Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0001934

Physical Location & Seq

Genomic Coordinates Forward (+)

5937198 .. 5938109

Gene Structure 912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g07790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGCAGTTCCAATGCTTAAGCTCGTCATCACTCTTTTCTTTCTGCAAGCCCTCCTCACATCCCATATCCAAGCCGGCCCGGGAAACTCCGATCTCTTTCGCGAATACATAGGAGCCGAATTCAATAACGTCAAGTTTTCGGATGTCCCCATAAACCCTAATGTAGAATTCCACTTCATTCTCTCCTTCGCCATAGACTATGACCCCTCAGGCTCCTCTCCCACCAACGGAAAATTCAATGTCTTTTGGGACTCCGACAACCTCAGCCCTTCCCAAGTTTCCTCCATCAAAAACCAACATTCTAATGTCAAAGTTGCCTTGAGCTTAGGAGGAGATAGTGTCAATAGTGGCTCTGCCTACTTCAACCCTTCCTCGATTGATTCGTGGGTTTCGAATGCTGTTTCTTCACTCACAAGCATCATCCAGCAGTACAACTTGGACGGAATTGACATTGATTACGAGCACTTTCAAGCAGACCCCGATACATTTTCCGAGTGCATTGGAAGGCTTATAACAACCCTAAAGAACAATGGAGTGATCTCATTTGCTTCTATTGCTCCGTTTGACGACGATGAAGTTCAGAGCCACTACTTGGCCTTGTGGAAGAGCTATGGCCATTTGATTGACTATGTCAATTTCCAATTTTATGCCTACGATCAGAGCACCACGGTGTCTCAGTTCATCAACTATTTCAACACTCAGAGCTCCAATTACAATGGCGGACAGGTCTTGGCAAGCTTTATCAGTGATGGGAGTGGCGGATTGTCACCGGAGAACGGGTTTTTTAAAGCCTGCCAGAGGCTCAGGAGTGAGGGAAAACTCGGTGGAATCTTTGTTTGGTCAGCTGATGATTCCAAGAAACTTGGTTTCCGCTACGAAAAGCAATCGGAAGCTCTCTTGGCCAATAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

304

Amino Acids

33.46

Weight (kDa)

4.64

Isoelectric Point (pI)

