Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001934

Physical Location & Seq

Genomic Coordinates Reverse (-)

9518616 .. 9520585

Gene Structure 1970 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G164000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGCACTCCCAAAGCTTAAGCTCATCTTCACCCTTTTCTTCCTTCAAACCCTCCTCACATCCCCTACATCAATCCGAGCAGCCCCAGCAAACTCAGATCTCTTCAGAGAATACATAGGAGCTCAATTCAAGAATGTCAAGTTTTCTGATGTCCCCATTAACCCAAATGTTGAATTCCACTTCATTCTCTCATTTGCCATAGACTATGACACCTCCTCCTCTCCCACCAATGGAAAATTCAATGTCTTCTGGGACTCTGATAATCTTAGCCCGTCCCAAGTTTCCTCCATAAAAAATCAGCATTCAAATGTCAAAGTGGCCTTTAGCCTAGGAGGAGACTCTGTGAATGGTGTCCCTGCTGAATTCAAGCCTTCCTCAATTGACTCATGGGTTTCCAATGCTGTTTCTTCTCTCACAGGCATCATCCAGCAGTACAATTTGGATGGAATTGACATTGATTACGAGCACTTCAGCGCAGACCCTGCTACCTTCTCCGAGTGCATTGGGAAGCTTATAACAACCCTCAAGAACAATGGAGTGATATCATTTGCTTCCATTGCTCCCTTTGATGATGACCAAGTTCAGAGCCACTACTTGGCCTTGTGGAAGAGCTATGGCCACTTGATAGACTATGTGAATTTCCAGTTTTACGCATACGATCAGGGAACCACAGTGTCTCAGTTCATCAATTACTTCAAGACACAAAGCTCCAATTACAATGGTGGGAAGGTCTTGGCAAGCTTTATCAGTGATGGGAGTCGTGGACTGTCCCCTGAGAATGGTTTTTTCACTGCCTGTGACACGCTCAAGAGTGAGCAACAACTTCATGGTATATTTGTTTGGTCTGCAGATGATTCCAAGGCAATTGGTTTCCGCTATGAAGAGCAATCACAAAATTTCTTAGCAACCCCCCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

306

Amino Acids

33.84

Weight (kDa)

4.94

Isoelectric Point (pI)

