Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001934

Physical Location & Seq

Genomic Coordinates Reverse (-)

68094924 .. 68096721

Gene Structure 1798 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035538

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGAGCCCTCATGATCACATCCCACGCCTCAATAGAAGCTGCCCATCAAACTCAGATATTTTCAGAGAATACATAGGAGCTGAATTCAACAACGTCAAGTTTTCTGATGTCCCCATTAACCCAAATGTTGAGTTCCACTTCCTTCTCTCCTTCGCTGTCGACTACGACACTTCAGGCTCTTCACCAACAAATGGAAATTTCAATGTCTTTTGGGACACCGACAACCTCGGCGCCTCTCAAGTTTCGGACATCAAGAATGCACATTCAAATGTGAAAGTTGGCTTAAGCTTAGGAGGGGACAGTGTCAATAGTGGCTCTTGTTACTTCAACCCTTCCTCAGTTGATTCATGGGTTTCTAATGCTATTTCTTCACTCACAAGAATCATCCAGCAGTATAATCTAGATGGGATTGACATTGATTACGAGCACTTTCAATCCGATCCCGATACCTTTTCCCAGTGCATTGGAACACTTATAAAAACCCTCAAGGACAATGGTGTGATCAAGTTTGCTTCCATTGCTCCGTTTGATGACGATGACGTCCAGAGCCACTACTTGGCTTTGTGGAAGAACTATGGCCAGTTGATAGACTATGTGAACTTCCAGTTCTATGCTTATGATCAGAGCACCACAGTGTCTCAGTTCATCGATTATTTCAAGACTCAAAGCTCAAACTATATTGGCGGGAAGGTCTTAGCAAGCTTTAGCACCGATGGGAGTGGTGGATTGTCCCCTGAAGATGGGTTCTTCAATGCCTGCCATAGGCTCAAGAGTGAACAAAACCTTCATGGTATCTTTGTTTGGTCTGCTGATGATTCCAAGAAAAATGGTTTTCGCTATGAAAAGCAATCCCAAGATCTTTTGGCAATTCCACACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

293

Amino Acids

32.59

Weight (kDa)

4.72

Isoelectric Point (pI)

