Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001934

Physical Location & Seq

Genomic Coordinates Reverse (-)

3241836 .. 3242747

Gene Structure 912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g05690.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGCAGTTCCAAAGCTGAAGCTTATGATCAGCCTTGTATTCATTCAAGCCCTCATCACTTCCATCCAAGCTGCTCCATCAAACTCAGATATCTTCAGAGAATACATAGGAGCTGAATTCAACAATGTCAAGTTTTCCGATGTCCCCATTAACCCGAATGTTGAGTTCCACTTCCTTCTCTCCTTTGCCATTGACTACGACACCTCAGGTTCTTCACCCACCAATGGAAACTTCAACGTCTTTTGGGACACTGACAACCTCGGCGCCTCTCAAGTTTCAGACATCAAGAATTCCCATTCAAATGTGAAAGTTGGATTAAGCTTAGGAGGGGACAGTGTCAATAGTGGCTCTGCTTACTTCAACCCTTCCTCAGTTGATTCTTGGGTTTCTAATGCTGTTTCTTCACTCACAAGTATCATCCAGCAGTACAATCTAGATGGGATTGACATCGATTACGAGCACTTTAAATCTGATCCTAACACCTTCTCCGAGTGCATTGGAAGGCTGATAAAAACACTCAAGGACAATGGTGTCATCAAGTTTGCTTCCATTGCTCCTTTTGATGACGACGACATTCAGAGCCACTACTTGGCCTTGTGGAAGAACTACGGCCAGTTGATAGACTATGTGAATTTCCAGTTCTATGCATATGATCAGAGCACCACTGTGTCTCAGTTCATCAACTATTTCAAGAAGCAAAGCTCAAACTACAGCGGAGGGAAGGTTTTAGCAAGCTTTAGCACCGATGGGAGTGGTGGATTGTCCCCTGAAAATGGGTTCTTCACTGCCTGCCATAGGCTCAAGAGTGAACAAAACCTTCATGGCATCTTTGTTTGGTCTGCTGATGATTCCAAGAAAAATGGTTTTCGCTATGAAAAGCAATCCCAAGCCCTTTTGGCAATTCCACACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

304

Amino Acids

33.55

Weight (kDa)

5.05

Isoelectric Point (pI)