38.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_18	PF00704	83 - 221	6.2e-14	Glycosyl hydrolases family 18
TIM-barrel_EndoS	PF23916	103 - 233	4.1e-06	Endo-beta-N-acetylglucosaminidase EndoS TIM-barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001934)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34450 FvH4_6g05690 FvH4_6g27980
malus_domestica	MD03G1105600.v1.1 MD11G1118100.v1.1
prunus_persica	Prupe.4G164000_v2.0.a1 Prupe.6G088400_v2.0.a1
pyrus_communis	pycom11g07790 pycom11g09900
rosa_chinensis	RchiOBHm_Chr3g0454591 RchiOBHm_Chr5g0062101 RchiOBHm_Chr5g0062131 RchiOBHm_Chr5g0062171
rosa_laevigata	RLG00000025431 RLG00000035531 RLG00000035534 RLG00000035538
rosa_multiflora	Rmu_sc0001792.1_g000040 Rmu_sc0002296.1_g000014 Rmu_sc0002296.1_g000017 Rmu_sc0002296.1_g000019 Rmu_sc0009685.1_g000002 Rmu_sc0009685.1_g000009
rosa_roxburghii	Rroxscaffold_1G00018540 Rroxscaffold_1G00018570 Rroxscaffold_1G00018600 Rroxscaffold_1G00018620 Rroxscaffold_6G00424950
rosa_rugosa	Rorug03G0000400 Rorug05G0346000 Rorug05G0346200
rosa_samantha	Rh3AG060200 Rh3BG062300 Rh3CG061100 Rh3DG061900 Rh5BG420900 Rh5BG421100 Rh5CG444900 Rh5CG445200 Rh5DG436000 Rh5DG436100 Rh5DG436200
rosa_wichuraiana	Rw3G004680 Rw5G038380 Rw5G038390 Rw5G038400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	512
AccB7I	CCANNNNNTGG	1 cut(s)	592
AccII	CGCG	1 cut(s)	102
AciI	CCGC	3 cut(s)	720, 759, 871
AcoI	YGGCCR	2 cut(s)	613, 900
AcsI	RAATTY	3 cut(s)	119, 167, 233
AfaI	GTAC	1 cut(s)	431
AfiI	CCNNNNNNNGG	4 cut(s)	227, 592, 776, 798
AflII	CTTAAG	1 cut(s)	17
AgsI	TTSAA	5 cut(s)	124, 238, 364, 470, 694
AjuI	GAANNNNNNNTTGG	4 cut(s)	218, 250, 820, 852
AleI	CACNNNNGTG	1 cut(s)	668
AluBI	AGCT	7 cut(s)	22, 324, 609, 705, 738, 845, 893
AluI	AGCT	7 cut(s)	22, 324, 609, 705, 738, 845, 893
Alw21I	GWGCWC	3 cut(s)	465, 665, 707
Alw26I	GTCTC	1 cut(s)	678
Ama87I	CYCGRG	1 cut(s)	79
AoxI	GGCC	4 cut(s)	76, 594, 613, 900
ApoI	RAATTY	3 cut(s)	119, 167, 233
AspS9I	GGNCC	1 cut(s)	77
AsuC2I	CCSGG	2 cut(s)	80, 81
AsuHPI	GGTGA	1 cut(s)	759
AsuII	TTCGAA	1 cut(s)	392
AvaI	CYCGRG	1 cut(s)	79
AxyI	CCTNAGG	1 cut(s)	208
BalI	TGGCCA	2 cut(s)	615, 902
BanII	GRGCYC	1 cut(s)	707
Bbv12I	GWGCWC	3 cut(s)	465, 665, 707
BbvCI	CCTCAGC	1 cut(s)	263
BccI	CCATC	2 cut(s)	293, 743
BcnI	CCSGG	2 cut(s)	80, 81
BcoDI	GTCTC	1 cut(s)	678
BfrI	CTTAAG	1 cut(s)	17
Bme1390I	CCNGG	2 cut(s)	80, 81
BmeT110I	CYCGRG	1 cut(s)	79
BmgT120I	GGNCC	1 cut(s)	77
BmiI	GGNNCC	2 cut(s)	115, 214
BmrFI	CCNGG	2 cut(s)	80, 81
BmsI	GCATC	1 cut(s)	426
Bpu10I	CCTNAGC	3 cut(s)	263, 325, 803
Bpu14I	TTCGAA	1 cut(s)	392
BpuEI	CTTGAG	1 cut(s)	340
BpuMI	CCSGG	2 cut(s)	80, 81
BsaJI	CCNNGG	2 cut(s)	79, 666
BsaWI	WCCGGW	1 cut(s)	769
BsaXI	ACNNNNNCTCC	4 cut(s)	324, 354, 764, 794
Bsc4I	CCNNNNNNNGG	4 cut(s)	227, 592, 776, 798
Bse118I	RCCGGY	1 cut(s)	74
Bse21I	CCTNAGG	1 cut(s)	208
BseDI	CCNNGG	2 cut(s)	79, 666
BseGI	GGATG	3 cut(s)	59, 148, 420
BseLI	CCNNNNNNNGG	4 cut(s)	227, 592, 776, 798
BseMII	CTCAG	5 cut(s)	222, 277, 689, 713, 817
BseRI	GAGGAG	3 cut(s)	44, 205, 345
