Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001934

Physical Location & Seq

Genomic Coordinates Forward (+)

46027779 .. 46029425

Gene Structure 1647 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00424950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGCAGTTTCAAAGCTGAAGCTTATGATCAGCCTTGTATTCATTCAAGCCCTCATCACTTCAATCCAAGCTGCCCCATCAAACTCAGATATATTCAGCGAATACATAGGAGCTGAATTCAAGAGTGTCAAGTTTGCCGATGTCCCCGTTAACCCAAATGTTAAGTTCCACTTCCTTCTCTCCTTTGCCATCGACTATGACACATTAGGTTCTTCACCCACCAATGGAAAATTCAACGTCTTTTGGGACACTGAGAACCTCGGCGCCTCTCAAGTTTCGGGCATCAAGAATGCACATTCAAATGTGAAAGTTGGCTTAAGCTTAGGAGGGGACAGTGTCGATGGTGGCTCTGCTTACTTCAACCCTTCCTCAGTTGATTCATGGGTTTCTAATGCTGTTTCTTCACTCACAAGTATCATCCAGCAGTACAATCTAGATGGGCTTGACATTGATTACGAGCACTTTAAATCTGATCCCAACACCTTTTCCGAGTGCATTGGAAGGCTTATAAAAACCCTCAAGGACAATGGTGTGATCAAGTTTGCTTCCATTGCTCCTTTTGATGACGATGACGTTCAGAGCCACTACTTGGCCTTGTGGAAGAACTACGGTCAGTTGATAGACTATGTGAACTTCCAGTTCTATGCATATGATCAGAGCACCACCGTGACTCAATTCATCAATTATTTCAAAAAGCAAAGCTCAAATTACAATGGTGGGAAGGTCTTAGCGAGCTTTAGCACCGATGGGAGTGGTGGATTGTCCCCTGAAAATGGGTTCTTCACTGCCTGCCATATGCTCAAGAGTGAACAAAACCTTCATGGTATCTTTGTTTGGTCTGCTGATGATTCCAAGAAAAATGATGCATACTGTCATTTCAAGACTGATAGCCAAGACCAAGCCGCAGAAGCTTTTCTTGATGCTGCACAGTGTCGCAACGAAAAGTGCCTTGCTTGCTTAGAGAAGGGAGCAAATCTCCTCTGTATAACTGGATCGCTTGAATCAACTGGAGTTTGTTACAAAGAAATTGCGAAGCTGAACAATTGTTCTGTGGAGGTCTTTGACAATATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

357

Amino Acids

39.16

Weight (kDa)

4.85

Isoelectric Point (pI)