30.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_18	PF00704	80 - 220	2.5e-14	Glycosyl hydrolases family 18
TIM-barrel_EndoS	PF23916	128 - 233	7.4e-07	Endo-beta-N-acetylglucosaminidase EndoS TIM-barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001934)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34450 FvH4_6g05690 FvH4_6g27980
malus_domestica	MD03G1105600.v1.1 MD11G1118100.v1.1
prunus_persica	Prupe.4G164000_v2.0.a1 Prupe.6G088400_v2.0.a1
pyrus_communis	pycom11g07790 pycom11g09900
rosa_chinensis	RchiOBHm_Chr3g0454591 RchiOBHm_Chr5g0062101 RchiOBHm_Chr5g0062131 RchiOBHm_Chr5g0062171
rosa_laevigata	RLG00000025431 RLG00000035531 RLG00000035534 RLG00000035538
rosa_multiflora	Rmu_sc0001792.1_g000040 Rmu_sc0002296.1_g000014 Rmu_sc0002296.1_g000017 Rmu_sc0002296.1_g000019 Rmu_sc0009685.1_g000002 Rmu_sc0009685.1_g000009
rosa_roxburghii	Rroxscaffold_1G00018540 Rroxscaffold_1G00018570 Rroxscaffold_1G00018600 Rroxscaffold_1G00018620 Rroxscaffold_6G00424950
rosa_rugosa	Rorug03G0000400 Rorug05G0346000 Rorug05G0346200
rosa_samantha	Rh3AG060200 Rh3BG062300 Rh3CG061100 Rh3DG061900 Rh5BG420900 Rh5BG421100 Rh5CG444900 Rh5CG445200 Rh5DG436000 Rh5DG436100 Rh5DG436200
rosa_wichuraiana	Rw3G004680 Rw5G038380 Rw5G038390 Rw5G038400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	530
AccB1I	GGYRCC	1 cut(s)	263
AccB7I	CCANNNNNTGG	1 cut(s)	589
AciI	CCGC	1 cut(s)	714
AclWI	GGATC	1 cut(s)	467
AcoI	YGGCCR	1 cut(s)	610
AcsI	RAATTY	3 cut(s)	116, 289, 631
AcuI	CTGAAG	2 cut(s)	38, 79
AcyI	GRCGYC	1 cut(s)	264
AfaI	GTAC	1 cut(s)	428
AfiI	CCNNNNNNNGG	4 cut(s)	224, 589, 773, 795
AgsI	TTSAA	6 cut(s)	47, 121, 235, 300, 361, 691
AjuI	GAANNNNNNNTTGG	2 cut(s)	215, 247
AleI	CACNNNNGTG	1 cut(s)	665
AluBI	AGCT	7 cut(s)	16, 22, 71, 113, 321, 702, 735
AluI	AGCT	7 cut(s)	16, 22, 71, 113, 321, 702, 735
Alw21I	GWGCWC	2 cut(s)	462, 662
Alw26I	GTCTC	1 cut(s)	675
AlwI	GGATC	1 cut(s)	467
AoxI	GGCC	2 cut(s)	591, 610
ApeKI	GCWGC	1 cut(s)	71
ApoI	RAATTY	3 cut(s)	116, 289, 631
AspLEI	GCGC	1 cut(s)	266
AsuHPI	GGTGA	1 cut(s)	207
AxyI	CCTNAGG	1 cut(s)	205
BanI	GGYRCC	1 cut(s)	263
Bbv12I	GWGCWC	2 cut(s)	462, 662
BbvI	GCAGC	1 cut(s)	58
BccI	CCATC	4 cut(s)	71, 85, 431, 740
BceAI	ACGGC	1 cut(s)	625
BclI	TGATCA	2 cut(s)	27, 652
BcoDI	GTCTC	1 cut(s)	675
BfaI	CTAG	2 cut(s)	434, 910
BfmI	CTRYAG	1 cut(s)	709
BfoI	RGCGCY	1 cut(s)	267
BglI	GCCNNNNNGGC	1 cut(s)	896
BisI	GCNGC	1 cut(s)	72
BlsI	GCNGC	1 cut(s)	73
BmiI	GGNNCC	1 cut(s)	265
BmsI	GCATC	1 cut(s)	834
Bpu10I	CCTNAGC	1 cut(s)	322
BpuEI	CTTGAG	3 cut(s)	255, 503, 785
Bsa29I	ATCGAT	1 cut(s)	450
BsaBI	GATNNNNATC	1 cut(s)	446
BsaHI	GRCGYC	1 cut(s)	264
BsaJI	CCNNGG	1 cut(s)	259
BsaXI	ACNNNNNCTCC	4 cut(s)	470, 500, 708, 738
Bsc4I	CCNNNNNNNGG	4 cut(s)	224, 589, 773, 795
Bse1I	ACTGG	2 cut(s)	613, 637
Bse21I	CCTNAGG	1 cut(s)	205
Bse3DI	GCAATG	1 cut(s)	549
Bse8I	GATNNNNATC	1 cut(s)	446