36.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001934)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34450 FvH4_6g05690 FvH4_6g27980
malus_domestica	MD03G1105600.v1.1 MD11G1118100.v1.1
prunus_persica	Prupe.4G164000_v2.0.a1 Prupe.6G088400_v2.0.a1
pyrus_communis	pycom11g07790 pycom11g09900
rosa_chinensis	RchiOBHm_Chr3g0454591 RchiOBHm_Chr5g0062101 RchiOBHm_Chr5g0062131 RchiOBHm_Chr5g0062171
rosa_laevigata	RLG00000025431 RLG00000035531 RLG00000035534 RLG00000035538
rosa_multiflora	Rmu_sc0001792.1_g000040 Rmu_sc0002296.1_g000014 Rmu_sc0002296.1_g000017 Rmu_sc0002296.1_g000019 Rmu_sc0009685.1_g000002 Rmu_sc0009685.1_g000009
rosa_roxburghii	Rroxscaffold_1G00018540 Rroxscaffold_1G00018570 Rroxscaffold_1G00018600 Rroxscaffold_1G00018620 Rroxscaffold_6G00424950
rosa_rugosa	Rorug03G0000400 Rorug05G0346000 Rorug05G0346200
rosa_samantha	Rh3AG060200 Rh3BG062300 Rh3CG061100 Rh3DG061900 Rh5BG420900 Rh5BG421100 Rh5CG444900 Rh5CG445200 Rh5DG436000 Rh5DG436100 Rh5DG436200
rosa_wichuraiana	Rw3G004680 Rw5G038380 Rw5G038390 Rw5G038400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	515
AccB7I	CCANNNNNTGG	1 cut(s)	595
AciI	CCGC	1 cut(s)	874
AcoI	YGGCCR	1 cut(s)	616
AcsI	RAATTY	5 cut(s)	173, 236, 362, 637, 895
AcuI	CTGAAG	2 cut(s)	88, 454
AfaI	GTAC	1 cut(s)	434
AfiI	CCNNNNNNNGG	3 cut(s)	230, 595, 779
AflII	CTTAAG	1 cut(s)	17
AgsI	TTSAA	7 cut(s)	47, 130, 173, 241, 306, 367, 697
AjuI	GAANNNNNNNTTGG	2 cut(s)	221, 253
AluBI	AGCT	7 cut(s)	16, 22, 122, 511, 612, 708, 741
AluI	AGCT	7 cut(s)	16, 22, 122, 511, 612, 708, 741
Alw21I	GWGCWC	2 cut(s)	124, 468
Alw26I	GTCTC	2 cut(s)	330, 681
AlwNI	CAGNNNCTG	1 cut(s)	482
AoxI	GGCC	3 cut(s)	318, 597, 616
ApeKI	GCWGC	1 cut(s)	80
ApoI	RAATTY	5 cut(s)	173, 236, 362, 637, 895
AspA2I	CCTAGG	1 cut(s)	328
AspLEI	GCGC	1 cut(s)	476
AsuHPI	GGTGA	1 cut(s)	22
AvrII	CCTAGG	1 cut(s)	328
BalI	TGGCCA	1 cut(s)	618
BanII	GRGCYC	1 cut(s)	124
BbsI	GAAGAC	1 cut(s)	238
Bbv12I	GWGCWC	2 cut(s)	124, 468
BbvI	GCAGC	1 cut(s)	92
BccI	CCATC	2 cut(s)	437, 746
BcoDI	GTCTC	2 cut(s)	330, 681
BfaI	CTAG	2 cut(s)	329, 916
BfmI	CTRYAG	1 cut(s)	846
BfrI	CTTAAG	1 cut(s)	17
BglII	AGATCT	1 cut(s)	97
BisI	GCNGC	1 cut(s)	81
BlnI	CCTAGG	1 cut(s)	328
BlsI	GCNGC	1 cut(s)	82
BmiI	GGNNCC	1 cut(s)	667
BmsI	GCATC	1 cut(s)	429
BpiI	GAAGAC	1 cut(s)	238
BpuEI	CTTGAG	2 cut(s)	509, 791
BsaJI	CCNNGG	2 cut(s)	328, 858
BsaXI	ACNNNNNCTCC	4 cut(s)	200, 230, 327, 357
Bsc4I	CCNNNNNNNGG	3 cut(s)	230, 595, 779
Bse1I	ACTGG	1 cut(s)	643
Bse3DI	GCAATG	1 cut(s)	555
BseDI	CCNNGG	2 cut(s)	328, 858
BseGI	GGATG	3 cut(s)	59, 423, 448
BseLI	CCNNNNNNNGG	3 cut(s)	230, 595, 779
BseMI	GCAATG	1 cut(s)	555
BseMII	CTCAG	3 cut(s)	108, 692, 765
BseNI	ACTGG	1 cut(s)	643
BseRI	GAGGAG	4 cut(s)	44, 205, 208, 348
BseXI	GCAGC	1 cut(s)	92