30.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_18	PF00704	81 - 220	2.7e-13	Glycosyl hydrolases family 18
TIM-barrel_EndoS	PF23916	132 - 233	1.3e-06	Endo-beta-N-acetylglucosaminidase EndoS TIM-barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001934)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34450 FvH4_6g05690 FvH4_6g27980
malus_domestica	MD03G1105600.v1.1 MD11G1118100.v1.1
prunus_persica	Prupe.4G164000_v2.0.a1 Prupe.6G088400_v2.0.a1
pyrus_communis	pycom11g07790 pycom11g09900
rosa_chinensis	RchiOBHm_Chr3g0454591 RchiOBHm_Chr5g0062101 RchiOBHm_Chr5g0062131 RchiOBHm_Chr5g0062171
rosa_laevigata	RLG00000025431 RLG00000035531 RLG00000035534 RLG00000035538
rosa_multiflora	Rmu_sc0001792.1_g000040 Rmu_sc0002296.1_g000014 Rmu_sc0002296.1_g000017 Rmu_sc0002296.1_g000019 Rmu_sc0009685.1_g000002 Rmu_sc0009685.1_g000009
rosa_roxburghii	Rroxscaffold_1G00018540 Rroxscaffold_1G00018570 Rroxscaffold_1G00018600 Rroxscaffold_1G00018620 Rroxscaffold_6G00424950
rosa_rugosa	Rorug03G0000400 Rorug05G0346000 Rorug05G0346200
rosa_samantha	Rh3AG060200 Rh3BG062300 Rh3CG061100 Rh3DG061900 Rh5BG420900 Rh5BG421100 Rh5CG444900 Rh5CG445200 Rh5DG436000 Rh5DG436100 Rh5DG436200
rosa_wichuraiana	Rw3G004680 Rw5G038380 Rw5G038390 Rw5G038400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	509
AccB1I	GGYRCC	1 cut(s)	263
AccB7I	CCANNNNNTGG	1 cut(s)	589
AciI	CCGC	1 cut(s)	903
AclWI	GGATC	2 cut(s)	467, 1000
AcsI	RAATTY	2 cut(s)	116, 230
AcuI	CTGAAG	1 cut(s)	38
AcyI	GRCGYC	1 cut(s)	264
AfaI	GTAC	1 cut(s)	428
AfiI	CCNNNNNNNGG	3 cut(s)	224, 589, 773
AflII	CTTAAG	1 cut(s)	316
AjuI	GAANNNNNNNTTGG	2 cut(s)	215, 247
AleI	CACNNNNGTG	1 cut(s)	665
AluBI	AGCT	9 cut(s)	16, 22, 71, 113, 321, 702, 735, 911, 1036
AluI	AGCT	9 cut(s)	16, 22, 71, 113, 321, 702, 735, 911, 1036
Alw21I	GWGCWC	2 cut(s)	462, 662
AlwI	GGATC	2 cut(s)	467, 1000
AoxI	GGCC	1 cut(s)	591
ApeKI	GCWGC	2 cut(s)	71, 923
ApoI	RAATTY	2 cut(s)	116, 230
Asp700I	GAANNNNTTC	1 cut(s)	912
AspLEI	GCGC	1 cut(s)	266
AsuHPI	GGTGA	1 cut(s)	207
BanI	GGYRCC	1 cut(s)	263
Bbv12I	GWGCWC	2 cut(s)	462, 662
BbvI	GCAGC	2 cut(s)	58, 910
BccI	CCATC	5 cut(s)	85, 197, 335, 431, 740
BclI	TGATCA	3 cut(s)	27, 534, 652
BfaI	CTAG	1 cut(s)	434
BfoI	RGCGCY	1 cut(s)	267
