Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0006397

Physical Location & Seq

Genomic Coordinates Forward (+)

72524362 .. 72526699

Gene Structure 2338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG420600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGTGCAGAAGAACGCTTCTCAGAGCAAAAGCTTCTGCTCCGACTTTCTTTTTCTTCAATATTCTCTTCATATGGGGGTTTTACTTCTCTGTAATCCGACCACTGTGCCGCAACTAGACGATGCCGTTTTCAACTGTGGAGTTGTGTTCTTCTTTATTGGTCTCTATAGTATCATAACAAGTGACCCTGGCATTGTTACAAATGGGGAATGCAAATACTCTGTAATCATACCTATTGGTCTTAACCATCATTGTCCTGCTTTGGGAAATTGTATAGGCCAAAATAATCATCCCCTTTTCCTAATTGTTCTGTTTGGATTTATCAGTACCGAAGCTTCTTATCTATCCAAATCCGGGATCTTAGATAGACCTACCTCAGAGATAAACGGGAAGAAGTGTCCAGAGTTCCAACGTGTTACTCCACTGCAACCAGGACAATACTTCACAAATGTTACATTCAGGAATCCATATGATAAAATGCATTGTACCCAATTTGAAGGATTTTGTAGCATTAGGACATACAAGTTCTCAATTCCTGTTGCTGTCATTGTTCCATCCATGAGGAAAGCAGTCTCCCTTTATTGCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006497 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0012505 GO:0016409 GO:0016740 GO:0016746 GO:0016747 GO:0018345 GO:0019538 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHHC

Protein Analysis

196

Amino Acids

21.84

Weight (kDa)

8.32

Isoelectric Point (pI)

