Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0006397

Physical Location & Seq

Genomic Coordinates Reverse (-)

6244897 .. 6247568

Gene Structure 2672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g07870.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGACGAAACACCAGATGAAAGAAAGCGCTCGGGTCGGTCCAAGTCAATTGGTCCCTGCATAGTCTCCTGTATCTTCGTCTTCCTCACTCACCTGGTCCTCTCTCTCGTCCCCCGCTTCTTCTCCGCCTCTTCCTTCCTCGCCCAACTCGCTCTCTCGGCCCTGCTGCTTCTCTTCTTTCTGGGTTTTGGCGGATGGTGCAGAAGGACCCTTCTGAAACGCCGCGCTTCAGCTCCGGCTTTCGTGTTCTTCAACATTCTCTTCATTTGGGGGTTTTACATCTCAGTTATCAGTCAAGCTGTGTCACTGCTCAACGATGCCGTTTTCAGCTGTGAGGTTGTCTTCCTCCTCATTGGTCTCTACAGTATAATTACGAGTGACCCTGGCTTTGTAACAAATGGGTTTGCCTCTTCAGACCAAGTTGCGGAGGGTTCAGTTTCTGAAGTTCATAATCATGAGAAGGAGTTGGAGGTTTTAGCAAGTGGTTTATCTGACGACTCAACTGAAGGTTCTGGTTTGGTTACGAGGGTACGATATTGCAGGATCTGCAAGGCACACATAAAGGGTCTTGATCACCATTGCCCAGCTTTTGGGAACTGTATAGGACAAAAGAATCATCCCCTTTTTCTAGTTCTTCTGTTTGGATTGATCATTACTGAGGCTTCTTATTTAGTATGCACATCACTCTTTGTTGCCAAATCCGGAATCTTACGTAGACCTAGCTTGGAGCCTACTCTTTCTGAAAATTTAACTGTTAGCACAATTCTGTTCATCATTCTCCAAACTGATGAGTGGATAAACTGGAAGAAGCATCCAGAGTTCCAACTTCTTGTTCAACCTCAGCCAGGGAAAAACTTCACGAGTATAAAGTTCAGAAATCCTTATGACAAAGGCATTCGACAGAATGTCAAGGAGTTTCTAGCGTTAAGAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006497 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0012505 GO:0016409 GO:0016740 GO:0016746 GO:0016747 GO:0018345 GO:0019538 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHHC

Protein Analysis

312

Amino Acids

34.67

Weight (kDa)

8.72

Isoelectric Point (pI)

