Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001934

Physical Location & Seq

Genomic Coordinates Forward (+)

22716173 .. 22717096

Gene Structure 924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00018540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCATTTCCAAAGCTCAAGCTTATGATCACCCTTGTGTTCATTCAAGCCCTCATGATCACATCCCACGCCTCAATAGAAGCTGCCCCATCAAACTCAGATATTTTCATAGAATACATAAGAGCTGAATTCAACAATGTCAAGTTTTTTGATGTCCCCATTAACCCAAATGTTGAGTTCCACTTCCTTCTCTCCTTCGCTATTGACTACGACACTTCAATCTCTTCACCAACAAATGGAAATTTCAATTACAATCTGGATGGGATTGACATTGATTACGAGGACTTTCAATCCGATCCCAATACCTTTTCAGAGTGCATTAGAAGACTTATAAAAACCCTCATGGACAATGGTGTGATCAAGTTTGCTTCCATTGCTTCGATTGATGACGATGACAGCACCATAGGGTCTCAGTTCATCGATTATTTCAAGACTCAAAGCTCAAAATACAATGGTTGGAAGGTCTTAGCAAGCTTTAGCACCGATGGGAGTGGTGGATTGTCCCCTGAAAATGGGTTCTTCACTGCCTGCCATAGGCTCAAGAGTGAACAAAATCTTCATGGTATCTTTGTTTGGTCTGCTGATGATTCCAAGAAAAATGATTTTTGCTATGAAAAGCAATCCCAAGATCTTTTGGCAATTCCACACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

216

Amino Acids

24.37

Weight (kDa)

4.6

Isoelectric Point (pI)