31.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHHC	PF01529	79 - 109	4.7e-08	DHHC palmitoyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0006397)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g35813 FvH4_3g35813 FvH4_3g35813
malus_domestica	MD03G1096200.v1.1
prunus_persica	Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1
pyrus_communis	pycom03g07870
rosa_chinensis	RchiOBHm_Chr5g0064071
rosa_laevigata	RLG00000035699 RLG00000035701
rosa_multiflora	Rmu_sc0003547.1_g000007 Rmu_sc0005006.1_g000005
rosa_roxburghii	Rroxscaffold_1G00016800
rosa_rugosa	Rorug05G0362000 Rorug05G0362100
rosa_samantha	Rh5AG420600 Rh5BG436200 Rh5CG459000 Rh5DG449400 Rh5DG449600
rosa_wichuraiana	Rw5G039510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	589
AciI	CCGC	1 cut(s)	110
AclWI	GGATC	1 cut(s)	365
AfaI	GTAC	2 cut(s)	328, 487
AfiI	CCNNNNNNNGG	2 cut(s)	263, 354
AflIII	ACRYGT	1 cut(s)	412
AgsI	TTSAA	3 cut(s)	59, 133, 497
AjnI	CCWGG	2 cut(s)	187, 430
AluBI	AGCT	2 cut(s)	33, 335
AluI	AGCT	2 cut(s)	33, 335
Alw26I	GTCTC	2 cut(s)	167, 577
AlwI	GGATC	1 cut(s)	365
AoxI	GGCC	1 cut(s)	277
AsuC2I	CCSGG	1 cut(s)	355
BarI	GAAGNNNNNNTAC	2 cut(s)	319, 351
BccI	CCATC	2 cut(s)	255, 562
BceAI	ACGGC	1 cut(s)	110
BcgI	CGANNNNNNTGC	2 cut(s)	88, 122
BciT130I	CCWGG	2 cut(s)	189, 432
BcnI	CCSGG	1 cut(s)	355
BcoDI	GTCTC	2 cut(s)	167, 577
BfaI	CTAG	1 cut(s)	116
BfmI	CTRYAG	1 cut(s)	166
BisI	GCNGC	1 cut(s)	110
BlsI	GCNGC	1 cut(s)	111
Bme1390I	CCNGG	3 cut(s)	189, 355, 432
BmrFI	CCNGG	3 cut(s)	189, 355, 432
BmsI	GCATC	1 cut(s)	112
BpuMI	CCSGG	1 cut(s)	355
BsaI	GGTCTC	1 cut(s)	167
BsaJI	CCNNGG	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	2 cut(s)	263, 354
BseBI	CCWGG	2 cut(s)	189, 432
BseDI	CCNNGG	1 cut(s)	187
BseGI	GGATG	2 cut(s)	289, 554
BseLI	CCNNNNNNNGG	2 cut(s)	263, 354
BseMII	CTCAG	2 cut(s)	35, 390
BsgI	GTGCAG	1 cut(s)	26
BshFI	GGCC	1 cut(s)	279
BsiSI	CCGG	1 cut(s)	354
BslI	CCNNNNNNNGG	2 cut(s)	263, 354
BsmAI	GTCTC	2 cut(s)	167, 577
BsmI	GAATGC	1 cut(s)	215
BsnI	GGCC	1 cut(s)	279
Bso31I	GGTCTC	1 cut(s)	167
Bsp143I	GATC	1 cut(s)	357
BspACI	CCGC	1 cut(s)	110
BspANI	GGCC	1 cut(s)	279
BspCNI	CTCAG	2 cut(s)	34, 389
BspPI	GGATC	1 cut(s)	365
BspTNI	GGTCTC	1 cut(s)	167
BssECI	CCNNGG	1 cut(s)	187
BssMI	GATC	1 cut(s)	357
Bst2UI	CCWGG	2 cut(s)	189, 432
Bst4CI	ACNGT	2 cut(s)	106, 137
Bst6I	CTCTTC	1 cut(s)	72
BstDEI	CTNAG	3 cut(s)	21, 361, 376
BstF5I	GGATG	2 cut(s)	289, 554
BstKTI	GATC	1 cut(s)	360
BstMAI	GTCTC	2 cut(s)	167, 577
BstMBI	GATC	1 cut(s)	357
BstNI	CCWGG	2 cut(s)	189, 432
BstSCI	CCNGG	3 cut(s)	187, 353, 430
BstSFI	CTRYAG	1 cut(s)	166
BstX2I	RGATCY	1 cut(s)	357
BstYI	RGATCY	1 cut(s)	357
BsuRI	GGCC	1 cut(s)	279
BtsCI	GGATG	2 cut(s)	289, 554
BtsI	GCAGTG	1 cut(s)	422
BtsIMutI	CAGTG	2 cut(s)	102, 422
Csp6I	GTAC	2 cut(s)	327, 486
CviAII	CATG	1 cut(s)	559