39.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006397)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g35813 FvH4_3g35813 FvH4_3g35813
malus_domestica	MD03G1096200.v1.1
prunus_persica	Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1
pyrus_communis	pycom03g07870
rosa_chinensis	RchiOBHm_Chr5g0064071
rosa_laevigata	RLG00000035699 RLG00000035701
rosa_multiflora	Rmu_sc0003547.1_g000007 Rmu_sc0005006.1_g000005
rosa_roxburghii	Rroxscaffold_1G00016800
rosa_rugosa	Rorug05G0362000 Rorug05G0362100
rosa_samantha	Rh5AG420600 Rh5BG436200 Rh5CG459000 Rh5DG449400 Rh5DG449600
rosa_wichuraiana	Rw5G039510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	590
AccI	GTMKAC	1 cut(s)	715
AccII	CGCG	1 cut(s)	225
AccIII	TCCGGA	1 cut(s)	701
AciI	CCGC	5 cut(s)	115, 126, 192, 223, 425
AclWI	GGATC	1 cut(s)	551
AcsI	RAATTY	1 cut(s)	745
AcuI	CTGAAG	4 cut(s)	213, 396, 462, 525
AfaI	GTAC	1 cut(s)	531
AfeI	AGCGCT	1 cut(s)	29
AfiI	CCNNNNNNNGG	3 cut(s)	424, 590, 845
AgsI	TTSAA	2 cut(s)	253, 836
AhdI	GACNNNNNGTC	1 cut(s)	905
AjnI	CCWGG	3 cut(s)	93, 382, 844
AjuI	GAANNNNNNNTTGG	2 cut(s)	816, 848
AluBI	AGCT	5 cut(s)	233, 299, 330, 587, 723
AluI	AGCT	5 cut(s)	233, 299, 330, 587, 723
Alw26I	GTCTC	2 cut(s)	70, 362
AlwI	GGATC	1 cut(s)	551
AlwNI	CAGNNNCTG	2 cut(s)	440, 546
Ama87I	CYCGRG	1 cut(s)	31
Aor13HI	TCCGGA	1 cut(s)	701
Aor51HI	AGCGCT	1 cut(s)	29
AoxI	GGCC	1 cut(s)	159
ApeKI	GCWGC	1 cut(s)	166
ApoI	RAATTY	1 cut(s)	745
ArsI	GACNNNNNNTTYG	2 cut(s)	371, 403
Asp700I	GAANNNNTTC	1 cut(s)	854
AspLEI	GCGC	2 cut(s)	30, 227
AspS9I	GGNCC	5 cut(s)	39, 53, 97, 160, 207
AsuHPI	GGTGA	2 cut(s)	83, 566
AvaI	CYCGRG	1 cut(s)	31
AvaII	GGWCC	4 cut(s)	39, 53, 97, 207
BauI	CACGAG	1 cut(s)	859
BbsI	GAAGAC	2 cut(s)	73, 334
BbvCI	CCTCAGC	1 cut(s)	840
BbvI	GCAGC	1 cut(s)	153
BccI	CCATC	1 cut(s)	189
BceAI	ACGGC	1 cut(s)	305
BciT130I	CCWGG	3 cut(s)	95, 384, 846
BclI	TGATCA	2 cut(s)	571, 648
BcoDI	GTCTC	2 cut(s)	70, 362
BfaI	CTAG	3 cut(s)	629, 720, 920
BfmI	CTRYAG	1 cut(s)	361
BfoI	RGCGCY	1 cut(s)	31
BisI	GCNGC	2 cut(s)	167, 223
BlsI	GCNGC	2 cut(s)	168, 224
Bme1390I	CCNGG	3 cut(s)	95, 384, 846
Bme18I	GGWCC	4 cut(s)	39, 53, 97, 207
BmeRI	GACNNNNNGTC	1 cut(s)	905
BmeT110I	CYCGRG	1 cut(s)	31
BmgT120I	GGNCC	5 cut(s)	39, 53, 97, 160, 207
BmiI	GGNNCC	3 cut(s)	55, 209, 729
BmrFI	CCNGG	3 cut(s)	95, 384, 846
BmsI	GCATC	2 cut(s)	307, 820
BpiI	GAAGAC	2 cut(s)	73, 334
Bpu10I	CCTNAGC	1 cut(s)	840
