Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001934

Physical Location & Seq

Genomic Coordinates Reverse (-)

29901576 .. 29903392

Gene Structure 1817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g34450.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGATCACATCCAACGCCTCAATCAAAGCTGCCCCATCAAACTCAGATATCTTCAGAGAATACATAGGAGCTGAATTCAACGATGTCAAGTTTTCCGATGTGCCCATTAACCCAAATGTTGAGTTCCACTTCCTTCTCTCCTTCGCTATCGACTACGATACTTCAGGTTCTTCACCCACAAATGGAAATTTCAATGTGTTTTGGGACACTGACAACCTCGGCGCCTCACAAGTTTCGGACATCAAGAATGCACATTCAAATGTGAAAGTTGGCCTAAGCTTAGGAGGGGATAGTGTCAATAGTGGCTCCTGCTATTTTAACCCTTCCTCAGTTGATTCATGGGTTTCTAATGCTGTTTCTTCACTCACAAGTATCATCCAACAGTACAATCTAGATGGTATTGACATTGATTACGAGCACTTTCAATCCGATCCTGATACCTTTTCTGAGTGCATTGGTAGGCTTATAAAAACTCTCAAGGACAATGGTGTGATCAAGTTTGCTTCCATTGCTCCGTTTGATGATGACGACGTTCAGAGCCACTACTTGGCTTTGTGGAAGAACTATGGCCAGTTGATAGACTATGTGAACTTCCAGTTCTATGCTTATGATCAGAGCACCACAGTGTCTCAGTTTATAGATTATTTCAAGACTCAAAGCTCAAACTACAATGGTGGAAAGGTCTTAGCGAGCTTTAGTACCGATGGGAGTGGTGGATTGTCCCCTGAAAATGGGTTTTTCACTGCCTGCAACAGGCTCAAGAGTGAACAAAACCTTAATGGTATTTTTGTTTGGTCTGCTGATGATTCCAAGAAAAATGGTTTCCGCTATGAAAAGCAATCCCAAGCTCTTTTGGCCATTCCACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

290

Amino Acids

31.92

Weight (kDa)

4.47

Isoelectric Point (pI)

