Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001934

Physical Location & Seq

Genomic Coordinates Forward (+)

68064852 .. 68065772

Gene Structure 921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG420900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGCACTTCCAAAGCTTAAGCTTATCATCACCCTTGTGTTCATTCAAGCCCTCATCATATCCCACACATCGATCCAAGCAGCTCCAGAAAACTCAGATATCTTCCGAGAATATATAGGAGCTGAATTCAACAATGTCAAGTTTTCTGATGTCCCCATTAACCCAAATGTTGAGTTCCACTTCCTTCTCTCCTTTGCCATCGACTATGACACTTCTGGTTCTTCACCCACAAATGGAAATTTCAACGTCTTTTGGGACACTGACAACCTCGGTGCCTCTCAAGTTTCCGCCATTAAAAATGACCATTCAAATGTGAAAGTTGGCTTAAGCTTAGGAGGGGACAGTGTCAATAGTGGCTCTTGTTACTTCAACCCTTCCTCAGTTGATTCATGGGTTTCTAATGCTGTTTCTTCACTCACAAGTATCATCCAGCAGTACAATCTAGATGGGATTGATATTGATTACGAGCACTTTAAATCTGACCCCAACACCTTTTCCGAGTGCATCGGAAGGCTTATAAAAACCCTCAAGGACAAAGGAGTCATCAAGTTTGCTTCCATTGCTCCTTTTGATGACGATGACGTTCAGAGCCACTACTTGGCCTTGTGGAAGAACTACGGGCAGTTGATAGACTACGTGAATTTCCAGTTCTATGCATATGATCAGAGCACCACTGTGTCTCAGTTCATCAATTATTTCAAGAAGCAAAGCTCAAATTACAATGGCGGGAAGGTCTTGGCGAGCTTTAGCACCGATGGGAGTGGTGGATTGTCCCCTGAAAATGGGTTCTTCACTGCCTGCCATAGGCTCAAGAGTGAACAAAACCTTAATGGTATCTTTGTTTGGTCTGCTGATGATTCCAAGAAAAATGGTTTCCGCTATGAAAAGCAATCCCAAGCTCTATTAGCAACTTCACACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

306

Amino Acids

33.94

Weight (kDa)

5.07

Isoelectric Point (pI)