BfrI	CTTAAG	1 cut(s)	316
BisI	GCNGC	3 cut(s)	72, 903, 924
BlsI	GCNGC	3 cut(s)	73, 904, 925
BmiI	GGNNCC	1 cut(s)	265
BmsI	GCATC	3 cut(s)	291, 853, 910
BplI	GAGNNNNNCTC	2 cut(s)	960, 992
BpmI	CTGGAG	1 cut(s)	1029
Bpu10I	CCTNAGC	1 cut(s)	322
BpuEI	CTTGAG	3 cut(s)	255, 503, 785
BsaHI	GRCGYC	1 cut(s)	264
BsaJI	CCNNGG	1 cut(s)	259
Bsc4I	CCNNNNNNNGG	3 cut(s)	224, 589, 773
Bse1I	ACTGG	3 cut(s)	637, 994, 1012
Bse3DI	GCAATG	1 cut(s)	549
BseDI	CCNNGG	1 cut(s)	259
BseGI	GGATG	1 cut(s)	417
BseLI	CCNNNNNNNGG	3 cut(s)	224, 589, 773
BseMI	GCAATG	1 cut(s)	549
BseMII	CTCAG	3 cut(s)	99, 243, 384
BseNI	ACTGG	3 cut(s)	637, 994, 1012
BseRI	GAGGAG	1 cut(s)	968
BseXI	GCAGC	2 cut(s)	58, 910
BsgI	GTGCAG	1 cut(s)	909
BshFI	GGCC	1 cut(s)	593
BshNI	GGYRCC	1 cut(s)	263
BsiHKAI	GWGCWC	2 cut(s)	462, 662
BslFI	GGGAC	4 cut(s)	128, 260, 344, 748
BslI	CCNNNNNNNGG	3 cut(s)	224, 589, 773
BsmFI	GGGAC	4 cut(s)	128, 260, 344, 748
BsmI	GAATGC	1 cut(s)	295
BsnI	GGCC	1 cut(s)	593
Bsp1286I	GDGCHC	2 cut(s)	462, 662
Bsp143I	GATC	5 cut(s)	27, 472, 534, 652, 992
BspACI	CCGC	1 cut(s)	903
BspANI	GGCC	1 cut(s)	593
BspCNI	CTCAG	3 cut(s)	98, 244, 383
BspLI	GGNNCC	1 cut(s)	265
BspPI	GGATC	2 cut(s)	467, 1000
BspT107I	GGYRCC	1 cut(s)	263
BspTI	CTTAAG	1 cut(s)	316
BsrDI	GCAATG	1 cut(s)	549
BsrI	ACTGG	3 cut(s)	637, 994, 1012
BssECI	CCNNGG	1 cut(s)	259
BssMI	GATC	5 cut(s)	27, 472, 534, 652, 992
BssNI	GRCGYC	1 cut(s)	264
Bst4CI	ACNGT	5 cut(s)	335, 611, 667, 872, 930
BstACI	GRCGYC	1 cut(s)	264
BstAFI	CTTAAG	1 cut(s)	316
BstC8I	GCNNGC	3 cut(s)	733, 790, 955
BstDEI	CTNAG	6 cut(s)	85, 252, 322, 370, 727, 958
BstF5I	GGATG	1 cut(s)	417
BstH2I	RGCGCY	1 cut(s)	267
BstHHI	GCGC	1 cut(s)	266
BstKTI	GATC	5 cut(s)	30, 475, 537, 655, 995
BstMBI	GATC	5 cut(s)	27, 472, 534, 652, 992
BstMWI	GCNNNNNNNGC	3 cut(s)	551, 908, 954
BstV1I	GCAGC	2 cut(s)	58, 910
BsuRI	GGCC	1 cut(s)	593
BtsCI	GGATG	1 cut(s)	417
BtsI	GCAGTG	1 cut(s)	783
BtsIMutI	CAGTG	4 cut(s)	249, 340, 783, 935
Cac8I	GCNNGC	3 cut(s)	733, 790, 955
CfoI	GCGC	1 cut(s)	266
Csp6I	GTAC	1 cut(s)	427
CviAII	CATG	2 cut(s)	381, 821
CviQI	GTAC	1 cut(s)	427
DdeI	CTNAG	6 cut(s)	85, 252, 322, 370, 727, 958
DinI	GGCGCC	1 cut(s)	265
DpnI	GATC	5 cut(s)	29, 474, 536, 654, 994
DpnII	GATC	5 cut(s)	27, 472, 534, 652, 992
DraI	TTTAAA	1 cut(s)	466