30.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_18	PF00704	66 - 206	5e-14	Glycosyl hydrolases family 18
TIM-barrel_EndoS	PF23916	117 - 218	8.4e-07	Endo-beta-N-acetylglucosaminidase EndoS TIM-barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001934)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34450 FvH4_6g05690 FvH4_6g27980
malus_domestica	MD03G1105600.v1.1 MD11G1118100.v1.1
prunus_persica	Prupe.4G164000_v2.0.a1 Prupe.6G088400_v2.0.a1
pyrus_communis	pycom11g07790 pycom11g09900
rosa_chinensis	RchiOBHm_Chr3g0454591 RchiOBHm_Chr5g0062101 RchiOBHm_Chr5g0062131 RchiOBHm_Chr5g0062171
rosa_laevigata	RLG00000025431 RLG00000035531 RLG00000035534 RLG00000035538
rosa_multiflora	Rmu_sc0001792.1_g000040 Rmu_sc0002296.1_g000014 Rmu_sc0002296.1_g000017 Rmu_sc0002296.1_g000019 Rmu_sc0009685.1_g000002 Rmu_sc0009685.1_g000009
rosa_roxburghii	Rroxscaffold_1G00018540 Rroxscaffold_1G00018570 Rroxscaffold_1G00018600 Rroxscaffold_1G00018620 Rroxscaffold_6G00424950
rosa_rugosa	Rorug03G0000400 Rorug05G0346000 Rorug05G0346200
rosa_samantha	Rh3AG060200 Rh3BG062300 Rh3CG061100 Rh3DG061900 Rh5BG420900 Rh5BG421100 Rh5CG444900 Rh5CG445200 Rh5DG436000 Rh5DG436100 Rh5DG436200
rosa_wichuraiana	Rw3G004680 Rw5G038380 Rw5G038390 Rw5G038400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	467
AccB1I	GGYRCC	1 cut(s)	221
AccB7I	CCANNNNNTGG	1 cut(s)	547
AciI	CCGC	1 cut(s)	826
AclWI	GGATC	1 cut(s)	425
AcoI	YGGCCR	2 cut(s)	568, 855
AcsI	RAATTY	2 cut(s)	74, 187
AcuI	CTGAAG	2 cut(s)	37, 147
AcyI	GRCGYC	1 cut(s)	222
AfaI	GTAC	2 cut(s)	386, 700
AfiI	CCNNNNNNNGG	4 cut(s)	182, 547, 731, 753
AgsI	TTSAA	5 cut(s)	79, 193, 258, 425, 649
AleI	CACNNNNGTG	1 cut(s)	623
AluBI	AGCT	6 cut(s)	29, 71, 279, 660, 693, 848
AluI	AGCT	6 cut(s)	29, 71, 279, 660, 693, 848
Alw21I	GWGCWC	2 cut(s)	420, 620
Alw26I	GTCTC	1 cut(s)	633
AlwI	GGATC	1 cut(s)	425
AoxI	GGCC	3 cut(s)	271, 568, 855
ApeKI	GCWGC	1 cut(s)	29
ApoI	RAATTY	2 cut(s)	74, 187
AspLEI	GCGC	1 cut(s)	224
AsuHPI	GGTGA	1 cut(s)	165
BaeGI	GKGCMC	1 cut(s)	105
BalI	TGGCCA	2 cut(s)	570, 857
BanI	GGYRCC	1 cut(s)	221
Bbv12I	GWGCWC	2 cut(s)	420, 620
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	3 cut(s)	43, 389, 698
BclI	TGATCA	3 cut(s)	3, 492, 610
BcoDI	GTCTC	1 cut(s)	633
BfaI	CTAG	1 cut(s)	392
BfoI	RGCGCY	1 cut(s)	225
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
BmiI	GGNNCC	2 cut(s)	223, 307
Bpu10I	CCTNAGC	2 cut(s)	275, 280
BpuEI	CTTGAG	2 cut(s)	461, 743
BsaHI	GRCGYC	1 cut(s)	222
BsaJI	CCNNGG	1 cut(s)	217
Bsc4I	CCNNNNNNNGG	4 cut(s)	182, 547, 731, 753
Bse1I	ACTGG	2 cut(s)	571, 595
Bse3DI	GCAATG	1 cut(s)	507
BseDI	CCNNGG	1 cut(s)	217
BseGI	GGATG	2 cut(s)	8, 375
BseLI	CCNNNNNNNGG	4 cut(s)	182, 547, 731, 753
