Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0001934

Physical Location & Seq

Genomic Coordinates Reverse (-)

10744968 .. 10745888

Gene Structure 921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1118100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGTTAGCAATGGCAGTTCTAAAGCTTAAGCTTGTTATCACCCTTTTCTTTCTTCAAGCCCTCCTCACATCCCATATCCAAGCCGGCCCGGGAAACTCTGATCTCTTTCGCGAATACATAGGAGCCGAATTCGACAACGTCAAGTTTTCGGATGTCCCCATAAACCCTAATGTAGAATTCCACTTCATTCTCTCCTTTGCCATAGACTACGACCCCTCAGGCTCCTCTCCCACCAACGGAAAATTCAATGTCTTTTGGGACTCTGACAACCTCAGCCCTTCCCAAGTTTCCTCCATCAAAAACCAACATTCTAATGTCAAAGTTGCCTTGAGCTTAGGAGGAGATAGTGTCAATAGTGGCTCTGCCTACTTCAACCCTTCCTCGATTGATTCGTGGGTTTCGAATGCTGTTTCTTCACTCACAAGCATCATCCAGCAGTACAACTTGGACGGAATCGACATTGATTATGAGCACTTTCAAGCAGACCCCGATACATTTTCCGAGTGCATTGGAAGGCTTATAACAACCCTAAAGAACAATGGAGTGATCTCATTTGCTTCTATTGCTCCATTTGACGACGATGAAGTTCAGAGCCACTACTTGGCCTTGTGGAAGAGCTATGGCCATTTGATTGACTACGTCAATTTCCAATTTTATGCCTACGATCAGAGCACCACGGTGTCTCAGTTCATCAACTATTTCAACACTCAGAGCTCCAATTACAATGGCGGACAGGTCTTGGCAAGCTTTATCAGTGATGGGAGTGGCGGATTGTCGCCGGAGAACGGGTTTTTTAAAGCCTGCCAGAGGCTCAGAAGTGAGGGAAAACTCGGTGGAATCTTTGTTTGGTCAGCTGATGATTCCAAGAAACTTGGTTTCCGCTACGAAAAGCAATCGGAAGCTCTCTTGGCCAATAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

307

Amino Acids

33.79

Weight (kDa)

4.66

Isoelectric Point (pI)