Eco57I	CTGAAG	1 cut(s)	38
EcoRI	GAATTC	1 cut(s)	116
EcoT22I	ATGCAT	2 cut(s)	649, 868
EgeI	GGCGCC	1 cut(s)	265
EheI	GGCGCC	1 cut(s)	265
FaeI	CATG	2 cut(s)	384, 824
FalI	AAGNNNNNCTT	4 cut(s)	155, 187, 900, 932
FaqI	GGGAC	4 cut(s)	128, 260, 344, 748
FatI	CATG	2 cut(s)	380, 820
FauNDI	CATATG	2 cut(s)	649, 795
FbaI	TGATCA	3 cut(s)	27, 534, 652
Fnu4HI	GCNGC	3 cut(s)	72, 903, 924
FokI	GGATG	1 cut(s)	404
Fsp4HI	GCNGC	3 cut(s)	72, 903, 924
FspBI	CTAG	1 cut(s)	434
GlaI	GCGC	1 cut(s)	265
GluI	GCNGC	3 cut(s)	72, 903, 924
GsuI	CTGGAG	1 cut(s)	1029
HaeII	RGCGCY	1 cut(s)	267
HaeIII	GGCC	1 cut(s)	593
HhaI	GCGC	1 cut(s)	266
Hin1I	GRCGYC	1 cut(s)	264
Hin1II	CATG	2 cut(s)	384, 824
Hin6I	GCGC	1 cut(s)	264
HinP1I	GCGC	1 cut(s)	264
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HindIII	AAGCTT	3 cut(s)	20, 319, 909
HinfI	GANTC	4 cut(s)	377, 670, 848, 1001
HpaI	GTTAAC	1 cut(s)	151
HphI	GGTGA	1 cut(s)	207
Hpy166II	GTNNAC	3 cut(s)	151, 631, 809
Hpy188I	TCNGA	5 cut(s)	88, 472, 490, 579, 657
Hpy188III	TCNNGA	6 cut(s)	121, 286, 434, 802, 880, 917
Hpy8I	GTNNAC	3 cut(s)	151, 631, 809
HpyAV	CCTTC	6 cut(s)	185, 375, 495, 715, 827, 958
HpyCH4III	ACNGT	5 cut(s)	335, 611, 667, 872, 930
HpyCH4IV	ACGT	2 cut(s)	237, 573
HpyCH4V	TGCA	5 cut(s)	293, 495, 647, 866, 926
HpyF10VI	GCNNNNNNNGC	3 cut(s)	551, 908, 954
HpyF3I	CTNAG	6 cut(s)	85, 252, 322, 370, 727, 958
HpySE526I	ACGT	2 cut(s)	237, 573
Hsp92I	GRCGYC	1 cut(s)	264
Hsp92II	CATG	2 cut(s)	384, 824
HspAI	GCGC	1 cut(s)	264
KasI	GGCGCC	1 cut(s)	263
Ksp22I	TGATCA	3 cut(s)	27, 534, 652
KspAI	GTTAAC	1 cut(s)	151
Kzo9I	GATC	5 cut(s)	27, 472, 534, 652, 992
LmnI	GCTCC	3 cut(s)	110, 559, 968
LpnPI	CCDG	6 cut(s)	434, 650, 780, 802, 975, 993
Lsp1109I	GCAGC	2 cut(s)	58, 910
LweI	GCATC	3 cut(s)	291, 853, 910
MaeI	CTAG	1 cut(s)	434
MaeII	ACGT	2 cut(s)	237, 573
MaeIII	GTNAC	2 cut(s)	667, 1016
MalI	GATC	5 cut(s)	29, 474, 536, 654, 994
MboI	GATC	5 cut(s)	27, 472, 534, 652, 992
MboII	GAAGA	4 cut(s)	204, 393, 613, 772
MfeI	CAATTG	1 cut(s)	1042
MhlI	GDGCHC	2 cut(s)	462, 662
MluCI	AATT	7 cut(s)	116, 230, 674, 682, 706, 1026, 1042
Mly113I	GGCGCC	1 cut(s)	264
MlyI	GAGTC	1 cut(s)	664
MnlI	CCTC	8 cut(s)	62, 269, 277, 320, 379, 527, 989, 1048
Mph1103I	ATGCAT	2 cut(s)	649, 868