BseYI	CCCAGC	1 cut(s)	85
BshFI	GGCC	3 cut(s)	320, 599, 618
BsiHKAI	GWGCWC	2 cut(s)	124, 468
BslFI	GGGAC	5 cut(s)	137, 259, 266, 338, 754
BslI	CCNNNNNNNGG	3 cut(s)	230, 595, 779
BsmAI	GTCTC	2 cut(s)	330, 681
BsmFI	GGGAC	5 cut(s)	137, 259, 266, 338, 754
BsmI	GAATGC	1 cut(s)	301
BsnI	GGCC	3 cut(s)	320, 599, 618
Bsp1286I	GDGCHC	2 cut(s)	124, 468
Bsp143I	GATC	2 cut(s)	97, 658
BspACI	CCGC	1 cut(s)	874
BspANI	GGCC	3 cut(s)	320, 599, 618
BspCNI	CTCAG	3 cut(s)	107, 691, 766
BspLI	GGNNCC	1 cut(s)	667
BspMAI	CTGCAG	1 cut(s)	850
BspQI	GCTCTTC	2 cut(s)	602, 876
BspTI	CTTAAG	1 cut(s)	17
BsrDI	GCAATG	1 cut(s)	555
BsrI	ACTGG	1 cut(s)	643
BssECI	CCNNGG	2 cut(s)	328, 858
BssMI	GATC	2 cut(s)	97, 658
BssT1I	CCWWGG	2 cut(s)	328, 858
Bst4CI	ACNGT	2 cut(s)	673, 768
Bst6I	CTCTTC	3 cut(s)	107, 602, 876
BstAFI	CTTAAG	1 cut(s)	17
BstAPI	GCANNNNNTGC	1 cut(s)	482
BstC8I	GCNNGC	1 cut(s)	739
BstDEI	CTNAG	5 cut(s)	94, 266, 678, 774, 901
BstF5I	GGATG	3 cut(s)	59, 423, 448
BstHHI	GCGC	1 cut(s)	476
BstKTI	GATC	2 cut(s)	100, 661
BstMAI	GTCTC	2 cut(s)	330, 681
BstMBI	GATC	2 cut(s)	97, 658
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 482, 557
BstSFI	CTRYAG	1 cut(s)	846
BstV1I	GCAGC	1 cut(s)	92
BstV2I	GAAGAC	1 cut(s)	238
BstX2I	RGATCY	1 cut(s)	97
BstYI	RGATCY	1 cut(s)	97
BsuRI	GGCC	3 cut(s)	320, 599, 618
BtsCI	GGATG	3 cut(s)	59, 423, 448
BtsI	GCAGTG	1 cut(s)	789
BtsIMutI	CAGTG	3 cut(s)	678, 754, 789
Cac8I	GCNNGC	1 cut(s)	739
CaiI	CAGNNNCTG	1 cut(s)	482
CfoI	GCGC	1 cut(s)	476
Csp6I	GTAC	1 cut(s)	433
CviAII	CATG	2 cut(s)	387, 827
CviQI	GTAC	1 cut(s)	433
DdeI	CTNAG	5 cut(s)	94, 266, 678, 774, 901
DpnI	GATC	2 cut(s)	99, 660
DpnII	GATC	2 cut(s)	97, 658
EaeI	YGGCCR	1 cut(s)	616
Eam1104I	CTCTTC	3 cut(s)	107, 602, 876
EarI	CTCTTC	3 cut(s)	107, 602, 876
Ecl136II	GAGCTC	1 cut(s)	122
Eco130I	CCWWGG	2 cut(s)	328, 858
Eco24I	GRGCYC	1 cut(s)	124
Eco32I	GATATC	1 cut(s)	543
Eco53kI	GAGCTC	1 cut(s)	122
Eco57I	CTGAAG	2 cut(s)	88, 454
EcoICRI	GAGCTC	1 cut(s)	122
EcoRI	GAATTC	2 cut(s)	173, 362
EcoRV	GATATC	1 cut(s)	543
EcoT14I	CCWWGG	2 cut(s)	328, 858
EcoT38I	GRGCYC	1 cut(s)	124
ErhI	CCWWGG	2 cut(s)	328, 858
FaeI	CATG	2 cut(s)	390, 830
FalI	AAGNNNNNCTT	2 cut(s)	11, 43
FaqI	GGGAC	5 cut(s)	137, 259, 266, 338, 754
FatI	CATG	2 cut(s)	386, 826
Fnu4HI	GCNGC	1 cut(s)	81
FokI	GGATG	3 cut(s)	46, 410, 455
FriOI	GRGCYC	1 cut(s)	124
Fsp4HI	GCNGC	1 cut(s)	81
FspBI	CTAG	2 cut(s)	329, 916
GlaI	GCGC	1 cut(s)	475
GluI	GCNGC	1 cut(s)	81
GsaI	CCCAGC	1 cut(s)	89
HaeIII	GGCC	3 cut(s)	320, 599, 618
HhaI	GCGC	1 cut(s)	476
Hin1II	CATG	2 cut(s)	390, 830
Hin6I	GCGC	1 cut(s)	474
HinP1I	GCGC	1 cut(s)	474
HindIII	AAGCTT	3 cut(s)	14, 509, 739
HinfI	GANTC	5 cut(s)	254, 338, 383, 757, 854
HphI	GGTGA	1 cut(s)	22
Hpy166II	GTNNAC	1 cut(s)	764
Hpy188I	TCNGA	7 cut(s)	77, 97, 107, 148, 259, 496, 585
