Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0001934

Physical Location & Seq

Genomic Coordinates Reverse (-)

3994295 .. 3995208

Gene Structure 914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G004680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGCAGTTCCAAAGCTGAAGCTTATGATCAGCCTTGTATTCATTCAAGCCCTCATCACTTCAATCCAAGCTGCCCCATCAAAGTCAGTTATATTCAGAGAATACATAGGAGCTGAATTCAAGAGTGTCAAGTTTTCCGATGTCCCCATTAACCAAAATGTTGTGTTCCACTTCCTTCTCTCCTTTGCCATCGACTATGACACATCAGGTTCTTCACCCACCAATGGAAAATTCAACGTCTTTTGGGACACGGACAACCTCGGCGCCTCTCAAGTTTCAGACATCAAGAATGCACATTCAAATTGTCAAAGTGCCTCTGCTTACTTTAACCCTTCCTCAGTTGATTCATGGGTTTCTAATGCTGTTTCTTCACTCACAAGTATCATCCAGCAGTACAATCTAGATGGGCTTGACATTGATTACGAGCACTTTAAATCTGATCCCAACACCTTTTCCGAGTGCATTGGAAGGCTTATAAAAACCCTCAAGGACAATGGTGTGATCAAGTTTGCTTCCATTGCTCCTTTTGATGACGATGACGTTCAGAGCCACTACTTGGCCTTGTGGAAGAACTACGGTCAGTTGATAGACTATGTGAACTTCCAGTTCTATGCATATGATCAGAGCACCACTGTGACTCAGTTCATCAATTATTTCAAGAAGCAAAGCTCAAATTACAATGGTGGGAAGGTCTTAGCGAGCTTTAGCACCGATGGGATGAGTGGTGGATTGTCCCCTGAAAATGGGTTCTTCACTGCCTGCCATATGCTCAAGAGTGAACAAAACCTTCATGGTATCTTTGTTTGGTCTGCTGATGATTCCAAGAAAAATGGTTTCCACTATGAAGAGCAATCCCAAGCTCTTTTGGCAACTCCACACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

293

Amino Acids

32.66

Weight (kDa)

5.26

Isoelectric Point (pI)