BsaAI	YACGTR	1 cut(s)	713
BsaI	GGTCTC	1 cut(s)	362
BsaJI	CCNNGG	2 cut(s)	382, 845
BsaWI	WCCGGW	1 cut(s)	701
Bsc4I	CCNNNNNNNGG	3 cut(s)	424, 590, 845
Bse1I	ACTGG	1 cut(s)	806
Bse3DI	GCAATG	1 cut(s)	577
BseAI	TCCGGA	1 cut(s)	701
BseBI	CCWGG	3 cut(s)	95, 384, 846
BseDI	CCNNGG	2 cut(s)	382, 845
BseGI	GGATG	3 cut(s)	200, 616, 811
BseLI	CCNNNNNNNGG	3 cut(s)	424, 590, 845
BseMI	GCAATG	1 cut(s)	577
BseMII	CTCAG	3 cut(s)	297, 648, 854
BseNI	ACTGG	1 cut(s)	806
BseRI	GAGGAG	1 cut(s)	338
BseXI	GCAGC	1 cut(s)	153
BseYI	CCCAGC	1 cut(s)	583
BsgI	GTGCAG	1 cut(s)	220
Bsh1236I	CGCG	1 cut(s)	225
BshFI	GGCC	1 cut(s)	161
BsiHKCI	CYCGRG	1 cut(s)	31
BsiSI	CCGG	2 cut(s)	236, 702
BslFI	GGGAC	2 cut(s)	39, 95
BslI	CCNNNNNNNGG	3 cut(s)	424, 590, 845
BsmAI	GTCTC	2 cut(s)	70, 362
BsmFI	GGGAC	2 cut(s)	39, 95
BsmI	GAATGC	1 cut(s)	894
BsnI	GGCC	1 cut(s)	161
Bso31I	GGTCTC	1 cut(s)	362
BsoBI	CYCGRG	1 cut(s)	31
Bsp13I	TCCGGA	1 cut(s)	701
Bsp143I	GATC	3 cut(s)	543, 571, 648
BspACI	CCGC	5 cut(s)	115, 126, 192, 223, 425
BspANI	GGCC	1 cut(s)	161
BspCNI	CTCAG	3 cut(s)	296, 649, 853
BspEI	TCCGGA	1 cut(s)	701
BspFNI	CGCG	1 cut(s)	225
BspHI	TCATGA	1 cut(s)	454
BspLI	GGNNCC	3 cut(s)	55, 209, 729
BspPI	GGATC	1 cut(s)	551
BspTNI	GGTCTC	1 cut(s)	362
BsrDI	GCAATG	1 cut(s)	577
BsrI	ACTGG	1 cut(s)	806
BssECI	CCNNGG	2 cut(s)	382, 845
BssMI	GATC	3 cut(s)	543, 571, 648
BssSI	CACGAG	1 cut(s)	859
Bst2BI	CACGAG	1 cut(s)	859
Bst2UI	CCWGG	3 cut(s)	95, 384, 846
Bst4CI	ACNGT	3 cut(s)	365, 599, 754
Bst6I	CTCTTC	4 cut(s)	136, 179, 266, 415
BstAPI	GCANNNNNTGC	1 cut(s)	546
BstBAI	YACGTR	1 cut(s)	713
BstDEI	CTNAG	3 cut(s)	283, 657, 840
BstENI	CCTNNNNNAGG	1 cut(s)	843
BstF5I	GGATG	3 cut(s)	200, 616, 811
BstFNI	CGCG	1 cut(s)	225
BstH2I	RGCGCY	1 cut(s)	31
BstHHI	GCGC	2 cut(s)	30, 227
BstKTI	GATC	3 cut(s)	546, 574, 651
BstMAI	GTCTC	2 cut(s)	70, 362
BstMBI	GATC	3 cut(s)	543, 571, 648
BstMWI	GCNNNNNNNGC	5 cut(s)	149, 158, 198, 546, 929
BstNI	CCWGG	3 cut(s)	95, 384, 846
BstSCI	CCNGG	3 cut(s)	93, 382, 844
BstSFI	CTRYAG	1 cut(s)	361
BstSNI	TACGTA	1 cut(s)	713
BstUI	CGCG	1 cut(s)	225
BstV1I	GCAGC	1 cut(s)	153
BstV2I	GAAGAC	2 cut(s)	73, 334
BstX2I	RGATCY	1 cut(s)	543
BstYI	RGATCY	1 cut(s)	543
BsuRI	GGCC	1 cut(s)	161
BtsCI	GGATG	3 cut(s)	200, 616, 811
BtsI	GCAGTG	1 cut(s)	305
BtsIMutI	CAGTG	1 cut(s)	305
CaiI	CAGNNNCTG	2 cut(s)	440, 546
CciI	TCATGA	1 cut(s)	454
CfoI	GCGC	2 cut(s)	30, 227
Cfr13I	GGNCC	5 cut(s)	39, 53, 97, 160, 207