37.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_18	PF00704	86 - 224	6.5e-14	Glycosyl hydrolases family 18
TIM-barrel_EndoS	PF23916	106 - 236	5.3e-06	Endo-beta-N-acetylglucosaminidase EndoS TIM-barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001934)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34450 FvH4_6g05690 FvH4_6g27980
malus_domestica	MD03G1105600.v1.1 MD11G1118100.v1.1
prunus_persica	Prupe.4G164000_v2.0.a1 Prupe.6G088400_v2.0.a1
pyrus_communis	pycom11g07790 pycom11g09900
rosa_chinensis	RchiOBHm_Chr3g0454591 RchiOBHm_Chr5g0062101 RchiOBHm_Chr5g0062131 RchiOBHm_Chr5g0062171
rosa_laevigata	RLG00000025431 RLG00000035531 RLG00000035534 RLG00000035538
rosa_multiflora	Rmu_sc0001792.1_g000040 Rmu_sc0002296.1_g000014 Rmu_sc0002296.1_g000017 Rmu_sc0002296.1_g000019 Rmu_sc0009685.1_g000002 Rmu_sc0009685.1_g000009
rosa_roxburghii	Rroxscaffold_1G00018540 Rroxscaffold_1G00018570 Rroxscaffold_1G00018600 Rroxscaffold_1G00018620 Rroxscaffold_6G00424950
rosa_rugosa	Rorug03G0000400 Rorug05G0346000 Rorug05G0346200
rosa_samantha	Rh3AG060200 Rh3BG062300 Rh3CG061100 Rh3DG061900 Rh5BG420900 Rh5BG421100 Rh5CG444900 Rh5CG445200 Rh5DG436000 Rh5DG436100 Rh5DG436200
rosa_wichuraiana	Rw3G004680 Rw5G038380 Rw5G038390 Rw5G038400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	521
AccB7I	CCANNNNNTGG	1 cut(s)	601
AccII	CGCG	1 cut(s)	111
AciI	CCGC	3 cut(s)	729, 768, 880
AcoI	YGGCCR	2 cut(s)	622, 909
AcsI	RAATTY	3 cut(s)	128, 176, 242
AfaI	GTAC	1 cut(s)	440
AfiI	CCNNNNNNNGG	4 cut(s)	236, 601, 785, 807
AflII	CTTAAG	1 cut(s)	26
AgsI	TTSAA	5 cut(s)	56, 247, 373, 479, 703
AjuI	GAANNNNNNNTTGG	4 cut(s)	227, 259, 829, 861
AleI	CACNNNNGTG	1 cut(s)	677
AluBI	AGCT	8 cut(s)	25, 31, 333, 618, 714, 747, 854, 902
AluI	AGCT	8 cut(s)	25, 31, 333, 618, 714, 747, 854, 902
Alw21I	GWGCWC	3 cut(s)	474, 674, 716
Alw26I	GTCTC	1 cut(s)	687
Ama87I	CYCGRG	1 cut(s)	88
AoxI	GGCC	4 cut(s)	85, 603, 622, 909
ApoI	RAATTY	3 cut(s)	128, 176, 242
AspS9I	GGNCC	1 cut(s)	86
AsuC2I	CCSGG	2 cut(s)	89, 90
AsuHPI	GGTGA	1 cut(s)	31
AsuII	TTCGAA	1 cut(s)	401
AvaI	CYCGRG	1 cut(s)	88
AxyI	CCTNAGG	1 cut(s)	217
BalI	TGGCCA	2 cut(s)	624, 911
BanII	GRGCYC	1 cut(s)	716
Bbv12I	GWGCWC	3 cut(s)	474, 674, 716
BbvCI	CCTCAGC	1 cut(s)	272
