Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0016291

Physical Location & Seq

Genomic Coordinates Reverse (-)

11707640 .. 11708261

Gene Structure 622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0076400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGATGGTTCAATGTCAGTGGCTCTATTCATGCATCTATAGAGAGAAGCTGCGCAAAAAGTTCTGTTTACCCGACCAGCCATGTTGTGATTGTTGCGTGCATTTCAGCTGCGAATTATGTGCCCTTTGTCAAGAGCATGCCGAGCTCAAAGCTAGAGGTTTTGATCCCTCCAAAGGTTGGAGTGGGCGACCAAATGCCCTTCCAAAGATGCATTTCTCCATGTTTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0008150 GO:0008152 GO:0009856 GO:0009987 GO:0022414 GO:0022900 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048856 GO:0048868 GO:0051704 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fer2

Protein Analysis

76

Amino Acids

8.91

Weight (kDa)

8.57

Isoelectric Point (pI)

39.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLAC8	PF04749	2 - 48	5e-13	PLAC8 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016291)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g30941 FvH4_5g02451 FvH4_5g17361 FvH4_5g17362
rosa_chinensis	RchiOBHm_Chr1g0383661 RchiOBHm_Chr4g0407001 RchiOBHm_Chr5g0029671
rosa_multiflora	Rmu_sc0000665.1_g000017 Rmu_sc0011574.1_g000005 Rmu_sc0011574.1_g000006 Rmu_ssc0000135.1_g000005
rosa_roxburghii	Rroxscaffold_3G00256940 Rroxscaffold_4G00289440 Rroxscaffold_7G00179290
rosa_rugosa	Rorug04G0076400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	53
AccB7I	CCANNNNNTGG	1 cut(s)	177
AclWI	GGATC	1 cut(s)	158
AfiI	CCNNNNNNNGG	2 cut(s)	173, 177
AgsI	TTSAA	1 cut(s)	11
AluBI	AGCT	4 cut(s)	49, 108, 145, 152
AluI	AGCT	4 cut(s)	49, 108, 145, 152
Alw21I	GWGCWC	1 cut(s)	147
AlwI	GGATC	1 cut(s)	158
ApeKI	GCWGC	2 cut(s)	49, 108
AspLEI	GCGC	1 cut(s)	54
BaeGI	GKGCMC	1 cut(s)	124
BanII	GRGCYC	1 cut(s)	147
Bbv12I	GWGCWC	1 cut(s)	147
BbvI	GCAGC	2 cut(s)	36, 95
BcgI	CGANNNNNNTGC	2 cut(s)	101, 135
BfaI	CTAG	1 cut(s)	153
BfmI	CTRYAG	1 cut(s)	37
BisI	GCNGC	2 cut(s)	50, 109
BlsI	GCNGC	2 cut(s)	51, 110
BmsI	GCATC	2 cut(s)	42, 198
Bsc4I	CCNNNNNNNGG	2 cut(s)	173, 177
BseLI	CCNNNNNNNGG	2 cut(s)	173, 177
BseSI	GKGCMC	1 cut(s)	124
BseXI	GCAGC	2 cut(s)	36, 95
BsiHKAI	GWGCWC	1 cut(s)	147
BslI	CCNNNNNNNGG	2 cut(s)	173, 177
Bsp1286I	GDGCHC	2 cut(s)	124, 147
Bsp143I	GATC	1 cut(s)	163
BspPI	GGATC	1 cut(s)	158
BssMI	GATC	1 cut(s)	163
BstC8I	GCNNGC	2 cut(s)	98, 138
BstHHI	GCGC	1 cut(s)	54
BstKTI	GATC	1 cut(s)	166
BstMBI	GATC	1 cut(s)	163
BstMWI	GCNNNNNNNGC	1 cut(s)	142
BstNSI	RCATGY	1 cut(s)	140
BstSFI	CTRYAG	1 cut(s)	37
BstSLI	GKGCMC	1 cut(s)	124
BstV1I	GCAGC	2 cut(s)	36, 95