CsiI	ACCWGGT	1 cut(s)	93
Csp6I	GTAC	1 cut(s)	530
CviAII	CATG	1 cut(s)	455
CviQI	GTAC	1 cut(s)	530
DdeI	CTNAG	3 cut(s)	283, 657, 840
DpnI	GATC	3 cut(s)	545, 573, 650
DpnII	GATC	3 cut(s)	543, 571, 648
DriI	GACNNNNNGTC	1 cut(s)	905
Eam1104I	CTCTTC	4 cut(s)	136, 179, 266, 415
Eam1105I	GACNNNNNGTC	1 cut(s)	905
EarI	CTCTTC	4 cut(s)	136, 179, 266, 415
EciI	GGCGGA	2 cut(s)	115, 207
Eco105I	TACGTA	1 cut(s)	713
Eco31I	GGTCTC	1 cut(s)	362
Eco47I	GGWCC	4 cut(s)	39, 53, 97, 207
Eco47III	AGCGCT	1 cut(s)	29
Eco57I	CTGAAG	4 cut(s)	213, 396, 462, 525
Eco88I	CYCGRG	1 cut(s)	31
EcoNI	CCTNNNNNAGG	1 cut(s)	843
EcoO109I	RGGNCCY	1 cut(s)	207
EcoRII	CCWGG	3 cut(s)	93, 382, 844
FaeI	CATG	1 cut(s)	458
FaiI	YATR	9 cut(s)	62, 368, 450, 456, 560, 602, 676, 866, 885
FaqI	GGGAC	2 cut(s)	39, 95
FatI	CATG	1 cut(s)	454
FauI	CCCGC	1 cut(s)	122
FbaI	TGATCA	2 cut(s)	571, 648
FblI	GTMKAC	1 cut(s)	715
Fnu4HI	GCNGC	2 cut(s)	167, 223
FokI	GGATG	3 cut(s)	207, 603, 798
Fsp4HI	GCNGC	2 cut(s)	167, 223
FspBI	CTAG	3 cut(s)	629, 720, 920
GlaI	GCGC	2 cut(s)	29, 226
GluI	GCNGC	2 cut(s)	167, 223
GsaI	CCCAGC	1 cut(s)	587
HaeII	RGCGCY	1 cut(s)	31
HaeIII	GGCC	1 cut(s)	161
HapII	CCGG	2 cut(s)	236, 702
HhaI	GCGC	2 cut(s)	30, 227
Hin1II	CATG	1 cut(s)	458
Hin6I	GCGC	2 cut(s)	28, 225
HinP1I	GCGC	2 cut(s)	28, 225
HinfI	GANTC	3 cut(s)	497, 613, 705
HpaII	CCGG	2 cut(s)	236, 702
HphI	GGTGA	2 cut(s)	83, 566
Hpy166II	GTNNAC	1 cut(s)	716
Hpy188I	TCNGA	6 cut(s)	216, 415, 442, 493, 742, 875
Hpy188III	TCNNGA	5 cut(s)	455, 569, 702, 815, 859
Hpy8I	GTNNAC	1 cut(s)	716
HpyAV	CCTTC	5 cut(s)	145, 198, 221, 454, 500
HpyCH4III	ACNGT	3 cut(s)	365, 599, 754
HpyCH4IV	ACGT	1 cut(s)	712
HpyCH4V	TGCA	5 cut(s)	60, 201, 540, 549, 678
HpyF10VI	GCNNNNNNNGC	5 cut(s)	149, 158, 198, 546, 929
HpyF3I	CTNAG	3 cut(s)	283, 657, 840
HpySE526I	ACGT	1 cut(s)	712
Hsp92II	CATG	1 cut(s)	458
HspAI	GCGC	2 cut(s)	28, 225
Kpn2I	TCCGGA	1 cut(s)	701
Ksp22I	TGATCA	2 cut(s)	571, 648
Kzo9I	GATC	3 cut(s)	543, 571, 648
LmnI	GCTCC	2 cut(s)	238, 727
Lsp1109I	GCAGC	1 cut(s)	153
LweI	GCATC	2 cut(s)	307, 820
MabI	ACCWGGT	1 cut(s)	93
MaeI	CTAG	3 cut(s)	629, 720, 920
MaeII	ACGT	1 cut(s)	712
MaeIII	GTNAC	4 cut(s)	303, 377, 391, 520
MalI	GATC	3 cut(s)	545, 573, 650
MboI	GATC	3 cut(s)	543, 571, 648
MfeI	CAATTG	1 cut(s)	48
MflI	RGATCY	1 cut(s)	543
MluCI	AATT	4 cut(s)	48, 369, 745, 762
MlyI	GAGTC	1 cut(s)	491
MmeI	TCCRAC	2 cut(s)	447, 847