BccI	CCATC	2 cut(s)	302, 752
BcnI	CCSGG	2 cut(s)	89, 90
BcoDI	GTCTC	1 cut(s)	687
BfrI	CTTAAG	1 cut(s)	26
Bme1390I	CCNGG	2 cut(s)	89, 90
BmeT110I	CYCGRG	1 cut(s)	88
BmgT120I	GGNCC	1 cut(s)	86
BmiI	GGNNCC	2 cut(s)	124, 223
BmrFI	CCNGG	2 cut(s)	89, 90
BmsI	GCATC	1 cut(s)	435
Bpu10I	CCTNAGC	2 cut(s)	272, 334
Bpu14I	TTCGAA	1 cut(s)	401
BpuEI	CTTGAG	1 cut(s)	349
BpuMI	CCSGG	2 cut(s)	89, 90
BsaJI	CCNNGG	2 cut(s)	88, 675
BsaXI	ACNNNNNCTCC	4 cut(s)	333, 363, 773, 803
Bsc4I	CCNNNNNNNGG	4 cut(s)	236, 601, 785, 807
Bse118I	RCCGGY	1 cut(s)	83
Bse21I	CCTNAGG	1 cut(s)	217
Bse3DI	GCAATG	1 cut(s)	15
BseDI	CCNNGG	2 cut(s)	88, 675
BseGI	GGATG	3 cut(s)	68, 157, 429
BseLI	CCNNNNNNNGG	4 cut(s)	236, 601, 785, 807
BseMI	GCAATG	1 cut(s)	15
BseMII	CTCAG	5 cut(s)	231, 286, 698, 722, 826
BseRI	GAGGAG	3 cut(s)	53, 214, 354
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	4 cut(s)	87, 605, 624, 911
BsiHKAI	GWGCWC	3 cut(s)	474, 674, 716
BsiHKCI	CYCGRG	1 cut(s)	88
BsiSI	CCGG	3 cut(s)	84, 89, 779
BslFI	GGGAC	2 cut(s)	140, 272
BslI	CCNNNNNNNGG	4 cut(s)	236, 601, 785, 807
BsmAI	GTCTC	1 cut(s)	687
BsmFI	GGGAC	2 cut(s)	140, 272
BsmI	GAATGC	1 cut(s)	409
BsnI	GGCC	4 cut(s)	87, 605, 624, 911
BsoBI	CYCGRG	1 cut(s)	88
Bsp119I	TTCGAA	1 cut(s)	401
Bsp1286I	GDGCHC	3 cut(s)	474, 674, 716
Bsp143I	GATC	3 cut(s)	100, 546, 664
Bsp68I	TCGCGA	1 cut(s)	111
BspACI	CCGC	3 cut(s)	729, 768, 880
BspANI	GGCC	4 cut(s)	87, 605, 624, 911
BspCNI	CTCAG	5 cut(s)	230, 285, 697, 721, 825
BspFNI	CGCG	1 cut(s)	111
BspLI	GGNNCC	2 cut(s)	124, 223
BspQI	GCTCTTC	1 cut(s)	608
BspT104I	TTCGAA	1 cut(s)	401
BspTI	CTTAAG	1 cut(s)	26
BsrDI	GCAATG	1 cut(s)	15
BsrFI	RCCGGY	1 cut(s)	83
BssAI	RCCGGY	1 cut(s)	83
BssECI	CCNNGG	2 cut(s)	88, 675
BssMI	GATC	3 cut(s)	100, 546, 664
Bst4CI	ACNGT	1 cut(s)	679
Bst6I	CTCTTC	1 cut(s)	608
BstAFI	CTTAAG	1 cut(s)	26
BstBI	TTCGAA	1 cut(s)	401
BstC8I	GCNNGC	3 cut(s)	85, 745, 802
BstDEI	CTNAG	6 cut(s)	217, 272, 334, 684, 708, 812
BstDSI	CCRYGG	1 cut(s)	675
BstENI	CCTNNNNNAGG	1 cut(s)	805
BstF5I	GGATG	3 cut(s)	68, 157, 429
BstFNI	CGCG	1 cut(s)	111
BstKTI	GATC	3 cut(s)	103, 549, 667
BstMAI	GTCTC	1 cut(s)	687
BstMBI	GATC	3 cut(s)	100, 546, 664
BstMWI	GCNNNNNNNGC	2 cut(s)	563, 908
BstSCI	CCNGG	2 cut(s)	87, 88
BstUI	CGCG	1 cut(s)	111