34.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_18	PF00704	108 - 209	6.3e-07	Glycosyl hydrolases family 18
TIM-barrel_EndoS	PF23916	118 - 222	4.1e-07	Endo-beta-N-acetylglucosaminidase EndoS TIM-barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001934)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34450 FvH4_6g05690 FvH4_6g27980
malus_domestica	MD03G1105600.v1.1 MD11G1118100.v1.1
prunus_persica	Prupe.4G164000_v2.0.a1 Prupe.6G088400_v2.0.a1
pyrus_communis	pycom11g07790 pycom11g09900
rosa_chinensis	RchiOBHm_Chr3g0454591 RchiOBHm_Chr5g0062101 RchiOBHm_Chr5g0062131 RchiOBHm_Chr5g0062171
rosa_laevigata	RLG00000025431 RLG00000035531 RLG00000035534 RLG00000035538
rosa_multiflora	Rmu_sc0001792.1_g000040 Rmu_sc0002296.1_g000014 Rmu_sc0002296.1_g000017 Rmu_sc0002296.1_g000019 Rmu_sc0009685.1_g000002 Rmu_sc0009685.1_g000009
rosa_roxburghii	Rroxscaffold_1G00018540 Rroxscaffold_1G00018570 Rroxscaffold_1G00018600 Rroxscaffold_1G00018620 Rroxscaffold_6G00424950
rosa_rugosa	Rorug03G0000400 Rorug05G0346000 Rorug05G0346200
rosa_samantha	Rh3AG060200 Rh3BG062300 Rh3CG061100 Rh3DG061900 Rh5BG420900 Rh5BG421100 Rh5CG444900 Rh5CG445200 Rh5DG436000 Rh5DG436100 Rh5DG436200
rosa_wichuraiana	Rw3G004680 Rw5G038380 Rw5G038390 Rw5G038400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	476
AccB1I	GGYRCC	1 cut(s)	263
AccB7I	CCANNNNNTGG	1 cut(s)	556
AclWI	GGATC	1 cut(s)	434
AcsI	RAATTY	2 cut(s)	116, 230
AcuI	CTGAAG	1 cut(s)	38
AcyI	GRCGYC	1 cut(s)	264
AfaI	GTAC	1 cut(s)	395
AfiI	CCNNNNNNNGG	3 cut(s)	224, 556, 743
AgsI	TTSAA	6 cut(s)	47, 63, 121, 235, 300, 658
AjuI	GAANNNNNNNTTGG	2 cut(s)	215, 247
AleI	CACNNNNGTG	1 cut(s)	632
AluBI	AGCT	7 cut(s)	16, 22, 71, 113, 669, 702, 860
AluI	AGCT	7 cut(s)	16, 22, 71, 113, 669, 702, 860
Alw21I	GWGCWC	2 cut(s)	429, 629
AlwI	GGATC	1 cut(s)	434
AoxI	GGCC	1 cut(s)	558
ApeKI	GCWGC	1 cut(s)	71
ApoI	RAATTY	2 cut(s)	116, 230
AspLEI	GCGC	1 cut(s)	266
AsuHPI	GGTGA	1 cut(s)	207
BanI	GGYRCC	1 cut(s)	263
Bbv12I	GWGCWC	2 cut(s)	429, 629
BbvI	GCAGC	1 cut(s)	58
BccI	CCATC	4 cut(s)	85, 197, 398, 707
BclI	TGATCA	3 cut(s)	27, 501, 619
BfaI	CTAG	2 cut(s)	401, 880
BfoI	RGCGCY	1 cut(s)	267
BisI	GCNGC	1 cut(s)	72
BlsI	GCNGC	1 cut(s)	73
BmiI	GGNNCC	1 cut(s)	265
BpuEI	CTTGAG	3 cut(s)	255, 470, 755
BsaHI	GRCGYC	1 cut(s)	264
BsaJI	CCNNGG	1 cut(s)	259
Bsc4I	CCNNNNNNNGG	3 cut(s)	224, 556, 743
Bse1I	ACTGG	1 cut(s)	604
Bse3DI	GCAATG	1 cut(s)	516
BseDI	CCNNGG	1 cut(s)	259
BseGI	GGATG	2 cut(s)	384, 723
BseLI	CCNNNNNNNGG	3 cut(s)	224, 556, 743
BseMI	GCAATG	1 cut(s)	516
BseMII	CTCAG	2 cut(s)	351, 653