BseMI	GCAATG	1 cut(s)	507
BseMII	CTCAG	4 cut(s)	57, 342, 438, 644
BseNI	ACTGG	2 cut(s)	571, 595
BseSI	GKGCMC	1 cut(s)	105
BseXI	GCAGC	1 cut(s)	16
BshFI	GGCC	3 cut(s)	273, 570, 857
BshNI	GGYRCC	1 cut(s)	221
BsiHKAI	GWGCWC	2 cut(s)	420, 620
BslFI	GGGAC	2 cut(s)	218, 706
BslI	CCNNNNNNNGG	4 cut(s)	182, 547, 731, 753
BsmAI	GTCTC	1 cut(s)	633
BsmFI	GGGAC	2 cut(s)	218, 706
BsmI	GAATGC	1 cut(s)	253
BsnI	GGCC	3 cut(s)	273, 570, 857
Bsp1286I	GDGCHC	3 cut(s)	105, 420, 620
Bsp143I	GATC	4 cut(s)	3, 430, 492, 610
BspACI	CCGC	1 cut(s)	826
BspANI	GGCC	3 cut(s)	273, 570, 857
BspCNI	CTCAG	4 cut(s)	56, 341, 439, 643
BspLI	GGNNCC	2 cut(s)	223, 307
BspPI	GGATC	1 cut(s)	425
BspT107I	GGYRCC	1 cut(s)	221
BsrDI	GCAATG	1 cut(s)	507
BsrI	ACTGG	2 cut(s)	571, 595
BssECI	CCNNGG	1 cut(s)	217
BssMI	GATC	4 cut(s)	3, 430, 492, 610
BssNI	GRCGYC	1 cut(s)	222
Bst4CI	ACNGT	2 cut(s)	384, 625
BstACI	GRCGYC	1 cut(s)	222
BstC8I	GCNNGC	2 cut(s)	691, 748
BstDEI	CTNAG	7 cut(s)	43, 275, 280, 328, 447, 630, 685
BstENI	CCTNNNNNAGG	1 cut(s)	751
BstF5I	GGATG	2 cut(s)	8, 375
BstH2I	RGCGCY	1 cut(s)	225
BstHHI	GCGC	1 cut(s)	224
BstKTI	GATC	4 cut(s)	6, 433, 495, 613
BstMAI	GTCTC	1 cut(s)	633
BstMBI	GATC	4 cut(s)	3, 430, 492, 610
BstMWI	GCNNNNNNNGC	2 cut(s)	509, 854
BstSLI	GKGCMC	1 cut(s)	105
BstV1I	GCAGC	1 cut(s)	16
BsuRI	GGCC	3 cut(s)	273, 570, 857
BtsCI	GGATG	2 cut(s)	8, 375
BtsI	GCAGTG	1 cut(s)	741
BtsIMutI	CAGTG	3 cut(s)	207, 630, 741
Cac8I	GCNNGC	2 cut(s)	691, 748
CfoI	GCGC	1 cut(s)	224
Csp6I	GTAC	2 cut(s)	385, 699
CviAII	CATG	1 cut(s)	339
CviQI	GTAC	2 cut(s)	385, 699
DdeI	CTNAG	7 cut(s)	43, 275, 280, 328, 447, 630, 685
DinI	GGCGCC	1 cut(s)	223
DpnI	GATC	4 cut(s)	5, 432, 494, 612
DpnII	GATC	4 cut(s)	3, 430, 492, 610
EaeI	YGGCCR	2 cut(s)	568, 855
Eco32I	GATATC	1 cut(s)	49
Eco57I	CTGAAG	2 cut(s)	37, 147
EcoNI	CCTNNNNNAGG	1 cut(s)	751
EcoRI	GAATTC	1 cut(s)	74
EcoRV	GATATC	1 cut(s)	49
EgeI	GGCGCC	1 cut(s)	223
EheI	GGCGCC	1 cut(s)	223
FaeI	CATG	1 cut(s)	342
FaiI	YATR	9 cut(s)	65, 340, 467, 567, 585, 603, 609, 638, 831
FaqI	GGGAC	2 cut(s)	218, 706
FatI	CATG	1 cut(s)	338
FbaI	TGATCA	3 cut(s)	3, 492, 610
Fnu4HI	GCNGC	1 cut(s)	30
FokI	GGATG	1 cut(s)	362
Fsp4HI	GCNGC	1 cut(s)	30
FspBI	CTAG	1 cut(s)	392
GlaI	GCGC	1 cut(s)	223
GluI	GCNGC	1 cut(s)	30
HaeII	RGCGCY	1 cut(s)	225
HaeIII	GGCC	3 cut(s)	273, 570, 857
HhaI	GCGC	1 cut(s)	224
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	1 cut(s)	342
Hin6I	GCGC	1 cut(s)	222
HinP1I	GCGC	1 cut(s)	222
HindIII	AAGCTT	1 cut(s)	277
HinfI	GANTC	3 cut(s)	335, 652, 806
HphI	GGTGA	1 cut(s)	165
Hpy166II	GTNNAC	2 cut(s)	589, 767
Hpy188I	TCNGA	8 cut(s)	46, 56, 97, 238, 430, 448, 537, 615
Hpy188III	TCNNGA	5 cut(s)	244, 392, 434, 649, 760
Hpy8I	GTNNAC	2 cut(s)	589, 767
