Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001934

Physical Location & Seq

Genomic Coordinates Forward (+)

45743386 .. 45745417

Gene Structure 2032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025431

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGCAGTTCCAAAGCTGAAGCTTATGATCAGCCTTGTATGCATTCAAGCCCTCATCACTTCAATCCAAGCTGCCCCATCAAACTCAGATATATTCAGAGAATACATAGGAGCTGAATTCAAGAATGTCAAGTTTTCCGATGTCCCCATTAACCCAAATGTTAAGAAGTTCCACTTCCTTCTCTCCTTTGCCATCGACTATGACACCTCAGGTTCTTCACCCACCAATGGAAAATTCAACGTCTTTTGGGACACGGACAACCTCGGCGCCTCTCAAGTTTCGGACATCAAGAATGCACATTCAAATGTGAAAGTTGGCTTAAGCTTAGGAGGGGACAGTGTCAATAGTGCCCCTGCTTACTTCAACCCTTCCTCAGTTGATTCATGGGTTTCTAATGCTGTTTCTTCACTCACAGGTATCATCCAGCAGTACAATCTAGATGGGCTTGACATTGATTACGAGCACTTTAAATCTGATCCCACCACCTTTTCCGAGTGCATTGGAAGGCTTATAAAAACCCTCAAGGACAATGGTGTGATCAAGTTTGCTTCCATTGCTCCGTTTGATGACGATGACGTTCAGAGCCACTACTTGGCCTTGTGGAAGAACTACGGTCAGTTGATAGACTATGTGAACTTCCAGTTCTATGCATATGATCAGAGCACCACTGTGACTCAATTCATCAATTATTTCAAGAAGCAAAGCTCAAATTACAATGGTGGGAAGGTCTTAGCGAGCTTTAGCACGGATGGGAGTGGTGGCTTGTCCCCTGAAAATGGGTTCTTCACTGCCTGCCATAGGCTCAAGAGTGAACAAATCCTTCATGGTATCTTTGTTTGGTCTGCTGATGATTCCAAGACAAATGGTTTCCACTATGAAGAGCAATCCCAAGCTCTTTTGGCAATTCCACACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

305

Amino Acids

33.61

Weight (kDa)

5.28

Isoelectric Point (pI)