BseNI	ACTGG	1 cut(s)	604
BseXI	GCAGC	1 cut(s)	58
BshFI	GGCC	1 cut(s)	560
BshNI	GGYRCC	1 cut(s)	263
BsiHKAI	GWGCWC	2 cut(s)	429, 629
BslFI	GGGAC	3 cut(s)	128, 260, 718
BslI	CCNNNNNNNGG	3 cut(s)	224, 556, 743
BsmFI	GGGAC	3 cut(s)	128, 260, 718
BsmI	GAATGC	1 cut(s)	295
BsnI	GGCC	1 cut(s)	560
Bsp1286I	GDGCHC	2 cut(s)	429, 629
Bsp143I	GATC	4 cut(s)	27, 439, 501, 619
BspANI	GGCC	1 cut(s)	560
BspCNI	CTCAG	2 cut(s)	350, 652
BspLI	GGNNCC	1 cut(s)	265
BspPI	GGATC	1 cut(s)	434
BspQI	GCTCTTC	1 cut(s)	840
BspT107I	GGYRCC	1 cut(s)	263
BsrDI	GCAATG	1 cut(s)	516
BsrI	ACTGG	1 cut(s)	604
BssECI	CCNNGG	1 cut(s)	259
BssMI	GATC	4 cut(s)	27, 439, 501, 619
BssNI	GRCGYC	1 cut(s)	264
Bst4CI	ACNGT	2 cut(s)	578, 634
Bst6I	CTCTTC	1 cut(s)	840
BstACI	GRCGYC	1 cut(s)	264
BstC8I	GCNNGC	2 cut(s)	700, 760
BstDEI	CTNAG	3 cut(s)	337, 639, 694
BstF5I	GGATG	2 cut(s)	384, 723
BstH2I	RGCGCY	1 cut(s)	267
BstHHI	GCGC	1 cut(s)	266
BstKTI	GATC	4 cut(s)	30, 442, 504, 622
BstMBI	GATC	4 cut(s)	27, 439, 501, 619
BstMWI	GCNNNNNNNGC	2 cut(s)	518, 866
BstV1I	GCAGC	1 cut(s)	58
BsuRI	GGCC	1 cut(s)	560
BtsCI	GGATG	2 cut(s)	384, 723
BtsI	GCAGTG	1 cut(s)	753
BtsIMutI	CAGTG	2 cut(s)	630, 753
Cac8I	GCNNGC	2 cut(s)	700, 760
CfoI	GCGC	1 cut(s)	266
Csp6I	GTAC	1 cut(s)	394
CviAII	CATG	2 cut(s)	348, 791
CviQI	GTAC	1 cut(s)	394
DdeI	CTNAG	3 cut(s)	337, 639, 694
DinI	GGCGCC	1 cut(s)	265
DpnI	GATC	4 cut(s)	29, 441, 503, 621
DpnII	GATC	4 cut(s)	27, 439, 501, 619
DraI	TTTAAA	1 cut(s)	433
Eam1104I	CTCTTC	1 cut(s)	840
EarI	CTCTTC	1 cut(s)	840
Eco57I	CTGAAG	1 cut(s)	38
EcoRI	GAATTC	1 cut(s)	116
EcoT22I	ATGCAT	1 cut(s)	616
EgeI	GGCGCC	1 cut(s)	265
EheI	GGCGCC	1 cut(s)	265
FaeI	CATG	2 cut(s)	351, 794
FaqI	GGGAC	3 cut(s)	128, 260, 718
FatI	CATG	2 cut(s)	347, 790
FauNDI	CATATG	2 cut(s)	616, 765
FbaI	TGATCA	3 cut(s)	27, 501, 619
Fnu4HI	GCNGC	1 cut(s)	72
FokI	GGATG	2 cut(s)	371, 730
Fsp4HI	GCNGC	1 cut(s)	72
FspBI	CTAG	2 cut(s)	401, 880
GlaI	GCGC	1 cut(s)	265
GluI	GCNGC	1 cut(s)	72
HaeII	RGCGCY	1 cut(s)	267
HaeIII	GGCC	1 cut(s)	560
HhaI	GCGC	1 cut(s)	266
Hin1I	GRCGYC	1 cut(s)	264
Hin1II	CATG	2 cut(s)	351, 794
Hin6I	GCGC	1 cut(s)	264
HinP1I	GCGC	1 cut(s)	264
HindIII	AAGCTT	1 cut(s)	20
HinfI	GANTC	3 cut(s)	344, 637, 818
HphI	GGTGA	1 cut(s)	207
Hpy166II	GTNNAC	2 cut(s)	598, 779
Hpy188I	TCNGA	7 cut(s)	98, 139, 280, 439, 457, 546, 624
Hpy188III	TCNNGA	5 cut(s)	121, 286, 401, 658, 772
Hpy8I	GTNNAC	2 cut(s)	598, 779
HpyAV	CCTTC	5 cut(s)	185, 342, 462, 682, 797
HpyCH4III	ACNGT	2 cut(s)	578, 634
HpyCH4IV	ACGT	2 cut(s)	237, 540
HpyCH4V	TGCA	3 cut(s)	293, 462, 614
HpyF10VI	GCNNNNNNNGC	2 cut(s)	518, 866