30.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_18	PF00704	83 - 223	1e-13	Glycosyl hydrolases family 18
TIM-barrel_EndoS	PF23916	134 - 236	3.8e-07	Endo-beta-N-acetylglucosaminidase EndoS TIM-barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001934)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34450 FvH4_6g05690 FvH4_6g27980
malus_domestica	MD03G1105600.v1.1 MD11G1118100.v1.1
prunus_persica	Prupe.4G164000_v2.0.a1 Prupe.6G088400_v2.0.a1
pyrus_communis	pycom11g07790 pycom11g09900
rosa_chinensis	RchiOBHm_Chr3g0454591 RchiOBHm_Chr5g0062101 RchiOBHm_Chr5g0062131 RchiOBHm_Chr5g0062171
rosa_laevigata	RLG00000025431 RLG00000035531 RLG00000035534 RLG00000035538
rosa_multiflora	Rmu_sc0001792.1_g000040 Rmu_sc0002296.1_g000014 Rmu_sc0002296.1_g000017 Rmu_sc0002296.1_g000019 Rmu_sc0009685.1_g000002 Rmu_sc0009685.1_g000009
rosa_roxburghii	Rroxscaffold_1G00018540 Rroxscaffold_1G00018570 Rroxscaffold_1G00018600 Rroxscaffold_1G00018620 Rroxscaffold_6G00424950
rosa_rugosa	Rorug03G0000400 Rorug05G0346000 Rorug05G0346200
rosa_samantha	Rh3AG060200 Rh3BG062300 Rh3CG061100 Rh3DG061900 Rh5BG420900 Rh5BG421100 Rh5CG444900 Rh5CG445200 Rh5DG436000 Rh5DG436100 Rh5DG436200
rosa_wichuraiana	Rw3G004680 Rw5G038380 Rw5G038390 Rw5G038400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	518
AasI	GACNNNNNNGTC	1 cut(s)	539
AccB1I	GGYRCC	1 cut(s)	272
AccB7I	CCANNNNNTGG	1 cut(s)	598
AciI	CCGC	3 cut(s)	288, 726, 877
AclWI	GGATC	1 cut(s)	67
AcsI	RAATTY	3 cut(s)	125, 238, 640
AfaI	GTAC	1 cut(s)	437
AfiI	CCNNNNNNNGG	4 cut(s)	233, 598, 782, 804
AflII	CTTAAG	2 cut(s)	17, 325
AgsI	TTSAA	6 cut(s)	47, 130, 244, 309, 370, 700
AleI	CACNNNNGTG	2 cut(s)	35, 674
AluBI	AGCT	8 cut(s)	16, 22, 83, 122, 330, 711, 744, 899
AluI	AGCT	8 cut(s)	16, 22, 83, 122, 330, 711, 744, 899
Alw21I	GWGCWC	2 cut(s)	471, 671
Alw26I	GTCTC	1 cut(s)	684
AlwI	GGATC	1 cut(s)	67
AoxI	GGCC	1 cut(s)	600
ApeKI	GCWGC	1 cut(s)	80
ApoI	RAATTY	3 cut(s)	125, 238, 640
AsuHPI	GGTGA	2 cut(s)	22, 216
BanI	GGYRCC	1 cut(s)	272
Bbv12I	GWGCWC	2 cut(s)	471, 671
BbvI	GCAGC	1 cut(s)	92
BccI	CCATC	3 cut(s)	206, 440, 749
BclI	TGATCA	1 cut(s)	661
BcoDI	GTCTC	1 cut(s)	684
BfaI	CTAG	2 cut(s)	443, 919
BfrI	CTTAAG	2 cut(s)	17, 325
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
BmiI	GGNNCC	1 cut(s)	274
BmsI	GCATC	1 cut(s)	513
BpmI	CTGGAG	1 cut(s)	69
Bpu10I	CCTNAGC	1 cut(s)	331
BpuEI	CTTGAG	3 cut(s)	264, 512, 794
Bsa29I	ATCGAT	1 cut(s)	71
BsaAI	YACGTR	1 cut(s)	637
BsaJI	CCNNGG	1 cut(s)	268
Bsc4I	CCNNNNNNNGG	4 cut(s)	233, 598, 782, 804
Bse1I	ACTGG	1 cut(s)	646
Bse3DI	GCAATG	1 cut(s)	558
BseCI	ATCGAT	1 cut(s)	71