MroI	TCCGGA	1 cut(s)	701
MroXI	GAANNNNTTC	1 cut(s)	854
MseI	TTAA	2 cut(s)	749, 926
MslI	CAYNNNNRTG	1 cut(s)	453
MspA1I	CMGCKG	1 cut(s)	330
MspI	CCGG	2 cut(s)	236, 702
MspR9I	CCNGG	3 cut(s)	95, 384, 846
MunI	CAATTG	1 cut(s)	48
Mva1269I	GAATGC	1 cut(s)	894
MvaI	CCWGG	3 cut(s)	95, 384, 846
MvnI	CGCG	1 cut(s)	225
MwoI	GCNNNNNNNGC	5 cut(s)	149, 158, 198, 546, 929
NdeII	GATC	3 cut(s)	543, 571, 648
NlaIII	CATG	1 cut(s)	458
NlaIV	GGNNCC	3 cut(s)	55, 209, 729
NmeAIII	GCCGAG	1 cut(s)	137
NmuCI	GTSAC	2 cut(s)	303, 377
PagI	TCATGA	1 cut(s)	454
PctI	GAATGC	1 cut(s)	894
PdmI	GAANNNNTTC	1 cut(s)	854
PfeI	GAWTC	2 cut(s)	613, 705
PflMI	CCANNNNNTGG	1 cut(s)	590
PkrI	GCNGC	2 cut(s)	168, 224
PleI	GAGTC	1 cut(s)	491
PpsI	GAGTC	1 cut(s)	491
Ppu21I	YACGTR	1 cut(s)	713
PpuMI	RGGWCCY	1 cut(s)	207
Psp5II	RGGWCCY	1 cut(s)	207
Psp6I	CCWGG	3 cut(s)	93, 382, 844
PspFI	CCCAGC	1 cut(s)	583
PspGI	CCWGG	3 cut(s)	93, 382, 844
PspN4I	GGNNCC	3 cut(s)	55, 209, 729
PspPI	GGNCC	5 cut(s)	39, 53, 97, 160, 207
PspPPI	RGGWCCY	1 cut(s)	207
PstNI	CAGNNNCTG	2 cut(s)	440, 546
PsuI	RGATCY	1 cut(s)	543
PvuII	CAGCTG	1 cut(s)	330
RsaI	GTAC	1 cut(s)	531
RsaNI	GTAC	1 cut(s)	530
RseI	CAYNNNNRTG	1 cut(s)	453
SaqAI	TTAA	2 cut(s)	749, 926
SatI	GCNGC	2 cut(s)	167, 223
Sau3AI	GATC	3 cut(s)	543, 571, 648
Sau96I	GGNCC	5 cut(s)	39, 53, 97, 160, 207
SchI	GAGTC	1 cut(s)	491
ScrFI	CCNGG	3 cut(s)	95, 384, 846
SexAI	ACCWGGT	1 cut(s)	93
SfaNI	GCATC	2 cut(s)	307, 820
SfcI	CTRYAG	1 cut(s)	361
SinI	GGWCC	4 cut(s)	39, 53, 97, 207
SmiMI	CAYNNNNRTG	1 cut(s)	453
SnaBI	TACGTA	1 cut(s)	713
Sse9I	AATT	4 cut(s)	48, 369, 745, 762
SsiI	CCGC	5 cut(s)	115, 126, 192, 223, 425
SspMI	CTAG	3 cut(s)	629, 720, 920
StyD4I	CCNGG	3 cut(s)	93, 382, 844
TaaI	ACNGT	3 cut(s)	365, 599, 754
TaiI	ACGT	1 cut(s)	715
TaqI	TCGA	1 cut(s)	898
TaqII	GACCGA	1 cut(s)	27
TasI	AATT	4 cut(s)	48, 369, 745, 762
TauI	GCSGC	1 cut(s)	225
TfiI	GAWTC	2 cut(s)	613, 705
Tru1I	TTAA	2 cut(s)	749, 926
Tru9I	TTAA	2 cut(s)	749, 926
TscAI	CASTG	1 cut(s)	312
TseFI	GTSAC	2 cut(s)	303, 377
TseI	GCWGC	1 cut(s)	166
Tsp45I	GTSAC	2 cut(s)	303, 377
TspDTI	ATGAA	4 cut(s)	33, 253, 437, 760
TspRI	CASTG	1 cut(s)	312
Van91I	CCANNNNNTGG	1 cut(s)	590
VpaK11BI	GGWCC	4 cut(s)	39, 53, 97, 207
XagI	CCTNNNNNAGG	1 cut(s)	843
XapI	RAATTY	1 cut(s)	745
XmiI	GTMKAC	1 cut(s)	715
XmnI	GAANNNNTTC	1 cut(s)	854
XspI	CTAG	3 cut(s)	629, 720, 920

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.