38.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_18	PF00704	69 - 209	8.4e-14	Glycosyl hydrolases family 18
TIM-barrel_EndoS	PF23916	121 - 221	1.1e-06	Endo-beta-N-acetylglucosaminidase EndoS TIM-barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001934)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34450 FvH4_6g05690 FvH4_6g27980
malus_domestica	MD03G1105600.v1.1 MD11G1118100.v1.1
prunus_persica	Prupe.4G164000_v2.0.a1 Prupe.6G088400_v2.0.a1
pyrus_communis	pycom11g07790 pycom11g09900
rosa_chinensis	RchiOBHm_Chr3g0454591 RchiOBHm_Chr5g0062101 RchiOBHm_Chr5g0062131 RchiOBHm_Chr5g0062171
rosa_laevigata	RLG00000025431 RLG00000035531 RLG00000035534 RLG00000035538
rosa_multiflora	Rmu_sc0001792.1_g000040 Rmu_sc0002296.1_g000014 Rmu_sc0002296.1_g000017 Rmu_sc0002296.1_g000019 Rmu_sc0009685.1_g000002 Rmu_sc0009685.1_g000009
rosa_roxburghii	Rroxscaffold_1G00018540 Rroxscaffold_1G00018570 Rroxscaffold_1G00018600 Rroxscaffold_1G00018620 Rroxscaffold_6G00424950
rosa_rugosa	Rorug03G0000400 Rorug05G0346000 Rorug05G0346200
rosa_samantha	Rh3AG060200 Rh3BG062300 Rh3CG061100 Rh3DG061900 Rh5BG420900 Rh5BG421100 Rh5CG444900 Rh5CG445200 Rh5DG436000 Rh5DG436100 Rh5DG436200
rosa_wichuraiana	Rw3G004680 Rw5G038380 Rw5G038390 Rw5G038400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	476
AasI	GACNNNNNNGTC	1 cut(s)	539
AatII	GACGTC	1 cut(s)	543
AccB1I	GGYRCC	1 cut(s)	230
AccB7I	CCANNNNNTGG	2 cut(s)	191, 556
AccI	GTMKAC	1 cut(s)	159
AciI	CCGC	1 cut(s)	684
AclWI	GGATC	1 cut(s)	434
AcoI	YGGCCR	1 cut(s)	577
AcsI	RAATTY	2 cut(s)	83, 196
AcuI	CTGAAG	2 cut(s)	156, 756
AcyI	GRCGYC	2 cut(s)	231, 540
AfiI	CCNNNNNNNGG	4 cut(s)	191, 556, 740, 762
AflII	CTTAAG	1 cut(s)	283
AgsI	TTSAA	7 cut(s)	88, 202, 267, 328, 434, 658, 751
AleI	CACNNNNGTG	1 cut(s)	632
AluBI	AGCT	5 cut(s)	39, 80, 288, 669, 702
AluI	AGCT	5 cut(s)	39, 80, 288, 669, 702
Alw21I	GWGCWC	2 cut(s)	429, 629
Alw26I	GTCTC	1 cut(s)	642
AlwI	GGATC	1 cut(s)	434
AoxI	GGCC	1 cut(s)	577
ApeKI	GCWGC	1 cut(s)	39
ApoI	RAATTY	2 cut(s)	83, 196
AspLEI	GCGC	1 cut(s)	233
AsuHPI	GGTGA	1 cut(s)	174
BalI	TGGCCA	1 cut(s)	579
BanI	GGYRCC	1 cut(s)	230
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	2 cut(s)	429, 629
BbvI	GCAGC	1 cut(s)	26
BccI	CCATC	4 cut(s)	52, 398, 707, 734
BclI	TGATCA	3 cut(s)	13, 501, 619