32.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_18	PF00704	83 - 221	3.7e-13	Glycosyl hydrolases family 18
TIM-barrel_EndoS	PF23916	132 - 234	1e-06	Endo-beta-N-acetylglucosaminidase EndoS TIM-barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001934)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34450 FvH4_6g05690 FvH4_6g27980
malus_domestica	MD03G1105600.v1.1 MD11G1118100.v1.1
prunus_persica	Prupe.4G164000_v2.0.a1 Prupe.6G088400_v2.0.a1
pyrus_communis	pycom11g07790 pycom11g09900
rosa_chinensis	RchiOBHm_Chr3g0454591 RchiOBHm_Chr5g0062101 RchiOBHm_Chr5g0062131 RchiOBHm_Chr5g0062171
rosa_laevigata	RLG00000025431 RLG00000035531 RLG00000035534 RLG00000035538
rosa_multiflora	Rmu_sc0001792.1_g000040 Rmu_sc0002296.1_g000014 Rmu_sc0002296.1_g000017 Rmu_sc0002296.1_g000019 Rmu_sc0009685.1_g000002 Rmu_sc0009685.1_g000009
rosa_roxburghii	Rroxscaffold_1G00018540 Rroxscaffold_1G00018570 Rroxscaffold_1G00018600 Rroxscaffold_1G00018620 Rroxscaffold_6G00424950
rosa_rugosa	Rorug03G0000400 Rorug05G0346000 Rorug05G0346200
rosa_samantha	Rh3AG060200 Rh3BG062300 Rh3CG061100 Rh3DG061900 Rh5BG420900 Rh5BG421100 Rh5CG444900 Rh5CG445200 Rh5DG436000 Rh5DG436100 Rh5DG436200
rosa_wichuraiana	Rw3G004680 Rw5G038380 Rw5G038390 Rw5G038400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	512
AccB1I	GGYRCC	1 cut(s)	266
AccB7I	CCANNNNNTGG	1 cut(s)	592
AclWI	GGATC	1 cut(s)	470
AcsI	RAATTY	2 cut(s)	116, 233
AcuI	CTGAAG	1 cut(s)	38
AcyI	GRCGYC	1 cut(s)	267
AfaI	GTAC	1 cut(s)	431
AfiI	CCNNNNNNNGG	4 cut(s)	227, 592, 776, 798
AflII	CTTAAG	1 cut(s)	319
AgsI	TTSAA	7 cut(s)	47, 63, 121, 238, 303, 364, 694
AjuI	GAANNNNNNNTTGG	2 cut(s)	218, 250
AleI	CACNNNNGTG	1 cut(s)	668
AluBI	AGCT	8 cut(s)	16, 22, 71, 113, 324, 705, 738, 893
AluI	AGCT	8 cut(s)	16, 22, 71, 113, 324, 705, 738, 893
Alw21I	GWGCWC	2 cut(s)	465, 665
AlwI	GGATC	1 cut(s)	470
AoxI	GGCC	1 cut(s)	594
ApeKI	GCWGC	1 cut(s)	71
ApoI	RAATTY	2 cut(s)	116, 233
AspLEI	GCGC	1 cut(s)	269
AsuHPI	GGTGA	1 cut(s)	210
AxyI	CCTNAGG	1 cut(s)	208
BaeGI	GKGCMC	1 cut(s)	352
BanI	GGYRCC	1 cut(s)	266
Bbv12I	GWGCWC	2 cut(s)	465, 665
BbvI	GCAGC	1 cut(s)	58
BccI	CCATC	4 cut(s)	85, 200, 434, 743
BclI	TGATCA	3 cut(s)	27, 537, 655
BfaI	CTAG	2 cut(s)	437, 913
BfoI	RGCGCY	1 cut(s)	270
BfrI	CTTAAG	1 cut(s)	319
BisI	GCNGC	1 cut(s)	72
BlsI	GCNGC	1 cut(s)	73
BmiI	GGNNCC	1 cut(s)	268
Bpu10I	CCTNAGC	1 cut(s)	325
BpuEI	CTTGAG	3 cut(s)	258, 506, 788
BsaHI	GRCGYC	1 cut(s)	267
BsaJI	CCNNGG	1 cut(s)	262
Bsc4I	CCNNNNNNNGG	4 cut(s)	227, 592, 776, 798
Bse1I	ACTGG	1 cut(s)	640
Bse21I	CCTNAGG	1 cut(s)	208
Bse3DI	GCAATG	1 cut(s)	552
BseDI	CCNNGG	1 cut(s)	262
BseGI	GGATG	2 cut(s)	420, 754
BseLI	CCNNNNNNNGG	4 cut(s)	227, 592, 776, 798
BseMI	GCAATG	1 cut(s)	552
BseMII	CTCAG	3 cut(s)	99, 222, 387
BseNI	ACTGG	1 cut(s)	640
BseSI	GKGCMC	1 cut(s)	352
BseXI	GCAGC	1 cut(s)	58
BshFI	GGCC	1 cut(s)	596