Hpy188III	TCNNGA	4 cut(s)	130, 526, 697, 808
Hpy8I	GTNNAC	1 cut(s)	764
HpyAV	CCTTC	4 cut(s)	53, 381, 499, 721
HpyCH4III	ACNGT	2 cut(s)	673, 768
HpyCH4V	TGCA	2 cut(s)	501, 848
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 482, 557
HpyF3I	CTNAG	5 cut(s)	94, 266, 678, 774, 901
Hsp92II	CATG	2 cut(s)	390, 830
HspAI	GCGC	1 cut(s)	474
Kzo9I	GATC	2 cut(s)	97, 658
LguI	GCTCTTC	2 cut(s)	602, 876
LmnI	GCTCC	3 cut(s)	119, 565, 713
Lsp1109I	GCAGC	1 cut(s)	92
LweI	GCATC	1 cut(s)	429
MaeI	CTAG	2 cut(s)	329, 916
MaeIII	GTNAC	1 cut(s)	797
MalI	GATC	2 cut(s)	99, 660
MboI	GATC	2 cut(s)	97, 658
MboII	GAAGA	7 cut(s)	19, 31, 94, 238, 399, 619, 893
MfeI	CAATTG	2 cut(s)	378, 864
MflI	RGATCY	1 cut(s)	97
MhlI	GDGCHC	2 cut(s)	124, 468
MlsI	TGGCCA	1 cut(s)	618
MluNI	TGGCCA	1 cut(s)	618
MlyI	GAGTC	4 cut(s)	248, 332, 377, 766
MnlI	CCTC	9 cut(s)	62, 65, 223, 226, 229, 295, 326, 385, 533
Mox20I	TGGCCA	1 cut(s)	618
MscI	TGGCCA	1 cut(s)	618
MseI	TTAA	2 cut(s)	18, 159
MslI	CAYNNNNRTG	1 cut(s)	306
Msp20I	TGGCCA	1 cut(s)	618
MspCI	CTTAAG	1 cut(s)	17
MunI	CAATTG	2 cut(s)	378, 864
Mva1269I	GAATGC	1 cut(s)	301
MwoI	GCNNNNNNNGC	3 cut(s)	86, 482, 557
NdeII	GATC	2 cut(s)	97, 658
NlaIII	CATG	2 cut(s)	390, 830
NlaIV	GGNNCC	1 cut(s)	667
NmuCI	GTSAC	1 cut(s)	797
PciSI	GCTCTTC	2 cut(s)	602, 876
PctI	GAATGC	1 cut(s)	301
PfeI	GAWTC	1 cut(s)	854
PflMI	CCANNNNNTGG	1 cut(s)	595
PkrI	GCNGC	1 cut(s)	82
PleI	GAGTC	4 cut(s)	248, 332, 377, 765
PpsI	GAGTC	4 cut(s)	248, 332, 377, 765
PsiI	TTATAA	1 cut(s)	515
Psp124BI	GAGCTC	1 cut(s)	124
PspFI	CCCAGC	1 cut(s)	85
PspN4I	GGNNCC	1 cut(s)	667
PstI	CTGCAG	1 cut(s)	850
PstNI	CAGNNNCTG	1 cut(s)	482
PsuI	RGATCY	1 cut(s)	97
RsaI	GTAC	1 cut(s)	434
RsaNI	GTAC	1 cut(s)	433
RseI	CAYNNNNRTG	1 cut(s)	306
SacI	GAGCTC	1 cut(s)	124
SapI	GCTCTTC	2 cut(s)	602, 876
SaqAI	TTAA	2 cut(s)	18, 159
SatI	GCNGC	1 cut(s)	81
Sau3AI	GATC	2 cut(s)	97, 658
SchI	GAGTC	4 cut(s)	248, 332, 377, 766
SduI	GDGCHC	2 cut(s)	124, 468
SfaNI	GCATC	1 cut(s)	429
SfcI	CTRYAG	1 cut(s)	846
SmiMI	CAYNNNNRTG	1 cut(s)	306
SmlI	CTYRAG	3 cut(s)	17, 524, 806
SmoI	CTYRAG	3 cut(s)	17, 524, 806
SsiI	CCGC	1 cut(s)	874
SspMI	CTAG	2 cut(s)	329, 916
SstI	GAGCTC	1 cut(s)	124
StyI	CCWWGG	2 cut(s)	328, 858
TaaI	ACNGT	2 cut(s)	673, 768
TatI	WGTACW	1 cut(s)	432
TfiI	GAWTC	1 cut(s)	854
Tru1I	TTAA	2 cut(s)	18, 159
Tru9I	TTAA	2 cut(s)	18, 159
TscAI	CASTG	3 cut(s)	678, 754, 796
TseFI	GTSAC	1 cut(s)	797
TseI	GCWGC	1 cut(s)	80
Tsp45I	GTSAC	1 cut(s)	797
TspDTI	ATGAA	4 cut(s)	172, 673, 815, 894
TspRI	CASTG	3 cut(s)	678, 754, 796
Van91I	CCANNNNNTGG	1 cut(s)	595
Vha464I	CTTAAG	1 cut(s)	17
XapI	RAATTY	5 cut(s)	173, 236, 362, 637, 895
XmaJI	CCTAGG	1 cut(s)	328
XspI	CTAG	2 cut(s)	329, 916

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.