BseDI	CCNNGG	1 cut(s)	268
BseGI	GGATG	1 cut(s)	426
BseLI	CCNNNNNNNGG	4 cut(s)	233, 598, 782, 804
BseMI	GCAATG	1 cut(s)	558
BseMII	CTCAG	3 cut(s)	108, 393, 695
BseNI	ACTGG	1 cut(s)	646
BseXI	GCAGC	1 cut(s)	92
BshFI	GGCC	1 cut(s)	602
BshNI	GGYRCC	1 cut(s)	272
BshVI	ATCGAT	1 cut(s)	71
BsiHKAI	GWGCWC	2 cut(s)	471, 671
BslFI	GGGAC	4 cut(s)	137, 269, 353, 757
BslI	CCNNNNNNNGG	4 cut(s)	233, 598, 782, 804
BsmAI	GTCTC	1 cut(s)	684
BsmFI	GGGAC	4 cut(s)	137, 269, 353, 757
BsnI	GGCC	1 cut(s)	602
Bsp1286I	GDGCHC	2 cut(s)	471, 671
Bsp143I	GATC	2 cut(s)	72, 661
BspACI	CCGC	3 cut(s)	288, 726, 877
BspANI	GGCC	1 cut(s)	602
BspCNI	CTCAG	3 cut(s)	107, 392, 694
BspDI	ATCGAT	1 cut(s)	71
BspLI	GGNNCC	1 cut(s)	274
BspPI	GGATC	1 cut(s)	67
BspT107I	GGYRCC	1 cut(s)	272
BspTI	CTTAAG	2 cut(s)	17, 325
BsrDI	GCAATG	1 cut(s)	558
BsrI	ACTGG	1 cut(s)	646
BssECI	CCNNGG	1 cut(s)	268
BssMI	GATC	2 cut(s)	72, 661
Bst4CI	ACNGT	2 cut(s)	344, 676
BstAFI	CTTAAG	2 cut(s)	17, 325
BstBAI	YACGTR	1 cut(s)	637
BstC8I	GCNNGC	2 cut(s)	742, 799
BstDEI	CTNAG	4 cut(s)	94, 331, 379, 681
BstENI	CCTNNNNNAGG	1 cut(s)	802
BstF5I	GGATG	1 cut(s)	426
BstKTI	GATC	2 cut(s)	75, 664
BstMAI	GTCTC	1 cut(s)	684
BstMBI	GATC	2 cut(s)	72, 661
BstMWI	GCNNNNNNNGC	2 cut(s)	560, 905
BstV1I	GCAGC	1 cut(s)	92
Bsu15I	ATCGAT	1 cut(s)	71
BsuRI	GGCC	1 cut(s)	602
BsuTUI	ATCGAT	1 cut(s)	71
BtsCI	GGATG	1 cut(s)	426
BtsI	GCAGTG	1 cut(s)	792
BtsIMutI	CAGTG	4 cut(s)	258, 349, 672, 792
Cac8I	GCNNGC	2 cut(s)	742, 799
ClaI	ATCGAT	1 cut(s)	71
Csp6I	GTAC	1 cut(s)	436
CviAII	CATG	1 cut(s)	390
CviQI	GTAC	1 cut(s)	436
DdeI	CTNAG	4 cut(s)	94, 331, 379, 681
DpnI	GATC	2 cut(s)	74, 663
DpnII	GATC	2 cut(s)	72, 661
DraI	TTTAAA	1 cut(s)	475
DrdI	GACNNNNNNGTC	1 cut(s)	539
DseDI	GACNNNNNNGTC	1 cut(s)	539
EciI	GGCGGA	1 cut(s)	277
Eco32I	GATATC	1 cut(s)	100
EcoNI	CCTNNNNNAGG	1 cut(s)	802
EcoRI	GAATTC	1 cut(s)	125
EcoRV	GATATC	1 cut(s)	100
EcoT22I	ATGCAT	1 cut(s)	658
FaeI	CATG	1 cut(s)	393
FaqI	GGGAC	4 cut(s)	137, 269, 353, 757
FatI	CATG	1 cut(s)	389
FauI	CCCGC	1 cut(s)	719
FauNDI	CATATG	1 cut(s)	658
FbaI	TGATCA	1 cut(s)	661
Fnu4HI	GCNGC	1 cut(s)	81
FokI	GGATG	1 cut(s)	413
Fsp4HI	GCNGC	1 cut(s)	81
FspBI	CTAG	2 cut(s)	443, 919
GluI	GCNGC	1 cut(s)	81
GsuI	CTGGAG	1 cut(s)	69
HaeIII	GGCC	1 cut(s)	602
Hin1II	CATG	1 cut(s)	393
HindIII	AAGCTT	3 cut(s)	14, 20, 328
HinfI	GANTC	3 cut(s)	386, 540, 857
HphI	GGTGA	2 cut(s)	22, 216
Hpy166II	GTNNAC	1 cut(s)	818
Hpy188I	TCNGA	8 cut(s)	97, 107, 148, 481, 499, 509, 588, 666
Hpy188III	TCNNGA	4 cut(s)	86, 443, 700, 811
Hpy8I	GTNNAC	1 cut(s)	818
HpyAV	CCTTC	4 cut(s)	194, 384, 504, 724