BcoDI	GTCTC	1 cut(s)	642
BfaI	CTAG	2 cut(s)	401, 877
BfoI	RGCGCY	1 cut(s)	234
BfrI	CTTAAG	1 cut(s)	283
BglII	AGATCT	1 cut(s)	856
BisI	GCNGC	1 cut(s)	40
BlsI	GCNGC	1 cut(s)	41
BmiI	GGNNCC	1 cut(s)	232
BmrI	ACTGGG	1 cut(s)	451
BmuI	ACTGGG	1 cut(s)	451
Bpu10I	CCTNAGC	1 cut(s)	289
BpuEI	CTTGAG	3 cut(s)	222, 470, 752
Bsa29I	ATCGAT	1 cut(s)	648
BsaHI	GRCGYC	2 cut(s)	231, 540
BsaJI	CCNNGG	1 cut(s)	226
Bsc4I	CCNNNNNNNGG	4 cut(s)	191, 556, 740, 762
Bse1I	ACTGG	3 cut(s)	457, 580, 604
Bse3DI	GCAATG	1 cut(s)	516
BseCI	ATCGAT	1 cut(s)	648
BseDI	CCNNGG	1 cut(s)	226
BseGI	GGATG	2 cut(s)	18, 384
BseLI	CCNNNNNNNGG	4 cut(s)	191, 556, 740, 762
BseMI	GCAATG	1 cut(s)	516
BseMII	CTCAG	3 cut(s)	66, 351, 653
BseNI	ACTGG	3 cut(s)	457, 580, 604
BseXI	GCAGC	1 cut(s)	26
BshFI	GGCC	1 cut(s)	579
BshNI	GGYRCC	1 cut(s)	230
BshVI	ATCGAT	1 cut(s)	648
BsiHKAI	GWGCWC	2 cut(s)	429, 629
BslFI	GGGAC	4 cut(s)	95, 227, 311, 715
BslI	CCNNNNNNNGG	4 cut(s)	191, 556, 740, 762
BsmAI	GTCTC	1 cut(s)	642
BsmFI	GGGAC	4 cut(s)	95, 227, 311, 715
BsmI	GAATGC	1 cut(s)	262
BsnI	GGCC	1 cut(s)	579
Bsp1286I	GDGCHC	3 cut(s)	8, 429, 629
Bsp143I	GATC	5 cut(s)	13, 439, 501, 619, 856
BspACI	CCGC	1 cut(s)	684
BspANI	GGCC	1 cut(s)	579
BspCNI	CTCAG	3 cut(s)	65, 350, 652
BspDI	ATCGAT	1 cut(s)	648
BspHI	TCATGA	1 cut(s)	10
BspLI	GGNNCC	1 cut(s)	232
BspPI	GGATC	1 cut(s)	434
BspQI	GCTCTTC	1 cut(s)	184
BspT107I	GGYRCC	1 cut(s)	230
BspTI	CTTAAG	1 cut(s)	283
BsrDI	GCAATG	1 cut(s)	516
BsrI	ACTGG	3 cut(s)	457, 580, 604
BssECI	CCNNGG	1 cut(s)	226
BssMI	GATC	5 cut(s)	13, 439, 501, 619, 856
BssNI	GRCGYC	2 cut(s)	231, 540
Bst4CI	ACNGT	2 cut(s)	302, 634
Bst6I	CTCTTC	1 cut(s)	184
BstACI	GRCGYC	2 cut(s)	231, 540
BstAFI	CTTAAG	1 cut(s)	283
BstC8I	GCNNGC	2 cut(s)	700, 757
BstDEI	CTNAG	5 cut(s)	52, 289, 337, 639, 694
BstENI	CCTNNNNNAGG	1 cut(s)	760
BstF5I	GGATG	2 cut(s)	18, 384
BstH2I	RGCGCY	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	233
BstKTI	GATC	5 cut(s)	16, 442, 504, 622, 859
BstMAI	GTCTC	1 cut(s)	642
BstMBI	GATC	5 cut(s)	13, 439, 501, 619, 856
BstMWI	GCNNNNNNNGC	1 cut(s)	518
BstV1I	GCAGC	1 cut(s)	26
BstX2I	RGATCY	1 cut(s)	856
BstXI	CCANNNNNNTGG	1 cut(s)	464
BstYI	RGATCY	1 cut(s)	856
Bsu15I	ATCGAT	1 cut(s)	648
BsuRI	GGCC	1 cut(s)	579
BsuTUI	ATCGAT	1 cut(s)	648
BtsCI	GGATG	2 cut(s)	18, 384