Bsu36I	CCTNAGG	1 cut(s)	217
BsuRI	GGCC	4 cut(s)	87, 605, 624, 911
BtgI	CCRYGG	1 cut(s)	675
BtsCI	GGATG	3 cut(s)	68, 157, 429
BtsIMutI	CAGTG	1 cut(s)	760
BtuMI	TCGCGA	1 cut(s)	111
Cac8I	GCNNGC	3 cut(s)	85, 745, 802
Cfr10I	RCCGGY	1 cut(s)	83
Cfr13I	GGNCC	1 cut(s)	86
Cfr9I	CCCGGG	1 cut(s)	88
Csp6I	GTAC	1 cut(s)	439
CviQI	GTAC	1 cut(s)	439
DdeI	CTNAG	6 cut(s)	217, 272, 334, 684, 708, 812
DpnI	GATC	3 cut(s)	102, 548, 666
DpnII	GATC	3 cut(s)	100, 546, 664
DraI	TTTAAA	1 cut(s)	796
EaeI	YGGCCR	2 cut(s)	622, 909
Eam1104I	CTCTTC	1 cut(s)	608
EarI	CTCTTC	1 cut(s)	608
EciI	GGCGGA	2 cut(s)	744, 783
Ecl136II	GAGCTC	1 cut(s)	714
Eco24I	GRGCYC	1 cut(s)	716
Eco53kI	GAGCTC	1 cut(s)	714
Eco81I	CCTNAGG	1 cut(s)	217
Eco88I	CYCGRG	1 cut(s)	88
EcoICRI	GAGCTC	1 cut(s)	714
EcoNI	CCTNNNNNAGG	1 cut(s)	805
EcoRI	GAATTC	2 cut(s)	128, 176
EcoT38I	GRGCYC	1 cut(s)	716
FaiI	YATR	8 cut(s)	75, 119, 161, 203, 468, 521, 621, 657
FaqI	GGGAC	2 cut(s)	140, 272
FokI	GGATG	3 cut(s)	55, 164, 416
FriOI	GRGCYC	1 cut(s)	716
HaeIII	GGCC	4 cut(s)	87, 605, 624, 911
HapII	CCGG	3 cut(s)	84, 89, 779
HindIII	AAGCTT	3 cut(s)	23, 29, 745
HinfI	GANTC	5 cut(s)	260, 389, 453, 837, 860
HpaII	CCGG	3 cut(s)	84, 89, 779
HphI	GGTGA	1 cut(s)	31
Hpy188I	TCNGA	9 cut(s)	100, 151, 265, 502, 591, 669, 711, 815, 898
Hpy188III	TCNNGA	1 cut(s)	110
Hpy99I	CGWCG	1 cut(s)	581
HpyAV	CCTTC	3 cut(s)	288, 387, 507
HpyCH4III	ACNGT	1 cut(s)	679
HpyCH4IV	ACGT	2 cut(s)	138, 639
HpyCH4V	TGCA	1 cut(s)	507
HpyF10VI	GCNNNNNNNGC	2 cut(s)	563, 908
HpyF3I	CTNAG	6 cut(s)	217, 272, 334, 684, 708, 812
HpySE526I	ACGT	2 cut(s)	138, 639
KroI	GCCGGC	1 cut(s)	83
KroNI	GCCGGC	1 cut(s)	85
Kzo9I	GATC	3 cut(s)	100, 546, 664
LguI	GCTCTTC	1 cut(s)	608
LmnI	GCTCC	4 cut(s)	122, 227, 571, 719
LpnPI	CCDG	8 cut(s)	97, 102, 204, 446, 719, 792, 814, 818
LweI	GCATC	1 cut(s)	435
MaeII	ACGT	2 cut(s)	138, 639
MalI	GATC	3 cut(s)	102, 548, 666
MboI	GATC	3 cut(s)	100, 546, 664
MboII	GAAGA	3 cut(s)	44, 405, 625
MhlI	GDGCHC	3 cut(s)	474, 674, 716
MlsI	TGGCCA	2 cut(s)	624, 911
MluCI	AATT	7 cut(s)	128, 176, 242, 643, 650, 718, 916
MluNI	TGGCCA	2 cut(s)	624, 911
MlyI	GAGTC	1 cut(s)	254
Mox20I	TGGCCA	2 cut(s)	624, 911
MroNI	GCCGGC	1 cut(s)	83
MscI	TGGCCA	2 cut(s)	624, 911
MseI	TTAA	2 cut(s)	27, 795
