Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006397

Physical Location & Seq

Genomic Coordinates Forward (+)

30748921 .. 30752586

Gene Structure 3666 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g35813.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGCTTGAAACACAAAACCAGAGCAGTCCCCTAAGTCGTCGGGAGCTAATTGGTCGTTGCTTAGTCTCCTGTGTCTTCGTCATCCTTACTCACTTGGTCCTCTCAGTGATCCCTCGCTTCTTCTCCGCCCTCTCCTTTCTAACCCAACTCGCTCTCTCGGCTCTGTTGCTTCTGCTTCTCCTGGGTTTTGGCGGATGGTGCAGAAGAACGCTTCTCAGATCAAAAGCTTCTGCTCCGGCTTTCGTCTTCTTCAATATTCTCTTCATTTGGGTGTTTTACTTCTCTGTTGTCCGACCAGCTGTGCCGCAACTAAACGATGCCGTTTTCAACTGTGGAGTTGTGTTCCTCTTTATTGGTCTCTATAGGATCATGACAAGTGACCCCGGCATTGTTAGAAATGGGTCCGCCTCTCTACAACAGCGTATGGAGAGTCCATTTTCTCAAGTTGATGAGGAGTTGGAGCAATTTGCAAGTGGTTTAGCCCATGAATCAACTCAAGATTCTGGTTTCTTAATGAGGGTAAGATACTGCAAGACCTGCAAGGTGTATATAAAGGGTCTTGATCATCATTGTCCTGCTTTTGGAAATTGCATAGGCCAAAATAATCATCCCCTCTTCTTAATTCTTCTGTTTGGATTTATTGGTACCGAAGCTGCTTATCTAGTGTGCTCATCACTCTCTGTGGCCAAATCTGGGATCTTGGAGAGACCCTCACAGCTTACTCTTTCTGAAGATTTAGTTGTTAGCACAATTCTGTTCACCATTCTCCAACTTCTATGGCAGATAAACTGGAAGAAGTATCCTGAGTTCCAACTGGTTATTCCACCTGAACCAGGACAAAACTTTGCAAATATTAGGTTCTGGAATCCATATGACAAAGGCATTGTACAGAATGTGAAGAATTTTCTAGCGTTAAGATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006497 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0012505 GO:0016409 GO:0016740 GO:0016746 GO:0016747 GO:0018345 GO:0019538 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHHC

Protein Analysis

308

Amino Acids

34.6

Weight (kDa)

8.88

Isoelectric Point (pI)