HpyF3I	CTNAG	3 cut(s)	337, 639, 694
HpySE526I	ACGT	2 cut(s)	237, 540
Hsp92I	GRCGYC	1 cut(s)	264
Hsp92II	CATG	2 cut(s)	351, 794
HspAI	GCGC	1 cut(s)	264
KasI	GGCGCC	1 cut(s)	263
Ksp22I	TGATCA	3 cut(s)	27, 501, 619
Kzo9I	GATC	4 cut(s)	27, 439, 501, 619
LguI	GCTCTTC	1 cut(s)	840
LmnI	GCTCC	2 cut(s)	110, 526
LpnPI	CCDG	5 cut(s)	192, 401, 617, 750, 772
Lsp1109I	GCAGC	1 cut(s)	58
MaeI	CTAG	2 cut(s)	401, 880
MaeII	ACGT	2 cut(s)	237, 540
MaeIII	GTNAC	1 cut(s)	634
MalI	GATC	4 cut(s)	29, 441, 503, 621
MboI	GATC	4 cut(s)	27, 439, 501, 619
MboII	GAAGA	5 cut(s)	204, 360, 580, 742, 857
MhlI	GDGCHC	2 cut(s)	429, 629
MluCI	AATT	5 cut(s)	116, 230, 301, 649, 673
Mly113I	GGCGCC	1 cut(s)	264
MlyI	GAGTC	1 cut(s)	631
MnlI	CCTC	6 cut(s)	62, 269, 277, 325, 346, 494
Mph1103I	ATGCAT	1 cut(s)	616
MseI	TTAA	3 cut(s)	150, 327, 432
MslI	CAYNNNNRTG	1 cut(s)	632
Mva1269I	GAATGC	1 cut(s)	295
MwoI	GCNNNNNNNGC	2 cut(s)	518, 866
NarI	GGCGCC	1 cut(s)	264
NdeI	CATATG	2 cut(s)	616, 765
NdeII	GATC	4 cut(s)	27, 439, 501, 619
NlaIII	CATG	2 cut(s)	351, 794
NlaIV	GGNNCC	1 cut(s)	265
NmeAIII	GCCGAG	1 cut(s)	240
NmuCI	GTSAC	1 cut(s)	634
NsiI	ATGCAT	1 cut(s)	616
OliI	CACNNNNGTG	1 cut(s)	632
PciSI	GCTCTTC	1 cut(s)	840
PctI	GAATGC	1 cut(s)	295
PfeI	GAWTC	2 cut(s)	344, 818
PflMI	CCANNNNNTGG	1 cut(s)	556
PkrI	GCNGC	1 cut(s)	73
PleI	GAGTC	1 cut(s)	631
PluTI	GGCGCC	1 cut(s)	267
PpsI	GAGTC	1 cut(s)	631
PsiI	TTATAA	1 cut(s)	476
PspN4I	GGNNCC	1 cut(s)	265
RsaI	GTAC	1 cut(s)	395
RsaNI	GTAC	1 cut(s)	394
RseI	CAYNNNNRTG	1 cut(s)	632
SapI	GCTCTTC	1 cut(s)	840
SaqAI	TTAA	3 cut(s)	150, 327, 432
SatI	GCNGC	1 cut(s)	72
Sau3AI	GATC	4 cut(s)	27, 439, 501, 619
SchI	GAGTC	1 cut(s)	631
SduI	GDGCHC	2 cut(s)	429, 629
SfoI	GGCGCC	1 cut(s)	265
SmiMI	CAYNNNNRTG	1 cut(s)	632
SmlI	CTYRAG	3 cut(s)	270, 485, 770
SmoI	CTYRAG	3 cut(s)	270, 485, 770
Sse9I	AATT	5 cut(s)	116, 230, 301, 649, 673
SspDI	GGCGCC	1 cut(s)	263
SspMI	CTAG	2 cut(s)	401, 880
TaaI	ACNGT	2 cut(s)	578, 634
TaiI	ACGT	2 cut(s)	240, 543
TaqI	TCGA	1 cut(s)	192
TasI	AATT	5 cut(s)	116, 230, 301, 649, 673
TatI	WGTACW	1 cut(s)	393
TfiI	GAWTC	2 cut(s)	344, 818
Tru1I	TTAA	3 cut(s)	150, 327, 432
Tru9I	TTAA	3 cut(s)	150, 327, 432
TscAI	CASTG	2 cut(s)	637, 760
TseFI	GTSAC	1 cut(s)	634
TseI	GCWGC	1 cut(s)	71
Tsp45I	GTSAC	1 cut(s)	634
TspDTI	ATGAA	5 cut(s)	31, 336, 634, 779, 858
TspGWI	ACGGA	1 cut(s)	266
TspRI	CASTG	2 cut(s)	637, 760
Van91I	CCANNNNNTGG	1 cut(s)	556
XapI	RAATTY	2 cut(s)	116, 230
XbaI	TCTAGA	1 cut(s)	400
XspI	CTAG	2 cut(s)	401, 880
Zsp2I	ATGCAT	1 cut(s)	616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.