HpyCH4III	ACNGT	2 cut(s)	344, 676
HpyCH4IV	ACGT	3 cut(s)	246, 582, 636
HpyCH4V	TGCA	2 cut(s)	504, 656
HpyF10VI	GCNNNNNNNGC	2 cut(s)	560, 905
HpyF3I	CTNAG	4 cut(s)	94, 331, 379, 681
HpySE526I	ACGT	3 cut(s)	246, 582, 636
Hsp92II	CATG	1 cut(s)	393
Ksp22I	TGATCA	1 cut(s)	661
Kzo9I	GATC	2 cut(s)	72, 661
LmnI	GCTCC	3 cut(s)	88, 119, 568
LpnPI	CCDG	6 cut(s)	99, 201, 443, 659, 789, 811
Lsp1109I	GCAGC	1 cut(s)	92
LweI	GCATC	1 cut(s)	513
MaeI	CTAG	2 cut(s)	443, 919
MaeII	ACGT	3 cut(s)	246, 582, 636
MaeIII	GTNAC	1 cut(s)	362
MalI	GATC	2 cut(s)	74, 663
MboI	GATC	2 cut(s)	72, 661
MboII	GAAGA	5 cut(s)	94, 213, 402, 622, 781
MhlI	GDGCHC	2 cut(s)	471, 671
MluCI	AATT	5 cut(s)	125, 238, 640, 691, 715
MlyI	GAGTC	1 cut(s)	549
MnlI	CCTC	6 cut(s)	62, 278, 286, 329, 388, 536
Mph1103I	ATGCAT	1 cut(s)	658
MseI	TTAA	6 cut(s)	18, 159, 294, 326, 474, 828
MslI	CAYNNNNRTG	3 cut(s)	35, 309, 674
MspCI	CTTAAG	2 cut(s)	17, 325
MwoI	GCNNNNNNNGC	2 cut(s)	560, 905
NdeI	CATATG	1 cut(s)	658
NdeII	GATC	2 cut(s)	72, 661
NlaIII	CATG	1 cut(s)	393
NlaIV	GGNNCC	1 cut(s)	274
NsiI	ATGCAT	1 cut(s)	658
OliI	CACNNNNGTG	2 cut(s)	35, 674
PfeI	GAWTC	2 cut(s)	386, 857
PflFI	GACNNNGTC	1 cut(s)	344
PflMI	CCANNNNNTGG	1 cut(s)	598
PkrI	GCNGC	1 cut(s)	82
PleI	GAGTC	1 cut(s)	548
PpsI	GAGTC	1 cut(s)	548
Ppu21I	YACGTR	1 cut(s)	637
PsiI	TTATAA	1 cut(s)	518
PspN4I	GGNNCC	1 cut(s)	274
PsyI	GACNNNGTC	1 cut(s)	344
RsaI	GTAC	1 cut(s)	437
RsaNI	GTAC	1 cut(s)	436
RseI	CAYNNNNRTG	3 cut(s)	35, 309, 674
SaqAI	TTAA	6 cut(s)	18, 159, 294, 326, 474, 828
SatI	GCNGC	1 cut(s)	81
Sau3AI	GATC	2 cut(s)	72, 661
SchI	GAGTC	1 cut(s)	549
SduI	GDGCHC	2 cut(s)	471, 671
SfaNI	GCATC	1 cut(s)	513
SmiMI	CAYNNNNRTG	3 cut(s)	35, 309, 674
SmlI	CTYRAG	5 cut(s)	17, 279, 325, 527, 809
SmoI	CTYRAG	5 cut(s)	17, 279, 325, 527, 809
Sse9I	AATT	5 cut(s)	125, 238, 640, 691, 715
SsiI	CCGC	3 cut(s)	288, 726, 877
SspMI	CTAG	2 cut(s)	443, 919
TaaI	ACNGT	2 cut(s)	344, 676
TaiI	ACGT	3 cut(s)	249, 585, 639
TaqI	TCGA	2 cut(s)	71, 201
TasI	AATT	5 cut(s)	125, 238, 640, 691, 715
TatI	WGTACW	1 cut(s)	435
TfiI	GAWTC	2 cut(s)	386, 857
Tru1I	TTAA	6 cut(s)	18, 159, 294, 326, 474, 828
Tru9I	TTAA	6 cut(s)	18, 159, 294, 326, 474, 828
TscAI	CASTG	4 cut(s)	265, 349, 679, 799
TseI	GCWGC	1 cut(s)	80
TspDTI	ATGAA	4 cut(s)	31, 378, 676, 897
TspRI	CASTG	4 cut(s)	265, 349, 679, 799
Tth111I	GACNNNGTC	1 cut(s)	344
Van91I	CCANNNNNTGG	1 cut(s)	598
Vha464I	CTTAAG	2 cut(s)	17, 325
XagI	CCTNNNNNAGG	1 cut(s)	802
XapI	RAATTY	3 cut(s)	125, 238, 640
XbaI	TCTAGA	1 cut(s)	442
XspI	CTAG	2 cut(s)	443, 919
Zsp2I	ATGCAT	1 cut(s)	658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.