BtsIMutI	CAGTG	3 cut(s)	307, 464, 639
Cac8I	GCNNGC	2 cut(s)	700, 757
CciI	TCATGA	1 cut(s)	10
CfoI	GCGC	1 cut(s)	233
ClaI	ATCGAT	1 cut(s)	648
CviAII	CATG	3 cut(s)	11, 348, 788
DdeI	CTNAG	5 cut(s)	52, 289, 337, 639, 694
DinI	GGCGCC	1 cut(s)	232
DpnI	GATC	5 cut(s)	15, 441, 503, 621, 858
DpnII	GATC	5 cut(s)	13, 439, 501, 619, 856
DrdI	GACNNNNNNGTC	1 cut(s)	539
DseDI	GACNNNNNNGTC	1 cut(s)	539
EaeI	YGGCCR	1 cut(s)	577
Eam1104I	CTCTTC	1 cut(s)	184
EarI	CTCTTC	1 cut(s)	184
Eco24I	GRGCYC	1 cut(s)	8
Eco57I	CTGAAG	2 cut(s)	156, 756
EcoNI	CCTNNNNNAGG	1 cut(s)	760
EcoRI	GAATTC	1 cut(s)	83
EcoT38I	GRGCYC	1 cut(s)	8
EgeI	GGCGCC	1 cut(s)	232
EheI	GGCGCC	1 cut(s)	232
FaeI	CATG	3 cut(s)	14, 351, 791
FaqI	GGGAC	4 cut(s)	95, 227, 311, 715
FatI	CATG	3 cut(s)	10, 347, 787
FauI	CCCGC	1 cut(s)	677
FbaI	TGATCA	3 cut(s)	13, 501, 619
FblI	GTMKAC	1 cut(s)	159
Fnu4HI	GCNGC	1 cut(s)	40
FokI	GGATG	2 cut(s)	5, 371
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	1 cut(s)	40
FspBI	CTAG	2 cut(s)	401, 877
GlaI	GCGC	1 cut(s)	232
GluI	GCNGC	1 cut(s)	40
HaeII	RGCGCY	1 cut(s)	234
HaeIII	GGCC	1 cut(s)	579
HhaI	GCGC	1 cut(s)	233
Hin1I	GRCGYC	2 cut(s)	231, 540
Hin1II	CATG	3 cut(s)	14, 351, 791
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HindIII	AAGCTT	2 cut(s)	286, 700
HinfI	GANTC	4 cut(s)	344, 381, 661, 815
HphI	GGTGA	1 cut(s)	174
Hpy166II	GTNNAC	3 cut(s)	160, 598, 776
Hpy188I	TCNGA	6 cut(s)	55, 65, 106, 247, 439, 624
Hpy188III	TCNNGA	7 cut(s)	11, 253, 401, 443, 544, 658, 769
Hpy8I	GTNNAC	3 cut(s)	160, 598, 776
HpyAV	CCTTC	5 cut(s)	152, 160, 342, 682, 794
HpyCH4III	ACNGT	2 cut(s)	302, 634
HpyCH4IV	ACGT	2 cut(s)	93, 540
HpyCH4V	TGCA	2 cut(s)	260, 462
HpyF10VI	GCNNNNNNNGC	1 cut(s)	518
HpyF3I	CTNAG	5 cut(s)	52, 289, 337, 639, 694
HpySE526I	ACGT	2 cut(s)	93, 540
Hsp92I	GRCGYC	2 cut(s)	231, 540
Hsp92II	CATG	3 cut(s)	14, 351, 791
HspAI	GCGC	1 cut(s)	231
KasI	GGCGCC	1 cut(s)	230
Ksp22I	TGATCA	3 cut(s)	13, 501, 619
Kzo9I	GATC	5 cut(s)	13, 439, 501, 619, 856
LguI	GCTCTTC	1 cut(s)	184
LmnI	GCTCC	2 cut(s)	77, 526
LpnPI	CCDG	8 cut(s)	159, 401, 470, 557, 593, 617, 747, 769
Lsp1109I	GCAGC	1 cut(s)	26
MaeI	CTAG	2 cut(s)	401, 877
MaeII	ACGT	2 cut(s)	93, 540
MaeIII	GTNAC	1 cut(s)	320
MalI	GATC	5 cut(s)	15, 441, 503, 621, 858
MboI	GATC	5 cut(s)	13, 439, 501, 619, 856
