
AsuII	TTCGAA	1 cut(s)	1199
AvaII	GGWCC	1 cut(s)	949
BbsI	GAAGAC	1 cut(s)	630
Bbv12I	GWGCWC	1 cut(s)	817
BccI	CCATC	2 cut(s)	20, 1115
BceAI	ACGGC	1 cut(s)	512
BcgI	CGANNNNNNTGC	2 cut(s)	536, 570
BcoDI	GTCTC	1 cut(s)	1164
BcuI	ACTAGT	1 cut(s)	770
BfaI	CTAG	3 cut(s)	675, 771, 1210
BglII	AGATCT	1 cut(s)	893
Bme18I	GGWCC	1 cut(s)	949
BmgT120I	GGNCC	1 cut(s)	949
BmiI	GGNNCC	1 cut(s)	439
BpiI	GAAGAC	1 cut(s)	630
BpmI	CTGGAG	2 cut(s)	464, 1188
Bpu14I	TTCGAA	1 cut(s)	1199
BsaBI	GATNNNNATC	1 cut(s)	11
BsaJI	CCNNGG	2 cut(s)	441, 561
Bsc4I	CCNNNNNNNGG	1 cut(s)	511
Bse118I	RCCGGY	1 cut(s)	1189
Bse1I	ACTGG	2 cut(s)	67, 317
Bse8I	GATNNNNATC	1 cut(s)	11
BseDI	CCNNGG	2 cut(s)	441, 561
BseGI	GGATG	1 cut(s)	1003
BseJI	GATNNNNATC	1 cut(s)	11
BseLI	CCNNNNNNNGG	1 cut(s)	511
BseNI	ACTGG	2 cut(s)	67, 317
BsgI	GTGCAG	1 cut(s)	857
BsiHKAI	GWGCWC	1 cut(s)	817
BsiSI	CCGG	1 cut(s)	1190
BslFI	GGGAC	2 cut(s)	352, 945
BslI	CCNNNNNNNGG	1 cut(s)	511
BsmAI	GTCTC	1 cut(s)	1164
BsmFI	GGGAC	2 cut(s)	352, 945
Bsp119I	TTCGAA	1 cut(s)	1199
Bsp1286I	GDGCHC	1 cut(s)	817
Bsp143I	GATC	2 cut(s)	797, 893
Bsp19I	CCATGG	1 cut(s)	441
BspACI	CCGC	9 cut(s)	118, 187, 194, 245, 336, 420, 472, 552, 982
BspHI	TCATGA	1 cut(s)	1110
BspLI	GGNNCC	1 cut(s)	439
BspT104I	TTCGAA	1 cut(s)	1199
BsrBI	CCGCTC	2 cut(s)	187, 336
BsrFI	RCCGGY	1 cut(s)	1189
BsrI	ACTGG	2 cut(s)	67, 317
BssAI	RCCGGY	1 cut(s)	1189
BssECI	CCNNGG	2 cut(s)	441, 561
BssMI	GATC	2 cut(s)	797, 893
BssT1I	CCWWGG	2 cut(s)	441, 561
Bst4CI	ACNGT	3 cut(s)	53, 863, 1094
Bst6I	CTCTTC	1 cut(s)	1146
BstAPI	GCANNNNNTGC	6 cut(s)	100, 151, 176, 276, 376, 401
BstBI	TTCGAA	1 cut(s)	1199
BstC8I	GCNNGC	3 cut(s)	31, 486, 1024
BstDSI	CCRYGG	1 cut(s)	441
BstF5I	GGATG	1 cut(s)	1003
BstKTI	GATC	2 cut(s)	800, 896
BstMAI	GTCTC	1 cut(s)	1164
BstMBI	GATC	2 cut(s)	797, 893
BstV2I	GAAGAC	1 cut(s)	630
BstX2I	RGATCY	1 cut(s)	893
BstYI	RGATCY	1 cut(s)	893
BtgI	CCRYGG	1 cut(s)	441
BtsCI	GGATG	1 cut(s)	1003
Cac8I	GCNNGC	3 cut(s)	31, 486, 1024
CaiI	CAGNNNCTG	5 cut(s)	100, 151, 276, 376, 401
CciI	TCATGA	1 cut(s)	1110
Cfr10I	RCCGGY	1 cut(s)	1189
Cfr13I	GGNCC	1 cut(s)	949
Csp6I	GTAC	1 cut(s)	699
CviAII	CATG	4 cut(s)	442, 584, 686, 1111
CviJI	RGCY	7 cut(s)	33, 440, 488, 515, 566, 933, 1128
CviKI_1	RGCY	7 cut(s)	33, 440, 488, 515, 566, 933, 1128
CviQI	GTAC	1 cut(s)	699
DpnI	GATC	2 cut(s)	799, 895
DpnII	GATC	2 cut(s)	797, 893
Eam1104I	CTCTTC	1 cut(s)	1146
EarI	CTCTTC	1 cut(s)	1146
Eco130I	CCWWGG	2 cut(s)	441, 561
Eco47I	GGWCC	1 cut(s)	949
EcoT14I	CCWWGG	2 cut(s)	441, 561
ErhI	CCWWGG	2 cut(s)	441, 561
FaeI	CATG	4 cut(s)	445, 587, 689, 1114
FalI	AAGNNNNNCTT	2 cut(s)	839, 871
FaqI	GGGAC	2 cut(s)	352, 945
FatI	CATG	4 cut(s)	441, 583, 685, 1110
FauI	CCCGC	5 cut(s)	111, 187, 238, 329, 413
FokI	GGATG	1 cut(s)	1010
FspBI	CTAG	3 cut(s)	675, 771, 1210