CviJI	RGCY	3 cut(s)	33, 279, 335
CviKI_1	RGCY	3 cut(s)	33, 279, 335
CviQI	GTAC	2 cut(s)	327, 486
DdeI	CTNAG	3 cut(s)	21, 361, 376
DpnI	GATC	1 cut(s)	359
DpnII	GATC	1 cut(s)	357
Eam1104I	CTCTTC	1 cut(s)	72
EarI	CTCTTC	1 cut(s)	72
Eco31I	GGTCTC	1 cut(s)	167
EcoRII	CCWGG	2 cut(s)	187, 430
EcoT22I	ATGCAT	1 cut(s)	483
FaeI	CATG	1 cut(s)	562
FatI	CATG	1 cut(s)	558
FauNDI	CATATG	2 cut(s)	72, 469
Fnu4HI	GCNGC	1 cut(s)	110
FokI	GGATG	2 cut(s)	276, 541
Fsp4HI	GCNGC	1 cut(s)	110
FspBI	CTAG	1 cut(s)	116
GluI	GCNGC	1 cut(s)	110
HaeIII	GGCC	1 cut(s)	279
HapII	CCGG	1 cut(s)	354
Hin1II	CATG	1 cut(s)	562
HindIII	AAGCTT	2 cut(s)	31, 333
HinfI	GANTC	1 cut(s)	463
HpaII	CCGG	1 cut(s)	354
Hpy188I	TCNGA	4 cut(s)	24, 43, 99, 379
Hpy188III	TCNNGA	2 cut(s)	401, 460
HpyAV	CCTTC	1 cut(s)	491
HpyCH4III	ACNGT	2 cut(s)	106, 137
HpyCH4IV	ACGT	1 cut(s)	412
HpyCH4V	TGCA	4 cut(s)	7, 213, 427, 481
HpyF3I	CTNAG	3 cut(s)	21, 361, 376
HpySE526I	ACGT	1 cut(s)	412
Hsp92II	CATG	1 cut(s)	562
Kzo9I	GATC	1 cut(s)	357
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	9 cut(s)	174, 201, 270, 367, 414, 417, 444, 445, 549
LweI	GCATC	1 cut(s)	112
MaeI	CTAG	1 cut(s)	116
MaeII	ACGT	1 cut(s)	412
MaeIII	GTNAC	4 cut(s)	182, 196, 415, 451
MalI	GATC	1 cut(s)	359
MboI	GATC	1 cut(s)	357
MboII	GAAGA	5 cut(s)	22, 47, 59, 142, 403
MflI	RGATCY	1 cut(s)	357
MluCI	AATT	4 cut(s)	268, 303, 491, 531
MmeI	TCCRAC	3 cut(s)	66, 122, 433
MnlI	CCTC	2 cut(s)	385, 555
Mph1103I	ATGCAT	1 cut(s)	483
MseI	TTAA	1 cut(s)	243
MspI	CCGG	1 cut(s)	354
MspR9I	CCNGG	3 cut(s)	189, 355, 432
Mva1269I	GAATGC	1 cut(s)	215
MvaI	CCWGG	2 cut(s)	189, 432
NciI	CCSGG	1 cut(s)	355
NdeI	CATATG	2 cut(s)	72, 469
NdeII	GATC	1 cut(s)	357
NlaIII	CATG	1 cut(s)	562
NmuCI	GTSAC	1 cut(s)	182
NsiI	ATGCAT	1 cut(s)	483
PctI	GAATGC	1 cut(s)	215
PfeI	GAWTC	1 cut(s)	463
PfoI	TCCNGGA	1 cut(s)	353
PkrI	GCNGC	1 cut(s)	111
PsiI	TTATAA	1 cut(s)	589
Psp6I	CCWGG	2 cut(s)	187, 430
PspGI	CCWGG	2 cut(s)	187, 430
PsuI	RGATCY	1 cut(s)	357
RsaI	GTAC	2 cut(s)	328, 487
RsaNI	GTAC	2 cut(s)	327, 486
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	1 cut(s)	110
Sau3AI	GATC	1 cut(s)	357
ScrFI	CCNGG	3 cut(s)	189, 355, 432
SetI	ASST	6 cut(s)	35, 235, 337, 373, 377, 415
SfaNI	GCATC	1 cut(s)	112
SfcI	CTRYAG	1 cut(s)	166
Sse9I	AATT	4 cut(s)	268, 303, 491, 531
SsiI	CCGC	1 cut(s)	110
SspI	AATATT	1 cut(s)	62
SspMI	CTAG	1 cut(s)	116
StyD4I	CCNGG	3 cut(s)	187, 353, 430
TaaI	ACNGT	2 cut(s)	106, 137
TaiI	ACGT	1 cut(s)	415
TasI	AATT	4 cut(s)	268, 303, 491, 531
TauI	GCSGC	1 cut(s)	112
TfiI	GAWTC	1 cut(s)	463
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TscAI	CASTG	2 cut(s)	109, 429
TseFI	GTSAC	1 cut(s)	182
Tsp45I	GTSAC	1 cut(s)	182
TspDTI	ATGAA	1 cut(s)	59
TspRI	CASTG	2 cut(s)	109, 429
XspI	CTAG	1 cut(s)	116
Zsp2I	ATGCAT	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.