MroXI	GAANNNNTTC	1 cut(s)	912
MseI	TTAA	5 cut(s)	150, 162, 317, 465, 1072
MslI	CAYNNNNRTG	2 cut(s)	300, 665
MspCI	CTTAAG	1 cut(s)	316
MunI	CAATTG	1 cut(s)	1042
Mva1269I	GAATGC	1 cut(s)	295
MwoI	GCNNNNNNNGC	3 cut(s)	551, 908, 954
NarI	GGCGCC	1 cut(s)	264
NdeI	CATATG	2 cut(s)	649, 795
NdeII	GATC	5 cut(s)	27, 472, 534, 652, 992
NlaIII	CATG	2 cut(s)	384, 824
NlaIV	GGNNCC	1 cut(s)	265
NmeAIII	GCCGAG	1 cut(s)	240
NmuCI	GTSAC	1 cut(s)	667
NsiI	ATGCAT	2 cut(s)	649, 868
OliI	CACNNNNGTG	1 cut(s)	665
PctI	GAATGC	1 cut(s)	295
PdmI	GAANNNNTTC	1 cut(s)	912
PfeI	GAWTC	3 cut(s)	377, 848, 1001
PflFI	GACNNNGTC	1 cut(s)	335
PflMI	CCANNNNNTGG	1 cut(s)	589
PkrI	GCNGC	3 cut(s)	73, 904, 925
PleI	GAGTC	1 cut(s)	664
PluTI	GGCGCC	1 cut(s)	267
PpsI	GAGTC	1 cut(s)	664
PsiI	TTATAA	1 cut(s)	509
PspN4I	GGNNCC	1 cut(s)	265
PsyI	GACNNNGTC	1 cut(s)	335
RsaI	GTAC	1 cut(s)	428
RsaNI	GTAC	1 cut(s)	427
RseI	CAYNNNNRTG	2 cut(s)	300, 665
SaqAI	TTAA	5 cut(s)	150, 162, 317, 465, 1072
SatI	GCNGC	3 cut(s)	72, 903, 924
Sau3AI	GATC	5 cut(s)	27, 472, 534, 652, 992
SchI	GAGTC	1 cut(s)	664
SduI	GDGCHC	2 cut(s)	462, 662
SfaNI	GCATC	3 cut(s)	291, 853, 910
SfoI	GGCGCC	1 cut(s)	265
SmiMI	CAYNNNNRTG	2 cut(s)	300, 665
SmlI	CTYRAG	4 cut(s)	270, 316, 518, 800
SmoI	CTYRAG	4 cut(s)	270, 316, 518, 800
Sse9I	AATT	7 cut(s)	116, 230, 674, 682, 706, 1026, 1042
SsiI	CCGC	1 cut(s)	903
SspDI	GGCGCC	1 cut(s)	263
SspI	AATATT	1 cut(s)	1069
SspMI	CTAG	1 cut(s)	434
TaaI	ACNGT	5 cut(s)	335, 611, 667, 872, 930
TaiI	ACGT	2 cut(s)	240, 576
TaqI	TCGA	2 cut(s)	192, 339
TasI	AATT	7 cut(s)	116, 230, 674, 682, 706, 1026, 1042
TatI	WGTACW	1 cut(s)	426
TauI	GCSGC	1 cut(s)	905
TfiI	GAWTC	3 cut(s)	377, 848, 1001
Tru1I	TTAA	5 cut(s)	150, 162, 317, 465, 1072
Tru9I	TTAA	5 cut(s)	150, 162, 317, 465, 1072
TscAI	CASTG	4 cut(s)	256, 340, 790, 935
TseFI	GTSAC	1 cut(s)	667
TseI	GCWGC	2 cut(s)	71, 923
Tsp45I	GTSAC	1 cut(s)	667
TspDTI	ATGAA	4 cut(s)	31, 369, 667, 809
TspRI	CASTG	4 cut(s)	256, 340, 790, 935
Tth111I	GACNNNGTC	1 cut(s)	335
Van91I	CCANNNNNTGG	1 cut(s)	589
Vha464I	CTTAAG	1 cut(s)	316
XapI	RAATTY	2 cut(s)	116, 230
XbaI	TCTAGA	1 cut(s)	433
XmnI	GAANNNNTTC	1 cut(s)	912
XspI	CTAG	1 cut(s)	434
Zsp2I	ATGCAT	2 cut(s)	649, 868

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.