Bsh1236I	CGCG	1 cut(s)	102
BshFI	GGCC	4 cut(s)	78, 596, 615, 902
BsiHKAI	GWGCWC	3 cut(s)	465, 665, 707
BsiHKCI	CYCGRG	1 cut(s)	79
BsiSI	CCGG	3 cut(s)	75, 80, 770
BslFI	GGGAC	2 cut(s)	131, 263
BslI	CCNNNNNNNGG	4 cut(s)	227, 592, 776, 798
BsmAI	GTCTC	1 cut(s)	678
BsmFI	GGGAC	2 cut(s)	131, 263
BsmI	GAATGC	1 cut(s)	400
BsnI	GGCC	4 cut(s)	78, 596, 615, 902
BsoBI	CYCGRG	1 cut(s)	79
Bsp119I	TTCGAA	1 cut(s)	392
Bsp1286I	GDGCHC	3 cut(s)	465, 665, 707
Bsp143I	GATC	3 cut(s)	91, 537, 655
Bsp68I	TCGCGA	1 cut(s)	102
BspACI	CCGC	3 cut(s)	720, 759, 871
BspANI	GGCC	4 cut(s)	78, 596, 615, 902
BspCNI	CTCAG	5 cut(s)	221, 276, 688, 712, 816
BspFNI	CGCG	1 cut(s)	102
BspLI	GGNNCC	2 cut(s)	115, 214
BspQI	GCTCTTC	1 cut(s)	599
BspT104I	TTCGAA	1 cut(s)	392
BspTI	CTTAAG	1 cut(s)	17
BsrFI	RCCGGY	1 cut(s)	74
BssAI	RCCGGY	1 cut(s)	74
BssECI	CCNNGG	2 cut(s)	79, 666
BssMI	GATC	3 cut(s)	91, 537, 655
Bst4CI	ACNGT	1 cut(s)	670
Bst6I	CTCTTC	1 cut(s)	599
BstAFI	CTTAAG	1 cut(s)	17
BstBI	TTCGAA	1 cut(s)	392
BstC8I	GCNNGC	4 cut(s)	48, 76, 736, 793
BstDEI	CTNAG	6 cut(s)	208, 263, 325, 675, 699, 803
BstDSI	CCRYGG	1 cut(s)	666
BstENI	CCTNNNNNAGG	1 cut(s)	796
BstF5I	GGATG	3 cut(s)	59, 148, 420
BstFNI	CGCG	1 cut(s)	102
BstKTI	GATC	3 cut(s)	94, 540, 658
BstMAI	GTCTC	1 cut(s)	678
BstMBI	GATC	3 cut(s)	91, 537, 655
BstMWI	GCNNNNNNNGC	2 cut(s)	554, 899
BstSCI	CCNGG	2 cut(s)	78, 79
BstUI	CGCG	1 cut(s)	102
Bsu36I	CCTNAGG	1 cut(s)	208
BsuRI	GGCC	4 cut(s)	78, 596, 615, 902
BtgI	CCRYGG	1 cut(s)	666
BtsCI	GGATG	3 cut(s)	59, 148, 420
BtsIMutI	CAGTG	1 cut(s)	751
BtuMI	TCGCGA	1 cut(s)	102
Cac8I	GCNNGC	4 cut(s)	48, 76, 736, 793
Cfr10I	RCCGGY	1 cut(s)	74
Cfr13I	GGNCC	1 cut(s)	77
Cfr9I	CCCGGG	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	430
CviQI	GTAC	1 cut(s)	430
DdeI	CTNAG	6 cut(s)	208, 263, 325, 675, 699, 803
DpnI	GATC	3 cut(s)	93, 539, 657
DpnII	GATC	3 cut(s)	91, 537, 655
DraI	TTTAAA	1 cut(s)	787
EaeI	YGGCCR	2 cut(s)	613, 900
Eam1104I	CTCTTC	1 cut(s)	599
EarI	CTCTTC	1 cut(s)	599
EciI	GGCGGA	2 cut(s)	735, 774
Ecl136II	GAGCTC	1 cut(s)	705
Eco24I	GRGCYC	1 cut(s)	707
Eco53kI	GAGCTC	1 cut(s)	705
Eco81I	CCTNAGG	1 cut(s)	208
Eco88I	CYCGRG	1 cut(s)	79
EcoICRI	GAGCTC	1 cut(s)	705
EcoNI	CCTNNNNNAGG	1 cut(s)	796
EcoRI	GAATTC	2 cut(s)	119, 167
EcoT38I	GRGCYC	1 cut(s)	707
FaiI	YATR	9 cut(s)	66, 110, 152, 194, 201, 512, 612, 630, 648
FaqI	GGGAC	2 cut(s)	131, 263
FokI	GGATG	3 cut(s)	46, 155, 407
FriOI	GRGCYC	1 cut(s)	707
HaeIII	GGCC	4 cut(s)	78, 596, 615, 902
HapII	CCGG	3 cut(s)	75, 80, 770
HindIII	AAGCTT	1 cut(s)	736
HinfI	GANTC	4 cut(s)	251, 380, 828, 851
HpaII	CCGG	3 cut(s)	75, 80, 770
HphI	GGTGA	1 cut(s)	759
Hpy188I	TCNGA	8 cut(s)	91, 142, 256, 493, 582, 660, 702, 889
Hpy188III	TCNNGA	2 cut(s)	101, 805
Hpy99I	CGWCG	1 cut(s)	572
HpyAV	CCTTC	4 cut(s)	196, 279, 378, 498
HpyCH4III	ACNGT	1 cut(s)	670
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	2 cut(s)	46, 498
HpyF10VI	GCNNNNNNNGC	2 cut(s)	554, 899
HpyF3I	CTNAG	6 cut(s)	208, 263, 325, 675, 699, 803
HpySE526I	ACGT	1 cut(s)	129