46.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHHC	PF01529	173 - 260	3.7e-15	DHHC palmitoyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006397)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g35813 FvH4_3g35813 FvH4_3g35813
malus_domestica	MD03G1096200.v1.1
prunus_persica	Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1
pyrus_communis	pycom03g07870
rosa_chinensis	RchiOBHm_Chr5g0064071
rosa_laevigata	RLG00000035699 RLG00000035701
rosa_multiflora	Rmu_sc0003547.1_g000007 Rmu_sc0005006.1_g000005
rosa_roxburghii	Rroxscaffold_1G00016800
rosa_rugosa	Rorug05G0362000 Rorug05G0362100
rosa_samantha	Rh5AG420600 Rh5BG436200 Rh5CG459000 Rh5DG449400 Rh5DG449600
rosa_wichuraiana	Rw5G039510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	545
Acc65I	GGTACC	1 cut(s)	644
AccB1I	GGYRCC	1 cut(s)	644
AciI	CCGC	4 cut(s)	126, 192, 305, 405
AclWI	GGATC	3 cut(s)	103, 374, 704
AcoI	YGGCCR	1 cut(s)	684
AcsI	RAATTY	1 cut(s)	901
AcuI	CTGAAG	1 cut(s)	750
AfaI	GTAC	2 cut(s)	646, 888
AfiI	CCNNNNNNNGG	3 cut(s)	581, 693, 833
AgsI	TTSAA	3 cut(s)	8, 253, 328
AjnI	CCWGG	2 cut(s)	180, 832
AjuI	GAANNNNNNNTTGG	2 cut(s)	804, 836
AluBI	AGCT	5 cut(s)	46, 227, 299, 653, 718
AluI	AGCT	5 cut(s)	46, 227, 299, 653, 718
Alw21I	GWGCWC	1 cut(s)	671
Alw26I	GTCTC	3 cut(s)	70, 362, 700
AlwI	GGATC	3 cut(s)	103, 374, 704
AoxI	GGCC	2 cut(s)	595, 684
ApeKI	GCWGC	1 cut(s)	653
ApoI	RAATTY	1 cut(s)	901
Asp718I	GGTACC	1 cut(s)	644
AspS9I	GGNCC	2 cut(s)	97, 402
AsuC2I	CCSGG	1 cut(s)	384
AsuHPI	GGTGA	1 cut(s)	751
AvaII	GGWCC	2 cut(s)	97, 402
BalI	TGGCCA	1 cut(s)	686
BanI	GGYRCC	1 cut(s)	644
BbsI	GAAGAC	2 cut(s)	67, 238
Bbv12I	GWGCWC	1 cut(s)	671
BbvI	GCAGC	1 cut(s)	640
BccI	CCATC	1 cut(s)	189
BceAI	ACGGC	1 cut(s)	305
BciT130I	CCWGG	2 cut(s)	182, 834
BciVI	GTATCC	1 cut(s)	810
BclI	TGATCA	1 cut(s)	562
BcnI	CCSGG	1 cut(s)	384
BcoDI	GTCTC	3 cut(s)	70, 362, 700
BfaI	CTAG	2 cut(s)	662, 908
BfmI	CTRYAG	1 cut(s)	361
BfuAI	ACCTGC	1 cut(s)	545
BfuI	GTATCC	1 cut(s)	810
BisI	GCNGC	2 cut(s)	305, 654
BlsI	GCNGC	2 cut(s)	306, 655
Bme1390I	CCNGG	3 cut(s)	182, 384, 834
Bme18I	GGWCC	2 cut(s)	97, 402
BmgT120I	GGNCC	2 cut(s)	97, 402
BmiI	GGNNCC	2 cut(s)	403, 646
BmrFI	CCNGG	3 cut(s)	182, 384, 834
BmsI	GCATC	1 cut(s)	307
BpiI	GAAGAC	2 cut(s)	67, 238
BplI	GAGNNNNNCTC	2 cut(s)	695, 727
BpuEI	CTTGAG	2 cut(s)	426, 480
BpuMI	CCSGG	1 cut(s)	384
BsaI	GGTCTC	2 cut(s)	362, 700
BsaJI	CCNNGG	2 cut(s)	181, 382
Bsc4I	CCNNNNNNNGG	3 cut(s)	581, 693, 833
Bse1I	ACTGG	2 cut(s)	794, 819
BseBI	CCWGG	2 cut(s)	182, 834
BseDI	CCNNGG	2 cut(s)	181, 382
BseGI	GGATG	3 cut(s)	81, 200, 607
BseLI	CCNNNNNNNGG	3 cut(s)	581, 693, 833
BseMII	CTCAG	3 cut(s)	117, 229, 795
BseNI	ACTGG	2 cut(s)	794, 819
BseRI	GAGGAG	1 cut(s)	467
BseXI	GCAGC	1 cut(s)	640
BsgI	GTGCAG	1 cut(s)	220
BshFI	GGCC	2 cut(s)	597, 686
BshNI	GGYRCC	1 cut(s)	644
BsiHKAI	GWGCWC	1 cut(s)	671
BsiSI	CCGG	2 cut(s)	236, 384