GsuI	CTGGAG	2 cut(s)	464, 1188
HapII	CCGG	1 cut(s)	1190
Hin1II	CATG	4 cut(s)	445, 587, 689, 1114
HinfI	GANTC	6 cut(s)	543, 548, 682, 710, 905, 1103
HpaII	CCGG	1 cut(s)	1190
HphI	GGTGA	6 cut(s)	461, 746, 937, 1160, 1190, 1204
Hpy166II	GTNNAC	2 cut(s)	469, 701
Hpy188I	TCNGA	1 cut(s)	17
Hpy188III	TCNNGA	3 cut(s)	962, 1111, 1132
Hpy8I	GTNNAC	2 cut(s)	469, 701
Hpy99I	CGWCG	4 cut(s)	527, 533, 994, 997
HpyAV	CCTTC	1 cut(s)	428
HpyCH4III	ACNGT	3 cut(s)	53, 863, 1094
Hsp92II	CATG	4 cut(s)	445, 587, 689, 1114
Kzo9I	GATC	2 cut(s)	797, 893
LmnI	GCTCC	1 cut(s)	437
MaeI	CTAG	3 cut(s)	675, 771, 1210
MaeIII	GTNAC	3 cut(s)	968, 1084, 1192
MalI	GATC	2 cut(s)	799, 895
MbiI	CCGCTC	2 cut(s)	187, 336
MboI	GATC	2 cut(s)	797, 893
MboII	GAAGA	6 cut(s)	16, 436, 561, 630, 914, 1163
MfeI	CAATTG	1 cut(s)	714
MflI	RGATCY	1 cut(s)	893
MhlI	GDGCHC	1 cut(s)	817
MluCI	AATT	6 cut(s)	631, 714, 917, 1001, 1034, 1156
MlyI	GAGTC	2 cut(s)	552, 1097
MmeI	TCCRAC	2 cut(s)	755, 966
MnlI	CCTC	5 cut(s)	214, 290, 339, 915, 940
MroXI	GAANNNNTTC	1 cut(s)	932
MseI	TTAA	1 cut(s)	765
MslI	CAYNNNNRTG	1 cut(s)	647
MspA1I	CMGCKG	2 cut(s)	554, 982
MspI	CCGG	1 cut(s)	1190
MunI	CAATTG	1 cut(s)	714
NcoI	CCATGG	1 cut(s)	441
NdeII	GATC	2 cut(s)	797, 893
NlaIII	CATG	4 cut(s)	445, 587, 689, 1114
NlaIV	GGNNCC	1 cut(s)	439
NmuCI	GTSAC	1 cut(s)	1192
NspV	TTCGAA	1 cut(s)	1199
PagI	TCATGA	1 cut(s)	1110
PdmI	GAANNNNTTC	1 cut(s)	932
PfeI	GAWTC	4 cut(s)	548, 682, 710, 905
PleI	GAGTC	2 cut(s)	551, 1097
PpsI	GAGTC	2 cut(s)	551, 1097
PspN4I	GGNNCC	1 cut(s)	439
PspPI	GGNCC	1 cut(s)	949
PstNI	CAGNNNCTG	5 cut(s)	100, 151, 276, 376, 401
PsuI	RGATCY	1 cut(s)	893
RsaI	GTAC	1 cut(s)	700
RsaNI	GTAC	1 cut(s)	699
RseI	CAYNNNNRTG	1 cut(s)	647
SaqAI	TTAA	1 cut(s)	765
Sau3AI	GATC	2 cut(s)	797, 893
Sau96I	GGNCC	1 cut(s)	949
SchI	GAGTC	2 cut(s)	552, 1097
SduI	GDGCHC	1 cut(s)	817
SetI	ASST	2 cut(s)	706, 1180
SfuI	TTCGAA	1 cut(s)	1199
SinI	GGWCC	1 cut(s)	949
SmiMI	CAYNNNNRTG	1 cut(s)	647
SpeI	ACTAGT	1 cut(s)	770
Sse9I	AATT	6 cut(s)	631, 714, 917, 1001, 1034, 1156
SsiI	CCGC	9 cut(s)	118, 187, 194, 245, 336, 420, 472, 552, 982
SspI	AATATT	1 cut(s)	1144
SspMI	CTAG	3 cut(s)	675, 771, 1210
StyI	CCWWGG	2 cut(s)	441, 561
TaaI	ACNGT	3 cut(s)	53, 863, 1094
TaqI	TCGA	4 cut(s)	546, 908, 1032, 1199
TasI	AATT	6 cut(s)	631, 714, 917, 1001, 1034, 1156
TatI	WGTACW	1 cut(s)	698
TfiI	GAWTC	4 cut(s)	548, 682, 710, 905
Tru1I	TTAA	1 cut(s)	765
Tru9I	TTAA	1 cut(s)	765
TseFI	GTSAC	1 cut(s)	1192
Tsp45I	GTSAC	1 cut(s)	1192
TspDTI	ATGAA	7 cut(s)	17, 447, 561, 572, 695, 925, 1014
TspGWI	ACGGA	2 cut(s)	511, 1010
VpaK11BI	GGWCC	1 cut(s)	949
XapI	RAATTY	4 cut(s)	631, 1001, 1034, 1156
XcmI	CCANNNNNNNNNTGG	1 cut(s)	19
XmnI	GAANNNNTTC	1 cut(s)	932
XspI	CTAG	3 cut(s)	675, 771, 1210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.