BseCI	ATCGAT	1 cut(s)	450
BseDI	CCNNGG	1 cut(s)	259
BseGI	GGATG	2 cut(s)	63, 417
BseJI	GATNNNNATC	1 cut(s)	446
BseLI	CCNNNNNNNGG	4 cut(s)	224, 589, 773, 795
BseMI	GCAATG	1 cut(s)	549
BseMII	CTCAG	4 cut(s)	99, 219, 384, 686
BseNI	ACTGG	2 cut(s)	613, 637
BseXI	GCAGC	1 cut(s)	58
BshFI	GGCC	2 cut(s)	593, 612
BshNI	GGYRCC	1 cut(s)	263
BshVI	ATCGAT	1 cut(s)	450
BsiHKAI	GWGCWC	2 cut(s)	462, 662
BslFI	GGGAC	4 cut(s)	128, 260, 344, 748
BslI	CCNNNNNNNGG	4 cut(s)	224, 589, 773, 795
BsmAI	GTCTC	1 cut(s)	675
BsmFI	GGGAC	4 cut(s)	128, 260, 344, 748
BsnI	GGCC	2 cut(s)	593, 612
Bsp1286I	GDGCHC	2 cut(s)	462, 662
Bsp143I	GATC	3 cut(s)	27, 472, 652
BspACI	CCGC	1 cut(s)	714
BspANI	GGCC	2 cut(s)	593, 612
BspCNI	CTCAG	4 cut(s)	98, 218, 383, 685
BspDI	ATCGAT	1 cut(s)	450
BspLI	GGNNCC	1 cut(s)	265
BspPI	GGATC	1 cut(s)	467
BspT107I	GGYRCC	1 cut(s)	263
BsrDI	GCAATG	1 cut(s)	549
BsrI	ACTGG	2 cut(s)	613, 637
BssECI	CCNNGG	1 cut(s)	259
BssMI	GATC	3 cut(s)	27, 472, 652
BssNI	GRCGYC	1 cut(s)	264
Bst4CI	ACNGT	2 cut(s)	335, 667
BstACI	GRCGYC	1 cut(s)	264
BstC8I	GCNNGC	2 cut(s)	733, 790
BstDEI	CTNAG	5 cut(s)	85, 205, 322, 370, 672
BstENI	CCTNNNNNAGG	1 cut(s)	793
BstF5I	GGATG	2 cut(s)	63, 417
BstH2I	RGCGCY	1 cut(s)	267
BstHHI	GCGC	1 cut(s)	266
BstKTI	GATC	3 cut(s)	30, 475, 655
BstMAI	GTCTC	1 cut(s)	675
BstMBI	GATC	3 cut(s)	27, 472, 652
BstMWI	GCNNNNNNNGC	2 cut(s)	551, 896
BstSFI	CTRYAG	1 cut(s)	709
BstV1I	GCAGC	1 cut(s)	58
Bsu15I	ATCGAT	1 cut(s)	450
Bsu36I	CCTNAGG	1 cut(s)	205
BsuRI	GGCC	2 cut(s)	593, 612
BsuTUI	ATCGAT	1 cut(s)	450
BtsCI	GGATG	2 cut(s)	63, 417
BtsI	GCAGTG	1 cut(s)	783
BtsIMutI	CAGTG	4 cut(s)	249, 340, 663, 783
Cac8I	GCNNGC	2 cut(s)	733, 790
CfoI	GCGC	1 cut(s)	266
ClaI	ATCGAT	1 cut(s)	450
Csp6I	GTAC	1 cut(s)	427
CviAII	CATG	1 cut(s)	821
CviQI	GTAC	1 cut(s)	427
DdeI	CTNAG	5 cut(s)	85, 205, 322, 370, 672
DinI	GGCGCC	1 cut(s)	265
DpnI	GATC	3 cut(s)	29, 474, 654
DpnII	GATC	3 cut(s)	27, 472, 652
DraI	TTTAAA	1 cut(s)	466
DrdI	GACNNNNNNGTC	1 cut(s)	530
DseDI	GACNNNNNNGTC	1 cut(s)	530
EaeI	YGGCCR	1 cut(s)	610
Eco32I	GATATC	1 cut(s)	91
Eco57I	CTGAAG	2 cut(s)	38, 79
Eco81I	CCTNAGG	1 cut(s)	205
EcoNI	CCTNNNNNAGG	1 cut(s)	793
EcoRI	GAATTC	2 cut(s)	116, 289
EcoRV	GATATC	1 cut(s)	91
EcoT22I	ATGCAT	1 cut(s)	649
EgeI	GGCGCC	1 cut(s)	265
EheI	GGCGCC	1 cut(s)	265
FaeI	CATG	1 cut(s)	824
FaiI	YATR	9 cut(s)	26, 107, 627, 645, 649, 651, 795, 822, 873
FaqI	GGGAC	4 cut(s)	128, 260, 344, 748
FatI	CATG	1 cut(s)	820
FauNDI	CATATG	1 cut(s)	649
FbaI	TGATCA	2 cut(s)	27, 652
Fnu4HI	GCNGC	1 cut(s)	72
FokI	GGATG	2 cut(s)	50, 404
Fsp4HI	GCNGC	1 cut(s)	72
FspBI	CTAG	2 cut(s)	434, 910
GlaI	GCGC	1 cut(s)	265
GluI	GCNGC	1 cut(s)	72
HaeII	RGCGCY	1 cut(s)	267
HaeIII	GGCC	2 cut(s)	593, 612
HhaI	GCGC	1 cut(s)	266
Hin1I	GRCGYC	1 cut(s)	264
Hin1II	CATG	1 cut(s)	824
Hin6I	GCGC	1 cut(s)	264
HinP1I	GCGC	1 cut(s)	264
HindIII	AAGCTT	3 cut(s)	20, 319, 733
HinfI	GANTC	2 cut(s)	377, 848