BslFI	GGGAC	1 cut(s)	12
BslI	CCNNNNNNNGG	3 cut(s)	581, 693, 833
BsmAI	GTCTC	3 cut(s)	70, 362, 700
BsmFI	GGGAC	1 cut(s)	12
BsnI	GGCC	2 cut(s)	597, 686
Bso31I	GGTCTC	2 cut(s)	362, 700
Bsp1286I	GDGCHC	1 cut(s)	671
Bsp1407I	TGTACA	1 cut(s)	886
Bsp143I	GATC	6 cut(s)	108, 218, 366, 562, 696, 917
BspACI	CCGC	4 cut(s)	126, 192, 305, 405
BspANI	GGCC	2 cut(s)	597, 686
BspCNI	CTCAG	3 cut(s)	116, 228, 796
BspHI	TCATGA	1 cut(s)	369
BspLI	GGNNCC	2 cut(s)	403, 646
BspMI	ACCTGC	1 cut(s)	545
BspPI	GGATC	3 cut(s)	103, 374, 704
BspT107I	GGYRCC	1 cut(s)	644
BspTNI	GGTCTC	2 cut(s)	362, 700
BsrGI	TGTACA	1 cut(s)	886
BsrI	ACTGG	2 cut(s)	794, 819
BssECI	CCNNGG	2 cut(s)	181, 382
BssMI	GATC	6 cut(s)	108, 218, 366, 562, 696, 917
Bst2UI	CCWGG	2 cut(s)	182, 834
Bst4CI	ACNGT	1 cut(s)	332
Bst6I	CTCTTC	2 cut(s)	266, 620
BstAPI	GCANNNNNTGC	1 cut(s)	537
BstAUI	TGTACA	1 cut(s)	886
BstDEI	CTNAG	5 cut(s)	32, 61, 103, 215, 804
BstENI	CCTNNNNNAGG	1 cut(s)	831
BstF5I	GGATG	3 cut(s)	81, 200, 607
BstKTI	GATC	6 cut(s)	111, 221, 369, 565, 699, 920
BstMAI	GTCTC	3 cut(s)	70, 362, 700
BstMBI	GATC	6 cut(s)	108, 218, 366, 562, 696, 917
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 198, 537
BstNI	CCWGG	2 cut(s)	182, 834
BstSCI	CCNGG	3 cut(s)	180, 382, 832
BstSFI	CTRYAG	1 cut(s)	361
BstV1I	GCAGC	1 cut(s)	640
BstV2I	GAAGAC	2 cut(s)	67, 238
BstX2I	RGATCY	1 cut(s)	696
BstYI	RGATCY	1 cut(s)	696
BsuI	GTATCC	1 cut(s)	810
BsuRI	GGCC	2 cut(s)	597, 686
BtsCI	GGATG	3 cut(s)	81, 200, 607
BtsIMutI	CAGTG	1 cut(s)	111
BveI	ACCTGC	1 cut(s)	545
CciI	TCATGA	1 cut(s)	369
Cfr13I	GGNCC	2 cut(s)	97, 402
Csp6I	GTAC	2 cut(s)	645, 887
CviAII	CATG	2 cut(s)	370, 485
CviQI	GTAC	2 cut(s)	645, 887
DdeI	CTNAG	5 cut(s)	32, 61, 103, 215, 804
DpnI	GATC	6 cut(s)	110, 220, 368, 564, 698, 919
DpnII	GATC	6 cut(s)	108, 218, 366, 562, 696, 917
EaeI	YGGCCR	1 cut(s)	684
Eam1104I	CTCTTC	2 cut(s)	266, 620
EarI	CTCTTC	2 cut(s)	266, 620
EciI	GGCGGA	3 cut(s)	115, 207, 394
Eco31I	GGTCTC	2 cut(s)	362, 700
Eco47I	GGWCC	2 cut(s)	97, 402
Eco57I	CTGAAG	1 cut(s)	750
EcoNI	CCTNNNNNAGG	1 cut(s)	831
EcoRII	CCWGG	2 cut(s)	180, 832
FaeI	CATG	2 cut(s)	373, 488
FaqI	GGGAC	1 cut(s)	12
FatI	CATG	2 cut(s)	369, 484
FauNDI	CATATG	1 cut(s)	871
FbaI	TGATCA	1 cut(s)	562
Fnu4HI	GCNGC	2 cut(s)	305, 654
FokI	GGATG	3 cut(s)	68, 207, 594
Fsp4HI	GCNGC	2 cut(s)	305, 654
FspBI	CTAG	2 cut(s)	662, 908
GluI	GCNGC	2 cut(s)	305, 654
HaeIII	GGCC	2 cut(s)	597, 686
HapII	CCGG	2 cut(s)	236, 384
Hin1II	CATG	2 cut(s)	373, 488
HindIII	AAGCTT	1 cut(s)	225
HinfI	GANTC	4 cut(s)	430, 488, 500, 865
HpaII	CCGG	2 cut(s)	236, 384
HphI	GGTGA	1 cut(s)	751
Hpy166II	GTNNAC	1 cut(s)	759
Hpy188I	TCNGA	3 cut(s)	218, 293, 730
Hpy188III	TCNNGA	6 cut(s)	41, 370, 497, 560, 803, 862
Hpy8I	GTNNAC	1 cut(s)	759
Hpy99I	CGWCG	1 cut(s)	42
HpyCH4III	ACNGT	1 cut(s)	332
HpyCH4V	TGCA	6 cut(s)	201, 470, 531, 540, 591, 848
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 198, 537