37.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001934)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34450 FvH4_6g05690 FvH4_6g27980
malus_domestica	MD03G1105600.v1.1 MD11G1118100.v1.1
prunus_persica	Prupe.4G164000_v2.0.a1 Prupe.6G088400_v2.0.a1
pyrus_communis	pycom11g07790 pycom11g09900
rosa_chinensis	RchiOBHm_Chr3g0454591 RchiOBHm_Chr5g0062101 RchiOBHm_Chr5g0062131 RchiOBHm_Chr5g0062171
rosa_laevigata	RLG00000025431 RLG00000035531 RLG00000035534 RLG00000035538
rosa_multiflora	Rmu_sc0001792.1_g000040 Rmu_sc0002296.1_g000014 Rmu_sc0002296.1_g000017 Rmu_sc0002296.1_g000019 Rmu_sc0009685.1_g000002 Rmu_sc0009685.1_g000009
rosa_roxburghii	Rroxscaffold_1G00018540 Rroxscaffold_1G00018570 Rroxscaffold_1G00018600 Rroxscaffold_1G00018620 Rroxscaffold_6G00424950
rosa_rugosa	Rorug03G0000400 Rorug05G0346000 Rorug05G0346200
rosa_samantha	Rh3AG060200 Rh3BG062300 Rh3CG061100 Rh3DG061900 Rh5BG420900 Rh5BG421100 Rh5CG444900 Rh5CG445200 Rh5DG436000 Rh5DG436100 Rh5DG436200
rosa_wichuraiana	Rw3G004680 Rw5G038380 Rw5G038390 Rw5G038400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	332
AccB7I	CCANNNNNTGG	1 cut(s)	236
AclWI	GGATC	1 cut(s)	290
AcsI	RAATTY	2 cut(s)	128, 241
AfiI	CCNNNNNNNGG	3 cut(s)	236, 512, 534
AgsI	TTSAA	6 cut(s)	47, 133, 219, 247, 290, 430
AleI	CACNNNNGTG	1 cut(s)	35
AluBI	AGCT	6 cut(s)	16, 22, 83, 125, 441, 474
AluI	AGCT	6 cut(s)	16, 22, 83, 125, 441, 474
Alw26I	GTCTC	1 cut(s)	414
AlwI	GGATC	1 cut(s)	290
ApeKI	GCWGC	1 cut(s)	83
ApoI	RAATTY	2 cut(s)	128, 241
AsuHPI	GGTGA	2 cut(s)	22, 219
BbsI	GAAGAC	1 cut(s)	331
BbvI	GCAGC	1 cut(s)	70
BccI	CCATC	3 cut(s)	97, 254, 479
BclI	TGATCA	3 cut(s)	27, 57, 357
BcoDI	GTCTC	1 cut(s)	414
BfaI	CTAG	1 cut(s)	649
BglII	AGATCT	1 cut(s)	628
BisI	GCNGC	1 cut(s)	84
BlsI	GCNGC	1 cut(s)	85
BpiI	GAAGAC	1 cut(s)	331
BpuEI	CTTGAG	1 cut(s)	524
Bsa29I	ATCGAT	1 cut(s)	420
BsaI	GGTCTC	1 cut(s)	414
Bsc4I	CCNNNNNNNGG	3 cut(s)	236, 512, 534
Bse3DI	GCAATG	1 cut(s)	372
BseCI	ATCGAT	1 cut(s)	420
BseGI	GGATG	2 cut(s)	62, 265
BseLI	CCNNNNNNNGG	3 cut(s)	236, 512, 534
BseMI	GCAATG	1 cut(s)	372
BseMII	CTCAG	2 cut(s)	111, 425
BseXI	GCAGC	1 cut(s)	70
BshVI	ATCGAT	1 cut(s)	420
BslFI	GGGAC	2 cut(s)	140, 487
BslI	CCNNNNNNNGG	3 cut(s)	236, 512, 534
BsmAI	GTCTC	1 cut(s)	414
BsmFI	GGGAC	2 cut(s)	140, 487
Bso31I	GGTCTC	1 cut(s)	414
Bsp143I	GATC	5 cut(s)	27, 57, 295, 357, 628
BspCNI	CTCAG	2 cut(s)	110, 424
BspDI	ATCGAT	1 cut(s)	420
BspHI	TCATGA	1 cut(s)	54
BspPI	GGATC	1 cut(s)	290
BspTNI	GGTCTC	1 cut(s)	414
BsrDI	GCAATG	1 cut(s)	372
BssMI	GATC	5 cut(s)	27, 57, 295, 357, 628
Bst6I	CTCTTC	1 cut(s)	229
BstC8I	GCNNGC	2 cut(s)	472, 529
BstDEI	CTNAG	3 cut(s)	97, 411, 466
BstENI	CCTNNNNNAGG	1 cut(s)	532
BstF5I	GGATG	2 cut(s)	62, 265
BstKTI	GATC	5 cut(s)	30, 60, 298, 360, 631
BstMAI	GTCTC	1 cut(s)	414
BstMBI	GATC	5 cut(s)	27, 57, 295, 357, 628
BstMWI	GCNNNNNNNGC	1 cut(s)	374
BstV1I	GCAGC	1 cut(s)	70
BstV2I	GAAGAC	1 cut(s)	331
BstX2I	RGATCY	1 cut(s)	628