KroI	GCCGGC	1 cut(s)	74
KroNI	GCCGGC	1 cut(s)	76
Kzo9I	GATC	3 cut(s)	91, 537, 655
LguI	GCTCTTC	1 cut(s)	599
LmnI	GCTCC	4 cut(s)	113, 218, 562, 710
LpnPI	CCDG	9 cut(s)	88, 93, 195, 437, 710, 783, 790, 805, 809
LweI	GCATC	1 cut(s)	426
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	1 cut(s)	765
MalI	GATC	3 cut(s)	93, 539, 657
MboI	GATC	3 cut(s)	91, 537, 655
MboII	GAAGA	2 cut(s)	396, 616
MhlI	GDGCHC	3 cut(s)	465, 665, 707
MlsI	TGGCCA	2 cut(s)	615, 902
MluCI	AATT	8 cut(s)	119, 167, 233, 444, 634, 641, 709, 907
MluNI	TGGCCA	2 cut(s)	615, 902
MlyI	GAGTC	1 cut(s)	245
MmeI	TCCRAC	1 cut(s)	279
Mox20I	TGGCCA	2 cut(s)	615, 902
MroNI	GCCGGC	1 cut(s)	74
MscI	TGGCCA	2 cut(s)	615, 902
MseI	TTAA	2 cut(s)	18, 786
MslI	CAYNNNNRTG	2 cut(s)	303, 668
Msp20I	TGGCCA	2 cut(s)	615, 902
MspA1I	CMGCKG	1 cut(s)	845
MspCI	CTTAAG	1 cut(s)	17
MspI	CCGG	3 cut(s)	75, 80, 770
MspR9I	CCNGG	2 cut(s)	80, 81
Mva1269I	GAATGC	1 cut(s)	400
MvnI	CGCG	1 cut(s)	102
MwoI	GCNNNNNNNGC	2 cut(s)	554, 899
NaeI	GCCGGC	1 cut(s)	76
NciI	CCSGG	2 cut(s)	80, 81
NdeII	GATC	3 cut(s)	91, 537, 655
NgoMIV	GCCGGC	1 cut(s)	74
NlaIV	GGNNCC	2 cut(s)	115, 214
NmuCI	GTSAC	1 cut(s)	765
NruI	TCGCGA	1 cut(s)	102
NspV	TTCGAA	1 cut(s)	392
OliI	CACNNNNGTG	1 cut(s)	668
PciSI	GCTCTTC	1 cut(s)	599
PcsI	WCGNNNNNNNCGW	2 cut(s)	380, 389
PctI	GAATGC	1 cut(s)	400
PdiI	GCCGGC	1 cut(s)	76
PfeI	GAWTC	3 cut(s)	380, 828, 851
PflFI	GACNNNGTC	1 cut(s)	629
PflMI	CCANNNNNTGG	1 cut(s)	592
PleI	GAGTC	1 cut(s)	245
PpsI	GAGTC	1 cut(s)	245
PsiI	TTATAA	1 cut(s)	512
Psp124BI	GAGCTC	1 cut(s)	707
PspN4I	GGNNCC	2 cut(s)	115, 214
PspPI	GGNCC	1 cut(s)	77
PsyI	GACNNNGTC	1 cut(s)	629
PvuII	CAGCTG	1 cut(s)	845
RruI	TCGCGA	1 cut(s)	102
RsaI	GTAC	1 cut(s)	431
RsaNI	GTAC	1 cut(s)	430
RseI	CAYNNNNRTG	2 cut(s)	303, 668
SacI	GAGCTC	1 cut(s)	707
SapI	GCTCTTC	1 cut(s)	599
SaqAI	TTAA	2 cut(s)	18, 786
Sau3AI	GATC	3 cut(s)	91, 537, 655
Sau96I	GGNCC	1 cut(s)	77
SchI	GAGTC	1 cut(s)	245
ScrFI	CCNGG	2 cut(s)	80, 81
SduI	GDGCHC	3 cut(s)	465, 665, 707
SfaNI	GCATC	1 cut(s)	426
SfuI	TTCGAA	1 cut(s)	392
SmaI	CCCGGG	1 cut(s)	81
SmiMI	CAYNNNNRTG	2 cut(s)	303, 668
SmlI	CTYRAG	2 cut(s)	17, 319
SmoI	CTYRAG	2 cut(s)	17, 319
Sse9I	AATT	8 cut(s)	119, 167, 233, 444, 634, 641, 709, 907
SsiI	CCGC	3 cut(s)	720, 759, 871
SstI	GAGCTC	1 cut(s)	707
StyD4I	CCNGG	2 cut(s)	78, 79
TaaI	ACNGT	1 cut(s)	670
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	2 cut(s)	374, 392
TasI	AATT	8 cut(s)	119, 167, 233, 444, 634, 641, 709, 907
TatI	WGTACW	1 cut(s)	429
TfiI	GAWTC	3 cut(s)	380, 828, 851
Tru1I	TTAA	2 cut(s)	18, 786
Tru9I	TTAA	2 cut(s)	18, 786
TscAI	CASTG	1 cut(s)	751
TseFI	GTSAC	1 cut(s)	765
Tsp45I	GTSAC	1 cut(s)	765
TspDTI	ATGAA	3 cut(s)	166, 588, 670
TspGWI	ACGGA	3 cut(s)	243, 456, 549
TspMI	CCCGGG	1 cut(s)	79
TspRI	CASTG	1 cut(s)	751
Tth111I	GACNNNGTC	1 cut(s)	629
Van91I	CCANNNNNTGG	1 cut(s)	592
Vha464I	CTTAAG	1 cut(s)	17
XagI	CCTNNNNNAGG	1 cut(s)	796
XapI	RAATTY	3 cut(s)	119, 167, 233
XmaI	CCCGGG	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.