MboII	GAAGA	5 cut(s)	171, 360, 580, 739, 749
MflI	RGATCY	1 cut(s)	856
MhlI	GDGCHC	3 cut(s)	8, 429, 629
MlsI	TGGCCA	1 cut(s)	579
MluCI	AATT	3 cut(s)	83, 196, 867
MluNI	TGGCCA	1 cut(s)	579
Mly113I	GGCGCC	1 cut(s)	231
MlyI	GAGTC	1 cut(s)	655
MnlI	CCTC	7 cut(s)	18, 38, 236, 244, 287, 346, 494
Mox20I	TGGCCA	1 cut(s)	579
MscI	TGGCCA	1 cut(s)	579
MseI	TTAA	2 cut(s)	117, 284
MslI	CAYNNNNRTG	2 cut(s)	267, 632
Msp20I	TGGCCA	1 cut(s)	579
MspCI	CTTAAG	1 cut(s)	283
Mva1269I	GAATGC	1 cut(s)	262
MwoI	GCNNNNNNNGC	1 cut(s)	518
NarI	GGCGCC	1 cut(s)	231
NdeII	GATC	5 cut(s)	13, 439, 501, 619, 856
NlaIII	CATG	3 cut(s)	14, 351, 791
NlaIV	GGNNCC	1 cut(s)	232
NmeAIII	GCCGAG	1 cut(s)	207
OliI	CACNNNNGTG	1 cut(s)	632
PagI	TCATGA	1 cut(s)	10
PciSI	GCTCTTC	1 cut(s)	184
PctI	GAATGC	1 cut(s)	262
PfeI	GAWTC	3 cut(s)	344, 381, 815
PflFI	GACNNNGTC	1 cut(s)	302
PflMI	CCANNNNNTGG	2 cut(s)	191, 556
PkrI	GCNGC	1 cut(s)	41
PleI	GAGTC	1 cut(s)	655
PluTI	GGCGCC	1 cut(s)	234
PpsI	GAGTC	1 cut(s)	655
PsiI	TTATAA	1 cut(s)	476
PspN4I	GGNNCC	1 cut(s)	232
PsuI	RGATCY	1 cut(s)	856
PsyI	GACNNNGTC	1 cut(s)	302
RseI	CAYNNNNRTG	2 cut(s)	267, 632
SalI	GTCGAC	1 cut(s)	158
SapI	GCTCTTC	1 cut(s)	184
SaqAI	TTAA	2 cut(s)	117, 284
SatI	GCNGC	1 cut(s)	40
Sau3AI	GATC	5 cut(s)	13, 439, 501, 619, 856
SchI	GAGTC	1 cut(s)	655
SduI	GDGCHC	3 cut(s)	8, 429, 629
SfoI	GGCGCC	1 cut(s)	232
SmiMI	CAYNNNNRTG	2 cut(s)	267, 632
SmlI	CTYRAG	4 cut(s)	237, 283, 485, 767
SmoI	CTYRAG	4 cut(s)	237, 283, 485, 767
Sse9I	AATT	3 cut(s)	83, 196, 867
SsiI	CCGC	1 cut(s)	684
SspDI	GGCGCC	1 cut(s)	230
SspMI	CTAG	2 cut(s)	401, 877
TaaI	ACNGT	2 cut(s)	302, 634
TaiI	ACGT	2 cut(s)	96, 543
TaqI	TCGA	2 cut(s)	159, 648
TasI	AATT	3 cut(s)	83, 196, 867
TfiI	GAWTC	3 cut(s)	344, 381, 815
Tru1I	TTAA	2 cut(s)	117, 284
Tru9I	TTAA	2 cut(s)	117, 284
TscAI	CASTG	3 cut(s)	307, 464, 639
TseI	GCWGC	1 cut(s)	39
TspDTI	ATGAA	4 cut(s)	336, 634, 776, 855
TspGWI	ACGGA	1 cut(s)	513
TspRI	CASTG	3 cut(s)	307, 464, 639
Tth111I	GACNNNGTC	1 cut(s)	302
Van91I	CCANNNNNTGG	2 cut(s)	191, 556
Vha464I	CTTAAG	1 cut(s)	283
XagI	CCTNNNNNAGG	1 cut(s)	760
XapI	RAATTY	2 cut(s)	83, 196
XbaI	TCTAGA	1 cut(s)	400
XmiI	GTMKAC	1 cut(s)	159
XspI	CTAG	2 cut(s)	401, 877
ZraI	GACGTC	1 cut(s)	541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.