BshNI	GGYRCC	1 cut(s)	266
BsiHKAI	GWGCWC	2 cut(s)	465, 665
BslFI	GGGAC	4 cut(s)	128, 263, 347, 751
BslI	CCNNNNNNNGG	4 cut(s)	227, 592, 776, 798
BsmFI	GGGAC	4 cut(s)	128, 263, 347, 751
BsmI	GAATGC	2 cut(s)	42, 298
BsnI	GGCC	1 cut(s)	596
Bsp1286I	GDGCHC	3 cut(s)	352, 465, 665
Bsp143I	GATC	4 cut(s)	27, 475, 537, 655
BspANI	GGCC	1 cut(s)	596
BspCNI	CTCAG	3 cut(s)	98, 221, 386
BspLI	GGNNCC	1 cut(s)	268
BspPI	GGATC	1 cut(s)	470
BspQI	GCTCTTC	1 cut(s)	873
BspT107I	GGYRCC	1 cut(s)	266
BspTI	CTTAAG	1 cut(s)	319
BsrDI	GCAATG	1 cut(s)	552
BsrI	ACTGG	1 cut(s)	640
BssECI	CCNNGG	1 cut(s)	262
BssMI	GATC	4 cut(s)	27, 475, 537, 655
BssNI	GRCGYC	1 cut(s)	267
Bst4CI	ACNGT	3 cut(s)	338, 614, 670
Bst6I	CTCTTC	1 cut(s)	873
BstACI	GRCGYC	1 cut(s)	267
BstAFI	CTTAAG	1 cut(s)	319
BstC8I	GCNNGC	2 cut(s)	736, 793
BstDEI	CTNAG	5 cut(s)	85, 208, 325, 373, 730
BstENI	CCTNNNNNAGG	1 cut(s)	796
BstF5I	GGATG	2 cut(s)	420, 754
BstH2I	RGCGCY	1 cut(s)	270
BstHHI	GCGC	1 cut(s)	269
BstKTI	GATC	4 cut(s)	30, 478, 540, 658
BstMBI	GATC	4 cut(s)	27, 475, 537, 655
BstMWI	GCNNNNNNNGC	3 cut(s)	39, 554, 899
BstSLI	GKGCMC	1 cut(s)	352
BstV1I	GCAGC	1 cut(s)	58
Bsu36I	CCTNAGG	1 cut(s)	208
BsuRI	GGCC	1 cut(s)	596
BtsCI	GGATG	2 cut(s)	420, 754
BtsI	GCAGTG	1 cut(s)	786
BtsIMutI	CAGTG	3 cut(s)	343, 666, 786
Cac8I	GCNNGC	2 cut(s)	736, 793
CfoI	GCGC	1 cut(s)	269
Csp6I	GTAC	1 cut(s)	430
CviAII	CATG	2 cut(s)	384, 824
CviQI	GTAC	1 cut(s)	430
DdeI	CTNAG	5 cut(s)	85, 208, 325, 373, 730
DinI	GGCGCC	1 cut(s)	268
DpnI	GATC	4 cut(s)	29, 477, 539, 657
DpnII	GATC	4 cut(s)	27, 475, 537, 655
DraI	TTTAAA	1 cut(s)	469
Eam1104I	CTCTTC	1 cut(s)	873
EarI	CTCTTC	1 cut(s)	873
Eco57I	CTGAAG	1 cut(s)	38
Eco81I	CCTNAGG	1 cut(s)	208
EcoNI	CCTNNNNNAGG	1 cut(s)	796
EcoRI	GAATTC	1 cut(s)	116
EcoT22I	ATGCAT	2 cut(s)	44, 652
EgeI	GGCGCC	1 cut(s)	268
EheI	GGCGCC	1 cut(s)	268
FaeI	CATG	2 cut(s)	387, 827
FalI	AAGNNNNNCTT	2 cut(s)	158, 190
FaqI	GGGAC	4 cut(s)	128, 263, 347, 751
FatI	CATG	2 cut(s)	383, 823
FauNDI	CATATG	1 cut(s)	652
FbaI	TGATCA	3 cut(s)	27, 537, 655
Fnu4HI	GCNGC	1 cut(s)	72
FokI	GGATG	2 cut(s)	407, 761
Fsp4HI	GCNGC	1 cut(s)	72
FspBI	CTAG	2 cut(s)	437, 913
GlaI	GCGC	1 cut(s)	268
GluI	GCNGC	1 cut(s)	72
HaeII	RGCGCY	1 cut(s)	270
HaeIII	GGCC	1 cut(s)	596
HhaI	GCGC	1 cut(s)	269
Hin1I	GRCGYC	1 cut(s)	267
Hin1II	CATG	2 cut(s)	387, 827
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HindIII	AAGCTT	2 cut(s)	20, 322
HinfI	GANTC	3 cut(s)	380, 673, 851
HphI	GGTGA	1 cut(s)	210
Hpy166II	GTNNAC	2 cut(s)	634, 812
Hpy188I	TCNGA	8 cut(s)	88, 98, 139, 283, 475, 493, 582, 660
Hpy188III	TCNNGA	5 cut(s)	121, 289, 437, 694, 805
Hpy8I	GTNNAC	2 cut(s)	634, 812
HpyAV	CCTTC	5 cut(s)	188, 378, 498, 718, 830
HpyCH4III	ACNGT	3 cut(s)	338, 614, 670
HpyCH4IV	ACGT	2 cut(s)	240, 576
HpyCH4V	TGCA	4 cut(s)	42, 296, 498, 650
HpyF10VI	GCNNNNNNNGC	3 cut(s)	39, 554, 899