BstYI	RGATCY	1 cut(s)	628
Bsu15I	ATCGAT	1 cut(s)	420
BsuTUI	ATCGAT	1 cut(s)	420
BtsCI	GGATG	2 cut(s)	62, 265
BtsI	GCAGTG	1 cut(s)	522
BtsIMutI	CAGTG	1 cut(s)	522
Cac8I	GCNNGC	2 cut(s)	472, 529
CciI	TCATGA	1 cut(s)	54
ClaI	ATCGAT	1 cut(s)	420
CviAII	CATG	3 cut(s)	55, 343, 560
CviJI	RGCY	8 cut(s)	16, 22, 50, 83, 125, 441, 474, 538
CviKI_1	RGCY	8 cut(s)	16, 22, 50, 83, 125, 441, 474, 538
DdeI	CTNAG	3 cut(s)	97, 411, 466
DpnI	GATC	5 cut(s)	29, 59, 297, 359, 630
DpnII	GATC	5 cut(s)	27, 57, 295, 357, 628
Eam1104I	CTCTTC	1 cut(s)	229
EarI	CTCTTC	1 cut(s)	229
Eco31I	GGTCTC	1 cut(s)	414
EcoNI	CCTNNNNNAGG	1 cut(s)	532
EcoRI	GAATTC	1 cut(s)	128
FaeI	CATG	3 cut(s)	58, 346, 563
FaqI	GGGAC	2 cut(s)	140, 487
FatI	CATG	3 cut(s)	54, 342, 559
FbaI	TGATCA	3 cut(s)	27, 57, 357
Fnu4HI	GCNGC	1 cut(s)	84
FokI	GGATG	2 cut(s)	49, 272
Fsp4HI	GCNGC	1 cut(s)	84
FspBI	CTAG	1 cut(s)	649
GluI	GCNGC	1 cut(s)	84
Hin1II	CATG	3 cut(s)	58, 346, 563
HindIII	AAGCTT	2 cut(s)	20, 472
HinfI	GANTC	2 cut(s)	433, 587
HphI	GGTGA	2 cut(s)	22, 219
Hpy166II	GTNNAC	1 cut(s)	548
Hpy188I	TCNGA	3 cut(s)	100, 295, 313
Hpy188III	TCNNGA	4 cut(s)	55, 257, 430, 541
Hpy8I	GTNNAC	1 cut(s)	548
HpyAV	CCTTC	3 cut(s)	197, 205, 454
HpyCH4V	TGCA	1 cut(s)	318
HpyF10VI	GCNNNNNNNGC	1 cut(s)	374
HpyF3I	CTNAG	3 cut(s)	97, 411, 466
Hsp92II	CATG	3 cut(s)	58, 346, 563
Ksp22I	TGATCA	3 cut(s)	27, 57, 357
Kzo9I	GATC	5 cut(s)	27, 57, 295, 357, 628
LpnPI	CCDG	3 cut(s)	242, 519, 541
Lsp1109I	GCAGC	1 cut(s)	70
MaeI	CTAG	1 cut(s)	649
MalI	GATC	5 cut(s)	29, 59, 297, 359, 630
MboI	GATC	5 cut(s)	27, 57, 295, 357, 628
MboII	GAAGA	4 cut(s)	216, 336, 511, 548
MflI	RGATCY	1 cut(s)	628
MluCI	AATT	4 cut(s)	128, 241, 247, 639
MlyI	GAGTC	1 cut(s)	427
MmeI	TCCRAC	1 cut(s)	437
MnlI	CCTC	4 cut(s)	62, 82, 274, 350
MseI	TTAA	1 cut(s)	162
MslI	CAYNNNNRTG	1 cut(s)	35
MwoI	GCNNNNNNNGC	1 cut(s)	374
NdeII	GATC	5 cut(s)	27, 57, 295, 357, 628
NlaIII	CATG	3 cut(s)	58, 346, 563
OliI	CACNNNNGTG	1 cut(s)	35
PagI	TCATGA	1 cut(s)	54
PfeI	GAWTC	1 cut(s)	587
PflMI	CCANNNNNTGG	1 cut(s)	236
PkrI	GCNGC	1 cut(s)	85
PleI	GAGTC	1 cut(s)	427
PpsI	GAGTC	1 cut(s)	427
PsiI	TTATAA	1 cut(s)	332
PsuI	RGATCY	1 cut(s)	628
RseI	CAYNNNNRTG	1 cut(s)	35
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	1 cut(s)	84
Sau3AI	GATC	5 cut(s)	27, 57, 295, 357, 628
SchI	GAGTC	1 cut(s)	427
SetI	ASST	8 cut(s)	18, 24, 85, 127, 308, 443, 465, 476
SmiMI	CAYNNNNRTG	1 cut(s)	35
SmlI	CTYRAG	2 cut(s)	17, 539
SmoI	CTYRAG	2 cut(s)	17, 539
Sse9I	AATT	4 cut(s)	128, 241, 247, 639
SspMI	CTAG	1 cut(s)	649
TaqI	TCGA	2 cut(s)	380, 420
TasI	AATT	4 cut(s)	128, 241, 247, 639
TfiI	GAWTC	1 cut(s)	587
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TscAI	CASTG	1 cut(s)	529
TseI	GCWGC	1 cut(s)	83
TspDTI	ATGAA	5 cut(s)	31, 97, 406, 548, 627
TspRI	CASTG	1 cut(s)	529
Van91I	CCANNNNNTGG	1 cut(s)	236
XagI	CCTNNNNNAGG	1 cut(s)	532
XapI	RAATTY	2 cut(s)	128, 241
XspI	CTAG	1 cut(s)	649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.