HpyF3I	CTNAG	5 cut(s)	32, 61, 103, 215, 804
Hsp92II	CATG	2 cut(s)	373, 488
KpnI	GGTACC	1 cut(s)	648
Ksp22I	TGATCA	1 cut(s)	562
Kzo9I	GATC	6 cut(s)	108, 218, 366, 562, 696, 917
LmnI	GCTCC	3 cut(s)	43, 238, 460
Lsp1109I	GCAGC	1 cut(s)	640
LweI	GCATC	1 cut(s)	307
MaeI	CTAG	2 cut(s)	662, 908
MaeIII	GTNAC	1 cut(s)	377
MalI	GATC	6 cut(s)	110, 220, 368, 564, 698, 919
MboI	GATC	6 cut(s)	108, 218, 366, 562, 696, 917
MflI	RGATCY	1 cut(s)	696
MhlI	GDGCHC	1 cut(s)	671
MlsI	TGGCCA	1 cut(s)	686
MluCI	AATT	6 cut(s)	48, 464, 586, 621, 750, 901
MluNI	TGGCCA	1 cut(s)	686
MlyI	GAGTC	1 cut(s)	439
MmeI	TCCRAC	4 cut(s)	316, 438, 793, 835
MnlI	CCTC	9 cut(s)	110, 123, 140, 356, 418, 445, 510, 623, 721
Mox20I	TGGCCA	1 cut(s)	686
MscI	TGGCCA	1 cut(s)	686
MseI	TTAA	3 cut(s)	512, 620, 914
MslI	CAYNNNNRTG	1 cut(s)	269
Msp20I	TGGCCA	1 cut(s)	686
MspA1I	CMGCKG	1 cut(s)	299
MspI	CCGG	2 cut(s)	236, 384
MspR9I	CCNGG	3 cut(s)	182, 384, 834
MvaI	CCWGG	2 cut(s)	182, 834
MwoI	GCNNNNNNNGC	3 cut(s)	158, 198, 537
NciI	CCSGG	1 cut(s)	384
NdeI	CATATG	1 cut(s)	871
NdeII	GATC	6 cut(s)	108, 218, 366, 562, 696, 917
NlaIII	CATG	2 cut(s)	373, 488
NlaIV	GGNNCC	2 cut(s)	403, 646
NmeAIII	GCCGAG	1 cut(s)	137
NmuCI	GTSAC	1 cut(s)	377
PagI	TCATGA	1 cut(s)	369
PfeI	GAWTC	3 cut(s)	488, 500, 865
PkrI	GCNGC	2 cut(s)	306, 655
PleI	GAGTC	1 cut(s)	438
PpsI	GAGTC	1 cut(s)	438
Psp6I	CCWGG	2 cut(s)	180, 832
PspGI	CCWGG	2 cut(s)	180, 832
PspN4I	GGNNCC	2 cut(s)	403, 646
PspPI	GGNCC	2 cut(s)	97, 402
PsrI	GAACNNNNNNTAC	2 cut(s)	791, 823
PsuI	RGATCY	1 cut(s)	696
PvuII	CAGCTG	1 cut(s)	299
RsaI	GTAC	2 cut(s)	646, 888
RsaNI	GTAC	2 cut(s)	645, 887
RseI	CAYNNNNRTG	1 cut(s)	269
SaqAI	TTAA	3 cut(s)	512, 620, 914
SatI	GCNGC	2 cut(s)	305, 654
Sau3AI	GATC	6 cut(s)	108, 218, 366, 562, 696, 917
Sau96I	GGNCC	2 cut(s)	97, 402
SchI	GAGTC	1 cut(s)	439
ScrFI	CCNGG	3 cut(s)	182, 384, 834
SduI	GDGCHC	1 cut(s)	671
SetI	ASST	9 cut(s)	48, 229, 301, 539, 546, 655, 720, 829, 860
SfaNI	GCATC	1 cut(s)	307
SfcI	CTRYAG	1 cut(s)	361
SinI	GGWCC	2 cut(s)	97, 402
SmiMI	CAYNNNNRTG	1 cut(s)	269
SmlI	CTYRAG	2 cut(s)	441, 495
SmoI	CTYRAG	2 cut(s)	441, 495
Sse9I	AATT	6 cut(s)	48, 464, 586, 621, 750, 901
SsiI	CCGC	4 cut(s)	126, 192, 305, 405
SspI	AATATT	2 cut(s)	256, 853
SspMI	CTAG	2 cut(s)	662, 908
StyD4I	CCNGG	3 cut(s)	180, 382, 832
TaaI	ACNGT	1 cut(s)	332
TasI	AATT	6 cut(s)	48, 464, 586, 621, 750, 901
TatI	WGTACW	1 cut(s)	886
TauI	GCSGC	1 cut(s)	307
TfiI	GAWTC	3 cut(s)	488, 500, 865
Tru1I	TTAA	3 cut(s)	512, 620, 914
Tru9I	TTAA	3 cut(s)	512, 620, 914
TscAI	CASTG	1 cut(s)	111
TseFI	GTSAC	1 cut(s)	377
TseI	GCWGC	1 cut(s)	653
Tsp45I	GTSAC	1 cut(s)	377
TspDTI	ATGAA	2 cut(s)	253, 501
TspRI	CASTG	1 cut(s)	111
VpaK11BI	GGWCC	2 cut(s)	97, 402
XagI	CCTNNNNNAGG	1 cut(s)	831
XapI	RAATTY	1 cut(s)	901
XspI	CTAG	2 cut(s)	662, 908

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.