HpyF3I	CTNAG	5 cut(s)	85, 208, 325, 373, 730
HpySE526I	ACGT	2 cut(s)	240, 576
Hsp92I	GRCGYC	1 cut(s)	267
Hsp92II	CATG	2 cut(s)	387, 827
HspAI	GCGC	1 cut(s)	267
KasI	GGCGCC	1 cut(s)	266
Ksp22I	TGATCA	3 cut(s)	27, 537, 655
Kzo9I	GATC	4 cut(s)	27, 475, 537, 655
LguI	GCTCTTC	1 cut(s)	873
LmnI	GCTCC	2 cut(s)	110, 562
LpnPI	CCDG	7 cut(s)	195, 366, 399, 437, 653, 783, 805
Lsp1109I	GCAGC	1 cut(s)	58
MaeI	CTAG	2 cut(s)	437, 913
MaeII	ACGT	2 cut(s)	240, 576
MaeIII	GTNAC	1 cut(s)	670
MalI	GATC	4 cut(s)	29, 477, 539, 657
MboI	GATC	4 cut(s)	27, 475, 537, 655
MboII	GAAGA	5 cut(s)	207, 396, 616, 775, 890
MhlI	GDGCHC	3 cut(s)	352, 465, 665
MluCI	AATT	6 cut(s)	116, 233, 677, 685, 709, 903
Mly113I	GGCGCC	1 cut(s)	267
MlyI	GAGTC	1 cut(s)	667
MnlI	CCTC	7 cut(s)	62, 217, 272, 280, 323, 382, 530
Mph1103I	ATGCAT	2 cut(s)	44, 652
MseI	TTAA	4 cut(s)	150, 162, 320, 468
MslI	CAYNNNNRTG	2 cut(s)	303, 668
MspCI	CTTAAG	1 cut(s)	319
Mva1269I	GAATGC	2 cut(s)	42, 298
MwoI	GCNNNNNNNGC	3 cut(s)	39, 554, 899
NarI	GGCGCC	1 cut(s)	267
NdeI	CATATG	1 cut(s)	652
NdeII	GATC	4 cut(s)	27, 475, 537, 655
NlaIII	CATG	2 cut(s)	387, 827
NlaIV	GGNNCC	1 cut(s)	268
NmeAIII	GCCGAG	1 cut(s)	243
NmuCI	GTSAC	1 cut(s)	670
NsiI	ATGCAT	2 cut(s)	44, 652
OliI	CACNNNNGTG	1 cut(s)	668
PciSI	GCTCTTC	1 cut(s)	873
PctI	GAATGC	2 cut(s)	42, 298
PfeI	GAWTC	2 cut(s)	380, 851
PflFI	GACNNNGTC	1 cut(s)	338
PflMI	CCANNNNNTGG	1 cut(s)	592
PkrI	GCNGC	1 cut(s)	73
PleI	GAGTC	1 cut(s)	667
PluTI	GGCGCC	1 cut(s)	270
PpsI	GAGTC	1 cut(s)	667
PsiI	TTATAA	1 cut(s)	512
PspN4I	GGNNCC	1 cut(s)	268
PsyI	GACNNNGTC	1 cut(s)	338
RsaI	GTAC	1 cut(s)	431
RsaNI	GTAC	1 cut(s)	430
RseI	CAYNNNNRTG	2 cut(s)	303, 668
SapI	GCTCTTC	1 cut(s)	873
SaqAI	TTAA	4 cut(s)	150, 162, 320, 468
SatI	GCNGC	1 cut(s)	72
Sau3AI	GATC	4 cut(s)	27, 475, 537, 655
SchI	GAGTC	1 cut(s)	667
SduI	GDGCHC	3 cut(s)	352, 465, 665
SfoI	GGCGCC	1 cut(s)	268
SmiMI	CAYNNNNRTG	2 cut(s)	303, 668
SmlI	CTYRAG	4 cut(s)	273, 319, 521, 803
SmoI	CTYRAG	4 cut(s)	273, 319, 521, 803
Sse9I	AATT	6 cut(s)	116, 233, 677, 685, 709, 903
SspDI	GGCGCC	1 cut(s)	266
SspMI	CTAG	2 cut(s)	437, 913
TaaI	ACNGT	3 cut(s)	338, 614, 670
TaiI	ACGT	2 cut(s)	243, 579
TaqI	TCGA	1 cut(s)	195
TasI	AATT	6 cut(s)	116, 233, 677, 685, 709, 903
TatI	WGTACW	1 cut(s)	429
TfiI	GAWTC	2 cut(s)	380, 851
Tru1I	TTAA	4 cut(s)	150, 162, 320, 468
Tru9I	TTAA	4 cut(s)	150, 162, 320, 468
TscAI	CASTG	3 cut(s)	343, 673, 793
TseFI	GTSAC	1 cut(s)	670
TseI	GCWGC	1 cut(s)	71
Tsp45I	GTSAC	1 cut(s)	670
TspDTI	ATGAA	4 cut(s)	372, 670, 812, 891
TspGWI	ACGGA	3 cut(s)	269, 549, 761
TspRI	CASTG	3 cut(s)	343, 673, 793
Tth111I	GACNNNGTC	1 cut(s)	338
Van91I	CCANNNNNTGG	1 cut(s)	592
Vha464I	CTTAAG	1 cut(s)	319
XagI	CCTNNNNNAGG	1 cut(s)	796
XapI	RAATTY	2 cut(s)	116, 233
XbaI	TCTAGA	1 cut(s)	436
XspI	CTAG	2 cut(s)	437, 913
Zsp2I	ATGCAT	2 cut(s)	44, 652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.