Hpy99I	CGWCG	1 cut(s)	533
HpyAV	CCTTC	3 cut(s)	143, 151, 333
HpyCH4III	ACNGT	2 cut(s)	384, 625
HpyCH4IV	ACGT	1 cut(s)	531
HpyCH4V	TGCA	3 cut(s)	251, 453, 750
HpyF10VI	GCNNNNNNNGC	2 cut(s)	509, 854
HpyF3I	CTNAG	7 cut(s)	43, 275, 280, 328, 447, 630, 685
HpySE526I	ACGT	1 cut(s)	531
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	1 cut(s)	342
HspAI	GCGC	1 cut(s)	222
KasI	GGCGCC	1 cut(s)	221
Ksp22I	TGATCA	3 cut(s)	3, 492, 610
Kzo9I	GATC	4 cut(s)	3, 430, 492, 610
LmnI	GCTCC	3 cut(s)	68, 311, 517
LpnPI	CCDG	8 cut(s)	150, 322, 447, 584, 608, 738, 739, 760
Lsp1109I	GCAGC	1 cut(s)	16
MaeI	CTAG	1 cut(s)	392
MaeII	ACGT	1 cut(s)	531
MalI	GATC	4 cut(s)	5, 432, 494, 612
MboI	GATC	4 cut(s)	3, 430, 492, 610
MboII	GAAGA	4 cut(s)	43, 162, 351, 571
MhlI	GDGCHC	3 cut(s)	105, 420, 620
MlsI	TGGCCA	2 cut(s)	570, 857
MluCI	AATT	2 cut(s)	74, 187
MluNI	TGGCCA	2 cut(s)	570, 857
Mly113I	GGCGCC	1 cut(s)	222
MlyI	GAGTC	1 cut(s)	646
MmeI	TCCRAC	2 cut(s)	36, 403
MnlI	CCTC	5 cut(s)	28, 227, 235, 278, 337
Mox20I	TGGCCA	2 cut(s)	570, 857
MscI	TGGCCA	2 cut(s)	570, 857
MseI	TTAA	3 cut(s)	108, 318, 777
MslI	CAYNNNNRTG	2 cut(s)	258, 623
Msp20I	TGGCCA	2 cut(s)	570, 857
Mva1269I	GAATGC	1 cut(s)	253
MwoI	GCNNNNNNNGC	2 cut(s)	509, 854
NarI	GGCGCC	1 cut(s)	222
NdeII	GATC	4 cut(s)	3, 430, 492, 610
NlaIII	CATG	1 cut(s)	342
NlaIV	GGNNCC	2 cut(s)	223, 307
NmeAIII	GCCGAG	1 cut(s)	198
OliI	CACNNNNGTG	1 cut(s)	623
PctI	GAATGC	1 cut(s)	253
PfeI	GAWTC	2 cut(s)	335, 806
PflMI	CCANNNNNTGG	1 cut(s)	547
PkrI	GCNGC	1 cut(s)	31
PleI	GAGTC	1 cut(s)	646
PluTI	GGCGCC	1 cut(s)	225
PpsI	GAGTC	1 cut(s)	646
PsiI	TTATAA	1 cut(s)	467
PspN4I	GGNNCC	2 cut(s)	223, 307
RsaI	GTAC	2 cut(s)	386, 700
RsaNI	GTAC	2 cut(s)	385, 699
RseI	CAYNNNNRTG	2 cut(s)	258, 623
SaqAI	TTAA	3 cut(s)	108, 318, 777
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	4 cut(s)	3, 430, 492, 610
SchI	GAGTC	1 cut(s)	646
SduI	GDGCHC	3 cut(s)	105, 420, 620
SfoI	GGCGCC	1 cut(s)	223
SmiMI	CAYNNNNRTG	2 cut(s)	258, 623
SmlI	CTYRAG	2 cut(s)	476, 758
SmoI	CTYRAG	2 cut(s)	476, 758
Sse9I	AATT	2 cut(s)	74, 187
SsiI	CCGC	1 cut(s)	826
SspDI	GGCGCC	1 cut(s)	221
SspMI	CTAG	1 cut(s)	392
TaaI	ACNGT	2 cut(s)	384, 625
TaiI	ACGT	1 cut(s)	534
TaqI	TCGA	1 cut(s)	150
TasI	AATT	2 cut(s)	74, 187
TatI	WGTACW	1 cut(s)	384
TfiI	GAWTC	2 cut(s)	335, 806
Tru1I	TTAA	3 cut(s)	108, 318, 777
Tru9I	TTAA	3 cut(s)	108, 318, 777
TscAI	CASTG	3 cut(s)	214, 630, 748
TseI	GCWGC	1 cut(s)	29
TspDTI	ATGAA	2 cut(s)	327, 846
TspGWI	ACGGA	1 cut(s)	504
TspRI	CASTG	3 cut(s)	214, 630, 748
Van91I	CCANNNNNTGG	1 cut(s)	547
XagI	CCTNNNNNAGG	1 cut(s)	751
XapI	RAATTY	2 cut(s)	74, 187
XbaI	TCTAGA	1 cut(s)	391
XspI	CTAG	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.