BtsIMutI	CAGTG	1 cut(s)	23
Cac8I	GCNNGC	2 cut(s)	98, 138
CfoI	GCGC	1 cut(s)	54
CspCI	CAANNNNNGTGG	1 cut(s)	34
CviAII	CATG	4 cut(s)	30, 81, 137, 220
CviJI	RGCY	6 cut(s)	22, 49, 79, 108, 145, 152
CviKI_1	RGCY	6 cut(s)	22, 49, 79, 108, 145, 152
DpnI	GATC	1 cut(s)	165
DpnII	GATC	1 cut(s)	163
DraI	TTTAAA	1 cut(s)	226
Ecl136II	GAGCTC	1 cut(s)	145
Eco24I	GRGCYC	1 cut(s)	147
Eco53kI	GAGCTC	1 cut(s)	145
EcoICRI	GAGCTC	1 cut(s)	145
EcoT22I	ATGCAT	2 cut(s)	35, 213
EcoT38I	GRGCYC	1 cut(s)	147
FaeI	CATG	4 cut(s)	33, 84, 140, 223
FaiI	YATR	6 cut(s)	31, 39, 82, 118, 138, 221
FatI	CATG	4 cut(s)	29, 80, 136, 219
Fnu4HI	GCNGC	2 cut(s)	50, 109
FriOI	GRGCYC	1 cut(s)	147
Fsp4HI	GCNGC	2 cut(s)	50, 109
FspBI	CTAG	1 cut(s)	153
FspI	TGCGCA	1 cut(s)	53
GlaI	GCGC	1 cut(s)	53
GluI	GCNGC	2 cut(s)	50, 109
HhaI	GCGC	1 cut(s)	54
Hin1II	CATG	4 cut(s)	33, 84, 140, 223
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
Hpy166II	GTNNAC	1 cut(s)	68
Hpy188III	TCNNGA	1 cut(s)	131
Hpy8I	GTNNAC	1 cut(s)	68
HpyAV	CCTTC	1 cut(s)	209
HpyCH4V	TGCA	3 cut(s)	33, 100, 211
HpyF10VI	GCNNNNNNNGC	1 cut(s)	142
Hsp92II	CATG	4 cut(s)	33, 84, 140, 223
HspAI	GCGC	1 cut(s)	52
Kzo9I	GATC	1 cut(s)	163
LpnPI	CCDG	1 cut(s)	89
Lsp1109I	GCAGC	2 cut(s)	36, 95
LweI	GCATC	2 cut(s)	42, 198
MaeI	CTAG	1 cut(s)	153
MalI	GATC	1 cut(s)	165
MboI	GATC	1 cut(s)	163
MhlI	GDGCHC	2 cut(s)	124, 147
MluCI	AATT	1 cut(s)	113
MmeI	TCCRAC	1 cut(s)	158
MnlI	CCTC	2 cut(s)	149, 178
Mph1103I	ATGCAT	2 cut(s)	35, 213
MseI	TTAA	1 cut(s)	225
MspA1I	CMGCKG	1 cut(s)	108
MwoI	GCNNNNNNNGC	1 cut(s)	142
NdeII	GATC	1 cut(s)	163
NlaIII	CATG	4 cut(s)	33, 84, 140, 223
NmeAIII	GCCGAG	1 cut(s)	166
NsbI	TGCGCA	1 cut(s)	53
NsiI	ATGCAT	2 cut(s)	35, 213
NspI	RCATGY	1 cut(s)	140
PaeI	GCATGC	1 cut(s)	140
PflMI	CCANNNNNTGG	1 cut(s)	177
PkrI	GCNGC	2 cut(s)	51, 110
Psp124BI	GAGCTC	1 cut(s)	147
PvuII	CAGCTG	1 cut(s)	108
SacI	GAGCTC	1 cut(s)	147
SaqAI	TTAA	1 cut(s)	225
SatI	GCNGC	2 cut(s)	50, 109
Sau3AI	GATC	1 cut(s)	163
SduI	GDGCHC	2 cut(s)	124, 147
SetI	ASST	6 cut(s)	51, 110, 147, 154, 160, 178
SfaNI	GCATC	2 cut(s)	42, 198
SfcI	CTRYAG	1 cut(s)	37
SgeI	CNNG	9 cut(s)	42, 83, 88, 93, 109, 143, 149, 154, 165
SphI	GCATGC	1 cut(s)	140
Sse9I	AATT	1 cut(s)	113
SspMI	CTAG	1 cut(s)	153
SstI	GAGCTC	1 cut(s)	147
TasI	AATT	1 cut(s)	113
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TscAI	CASTG	1 cut(s)	23
TseI	GCWGC	2 cut(s)	49, 108
TspDTI	ATGAA	1 cut(s)	18
TspRI	CASTG	1 cut(s)	23
Van91I	CCANNNNNTGG	1 cut(s)	177
XceI	RCATGY	1 cut(s)	140
XspI	CTAG	1 cut(s)	153
Zsp2I	ATGCAT	2 cut(s)	35, 213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.