MslI	CAYNNNNRTG	2 cut(s)	312, 677
Msp20I	TGGCCA	2 cut(s)	624, 911
MspA1I	CMGCKG	1 cut(s)	854
MspCI	CTTAAG	1 cut(s)	26
MspI	CCGG	3 cut(s)	84, 89, 779
MspR9I	CCNGG	2 cut(s)	89, 90
Mva1269I	GAATGC	1 cut(s)	409
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	2 cut(s)	563, 908
NaeI	GCCGGC	1 cut(s)	85
NciI	CCSGG	2 cut(s)	89, 90
NdeII	GATC	3 cut(s)	100, 546, 664
NgoMIV	GCCGGC	1 cut(s)	83
NlaIV	GGNNCC	2 cut(s)	124, 223
NruI	TCGCGA	1 cut(s)	111
NspV	TTCGAA	1 cut(s)	401
OliI	CACNNNNGTG	1 cut(s)	677
PciSI	GCTCTTC	1 cut(s)	608
PcsI	WCGNNNNNNNCGW	2 cut(s)	389, 398
PctI	GAATGC	1 cut(s)	409
PdiI	GCCGGC	1 cut(s)	85
PfeI	GAWTC	4 cut(s)	389, 453, 837, 860
PflFI	GACNNNGTC	2 cut(s)	137, 638
PflMI	CCANNNNNTGG	1 cut(s)	601
PleI	GAGTC	1 cut(s)	254
PpsI	GAGTC	1 cut(s)	254
PsiI	TTATAA	1 cut(s)	521
Psp124BI	GAGCTC	1 cut(s)	716
PspN4I	GGNNCC	2 cut(s)	124, 223
PspPI	GGNCC	1 cut(s)	86
PsyI	GACNNNGTC	2 cut(s)	137, 638
PvuII	CAGCTG	1 cut(s)	854
RruI	TCGCGA	1 cut(s)	111
RsaI	GTAC	1 cut(s)	440
RsaNI	GTAC	1 cut(s)	439
RseI	CAYNNNNRTG	2 cut(s)	312, 677
SacI	GAGCTC	1 cut(s)	716
SapI	GCTCTTC	1 cut(s)	608
SaqAI	TTAA	2 cut(s)	27, 795
Sau3AI	GATC	3 cut(s)	100, 546, 664
Sau96I	GGNCC	1 cut(s)	86
SchI	GAGTC	1 cut(s)	254
ScrFI	CCNGG	2 cut(s)	89, 90
SduI	GDGCHC	3 cut(s)	474, 674, 716
SfaNI	GCATC	1 cut(s)	435
SfuI	TTCGAA	1 cut(s)	401
SmaI	CCCGGG	1 cut(s)	90
SmiMI	CAYNNNNRTG	2 cut(s)	312, 677
SmlI	CTYRAG	2 cut(s)	26, 328
SmoI	CTYRAG	2 cut(s)	26, 328
Sse9I	AATT	7 cut(s)	128, 176, 242, 643, 650, 718, 916
SsiI	CCGC	3 cut(s)	729, 768, 880
SstI	GAGCTC	1 cut(s)	716
StyD4I	CCNGG	2 cut(s)	87, 88
TaaI	ACNGT	1 cut(s)	679
TaiI	ACGT	2 cut(s)	141, 642
TaqI	TCGA	4 cut(s)	132, 383, 401, 456
TasI	AATT	7 cut(s)	128, 176, 242, 643, 650, 718, 916
TatI	WGTACW	1 cut(s)	438
TfiI	GAWTC	4 cut(s)	389, 453, 837, 860
Tru1I	TTAA	2 cut(s)	27, 795
Tru9I	TTAA	2 cut(s)	27, 795
TscAI	CASTG	1 cut(s)	760
TspDTI	ATGAA	3 cut(s)	175, 597, 679
TspGWI	ACGGA	2 cut(s)	252, 465
TspMI	CCCGGG	1 cut(s)	88
TspRI	CASTG	1 cut(s)	760
Tth111I	GACNNNGTC	2 cut(s)	137, 638
Van91I	CCANNNNNTGG	1 cut(s)	601
Vha464I	CTTAAG	1 cut(s)	26
XagI	CCTNNNNNAGG	1 cut(s)	805
XapI	RAATTY	3 cut(s)	128, 176, 242
XmaI	CCCGGG	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.