HphI	GGTGA	1 cut(s)	207
Hpy166II	GTNNAC	1 cut(s)	809
Hpy188I	TCNGA	8 cut(s)	88, 98, 139, 280, 472, 490, 579, 657
Hpy188III	TCNNGA	4 cut(s)	286, 434, 691, 802
Hpy8I	GTNNAC	1 cut(s)	809
Hpy99I	CGWCG	1 cut(s)	572
HpyAV	CCTTC	6 cut(s)	185, 375, 493, 495, 715, 827
HpyCH4III	ACNGT	2 cut(s)	335, 667
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	2 cut(s)	495, 647
HpyF10VI	GCNNNNNNNGC	2 cut(s)	551, 896
HpyF3I	CTNAG	5 cut(s)	85, 205, 322, 370, 672
HpySE526I	ACGT	1 cut(s)	237
Hsp92I	GRCGYC	1 cut(s)	264
Hsp92II	CATG	1 cut(s)	824
HspAI	GCGC	1 cut(s)	264
KasI	GGCGCC	1 cut(s)	263
Ksp22I	TGATCA	2 cut(s)	27, 652
Kzo9I	GATC	3 cut(s)	27, 472, 652
LmnI	GCTCC	3 cut(s)	79, 110, 559
LpnPI	CCDG	6 cut(s)	192, 434, 626, 650, 780, 802
Lsp1109I	GCAGC	1 cut(s)	58
LweI	GCATC	1 cut(s)	834
MaeI	CTAG	2 cut(s)	434, 910
MaeII	ACGT	1 cut(s)	237
MalI	GATC	3 cut(s)	29, 474, 654
MboI	GATC	3 cut(s)	27, 472, 652
MboII	GAAGA	5 cut(s)	85, 204, 393, 613, 772
MhlI	GDGCHC	2 cut(s)	462, 662
MluCI	AATT	4 cut(s)	116, 289, 631, 900
Mly113I	GGCGCC	1 cut(s)	264
MmeI	TCCRAC	1 cut(s)	292
MnlI	CCTC	7 cut(s)	62, 214, 269, 277, 320, 379, 710
Mph1103I	ATGCAT	1 cut(s)	649
MseI	TTAA	3 cut(s)	150, 317, 465
MslI	CAYNNNNRTG	2 cut(s)	300, 665
MspA1I	CMGCKG	1 cut(s)	714
MwoI	GCNNNNNNNGC	2 cut(s)	551, 896
NarI	GGCGCC	1 cut(s)	264
NdeI	CATATG	1 cut(s)	649
NdeII	GATC	3 cut(s)	27, 472, 652
NlaIII	CATG	1 cut(s)	824
NlaIV	GGNNCC	1 cut(s)	265
NmeAIII	GCCGAG	1 cut(s)	240
NsiI	ATGCAT	1 cut(s)	649
OliI	CACNNNNGTG	1 cut(s)	665
PfeI	GAWTC	2 cut(s)	377, 848
PflFI	GACNNNGTC	1 cut(s)	335
PflMI	CCANNNNNTGG	1 cut(s)	589
PkrI	GCNGC	1 cut(s)	73
PluTI	GGCGCC	1 cut(s)	267
PspN4I	GGNNCC	1 cut(s)	265
PsyI	GACNNNGTC	1 cut(s)	335
RsaI	GTAC	1 cut(s)	428
RsaNI	GTAC	1 cut(s)	427
RseI	CAYNNNNRTG	2 cut(s)	300, 665
SaqAI	TTAA	3 cut(s)	150, 317, 465
SatI	GCNGC	1 cut(s)	72
Sau3AI	GATC	3 cut(s)	27, 472, 652
SduI	GDGCHC	2 cut(s)	462, 662
SfaNI	GCATC	1 cut(s)	834
SfcI	CTRYAG	1 cut(s)	709
SfoI	GGCGCC	1 cut(s)	265
SmiMI	CAYNNNNRTG	2 cut(s)	300, 665
SmlI	CTYRAG	3 cut(s)	270, 518, 800
SmoI	CTYRAG	3 cut(s)	270, 518, 800
Sse9I	AATT	4 cut(s)	116, 289, 631, 900
SsiI	CCGC	1 cut(s)	714
SspDI	GGCGCC	1 cut(s)	263
SspMI	CTAG	2 cut(s)	434, 910
TaaI	ACNGT	2 cut(s)	335, 667
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	1 cut(s)	450
TasI	AATT	4 cut(s)	116, 289, 631, 900
TatI	WGTACW	1 cut(s)	426
TfiI	GAWTC	2 cut(s)	377, 848
Tru1I	TTAA	3 cut(s)	150, 317, 465
Tru9I	TTAA	3 cut(s)	150, 317, 465
TscAI	CASTG	4 cut(s)	256, 340, 670, 790
TseI	GCWGC	1 cut(s)	71
TspDTI	ATGAA	4 cut(s)	31, 667, 809, 888
TspRI	CASTG	4 cut(s)	256, 340, 670, 790
Tth111I	GACNNNGTC	1 cut(s)	335
Van91I	CCANNNNNTGG	1 cut(s)	589
XagI	CCTNNNNNAGG	1 cut(s)	793
XapI	RAATTY	3 cut(s)	116, 289, 631
XbaI	TCTAGA	1 cut(s)	433
XspI	CTAG	2 cut(s)	434, 910
Zsp2I	ATGCAT	1 cut(s)	649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.