Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0006397

Physical Location & Seq

Genomic Coordinates Forward (+)

69703439 .. 69705910

Gene Structure 2472 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G039510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGTTTACCGTTCTTACTTTACGATTTTCCTGTAGAAGCTTAGAAACTTTGAATGAAAATCCCAAAAGCGATGCTGAAACACAGAACCGGAGCAATCCCCTAAGTCGGTCCAAGCTAATTGGCCGTTGCATTGTCTCCTGTATCTTCGTCTTTCTCACTCACTTGGCTCTCTCTGTGATCCCTCGCTTCTTCTCCGCTTTCTCCTTTCTAACCCAACTCGCTCTCTCGGCTCTGCTGCTTCTGCTGCTCGTGGGTTTTGGCGGATGGTGCAGAAGAACGCTTCTTAGAGCAAAAGCTTCGGCTCCGGCTTTGTCGTCTTCTTCAATATTCTCTTCATTTGGGGCTGTGCCGCAACTAAACGATGCCGTTTTCAACTGTGGAGTCGTGTTCCTCGTTATTGGTCTCTATAGTATCATAACAAGTGACCCTGGCATTGTTACAAATGGGTCTGCCTATCCAGACCAGCCTATGGAGAGCTCACTTTCTCAAGTTGATAAGGAGTTGGAGCCCTTAGCAAGTGGTTTAGGCCATGAGTTGACTCATGATTCCGGGTTGTTAATGAGGGTAAGATACTGCAAAACCTGCAAGGCATACATAAAGGGTCTTGACCATCATTGTCCTGCTTTTGGGAATTGTATAGGCCAAAATAATCATCCCCTTTTCTTAATTCTTCTGTTTGGATTTATCGGTACTGAAGCTTCTTATCTAGTGTGCTCATCACTCTTTGCAGCCAAATCCAGGATCCCGGATAGACCCTCAGAGCTTACTCTTTCTGAAAGTTTAGCTGTTAGCACAATTCTGTTCACCATTCTCCAACTGCTATGGCAGGTGGTCTTTTTGATATGGCACATATATTGTTTATGCGTGAACATCAGAACTGATGAGTGGATAAAATGGAAGAAGTATCCAGAGTTCCAACTTGTTATTCCACCTGAACCAGGACAAAGCTTCAGAAATATTAGGTTCTGGAATCCATATGACAAAGGCATTGTACAGAATGTGAAGGAGTTTCTGGCCATCCAGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006497 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0012505 GO:0016409 GO:0016740 GO:0016746 GO:0016747 GO:0018345 GO:0019538 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHHC

Protein Analysis

342

Amino Acids

38.22

Weight (kDa)

8.58

Isoelectric Point (pI)

37.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHHC	PF01529	188 - 300	3.6e-20	DHHC palmitoyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006397)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g35813 FvH4_3g35813 FvH4_3g35813
malus_domestica	MD03G1096200.v1.1
prunus_persica	Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1
pyrus_communis	pycom03g07870
rosa_chinensis	RchiOBHm_Chr5g0064071
rosa_laevigata	RLG00000035699 RLG00000035701
rosa_multiflora	Rmu_sc0003547.1_g000007 Rmu_sc0005006.1_g000005
rosa_roxburghii	Rroxscaffold_1G00016800
rosa_rugosa	Rorug05G0362000 Rorug05G0362100
rosa_samantha	Rh5AG420600 Rh5BG436200 Rh5CG459000 Rh5DG449400 Rh5DG449600
rosa_wichuraiana	Rw5G039510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	817
Acc36I	ACCTGC	2 cut(s)	590, 817
AccB7I	CCANNNNNTGG	1 cut(s)	469
AciI	CCGC	3 cut(s)	195, 261, 350
AclWI	GGATC	3 cut(s)	172, 736, 749
AcoI	YGGCCR	2 cut(s)	121, 1014
AcuI	CTGAAG	2 cut(s)	714, 934
AfaI	GTAC	2 cut(s)	691, 993
AfiI	CCNNNNNNNGG	5 cut(s)	105, 469, 626, 738, 938
AgsI	TTSAA	3 cut(s)	52, 324, 373
AjnI	CCWGG	3 cut(s)	427, 737, 937
AjuI	GAANNNNNNNTTGG	2 cut(s)	909, 941
AluBI	AGCT	8 cut(s)	39, 115, 296, 477, 698, 763, 785, 948
AluI	AGCT	8 cut(s)	39, 115, 296, 477, 698, 763, 785, 948
Alw21I	GWGCWC	2 cut(s)	479, 716
Alw26I	GTCTC	2 cut(s)	139, 407
AlwI	GGATC	3 cut(s)	172, 736, 749
AoxI	GGCC	4 cut(s)	121, 526, 640, 1014
ApeKI	GCWGC	3 cut(s)	235, 244, 728
AspS9I	GGNCC	1 cut(s)	108
AsuC2I	CCSGG	2 cut(s)	550, 746
AsuHPI	GGTGA	1 cut(s)	796
AvaII	GGWCC	1 cut(s)	108
BalI	TGGCCA	1 cut(s)	1016
BamHI	GGATCC	1 cut(s)	741
BanII	GRGCYC	2 cut(s)	479, 510
BarI	GAAGNNNNNNTAC	2 cut(s)	682, 714
BauI	CACGAG	1 cut(s)	248
BbsI	GAAGAC	1 cut(s)	309
Bbv12I	GWGCWC	2 cut(s)	479, 716
BbvI	GCAGC	3 cut(s)	222, 231, 740
BccI	CCATC	3 cut(s)	258, 618, 1025
BceAI	ACGGC	2 cut(s)	108, 350
BcgI	CGANNNNNNTGC	2 cut(s)	279, 313
BciT130I	CCWGG	3 cut(s)	429, 739, 939
BciVI	GTATCC	1 cut(s)	915
BcnI	CCSGG	2 cut(s)	550, 746
BcoDI	GTCTC	2 cut(s)	139, 407
BfaI	CTAG	1 cut(s)	707
BfmI	CTRYAG	2 cut(s)	31, 406
BfuAI	ACCTGC	2 cut(s)	590, 817
BfuI	GTATCC	1 cut(s)	915
BisI	GCNGC	4 cut(s)	236, 245, 350, 729
BlsI	GCNGC	4 cut(s)	237, 246, 351, 730
Bme1390I	CCNGG	5 cut(s)	429, 550, 739, 746, 939
Bme18I	GGWCC	1 cut(s)	108
BmgT120I	GGNCC	1 cut(s)	108
BmiI	GGNNCC	3 cut(s)	303, 507, 743
BmrFI	CCNGG	5 cut(s)	429, 550, 739, 746, 939
BmsI	GCATC	2 cut(s)	61, 352
BpiI	GAAGAC	1 cut(s)	309
Bpu10I	CCTNAGC	1 cut(s)	511
BpuEI	CTTGAG	1 cut(s)	471
BpuMI	CCSGG	2 cut(s)	550, 746
BsaI	GGTCTC	1 cut(s)	407
BsaJI	CCNNGG	1 cut(s)	427
BsaWI	WCCGGW	1 cut(s)	87
Bsc4I	CCNNNNNNNGG	5 cut(s)	105, 469, 626, 738, 938
BseBI	CCWGG	3 cut(s)	429, 739, 939
BseDI	CCNNGG	1 cut(s)	427
BseGI	GGATG	3 cut(s)	269, 652, 1017
BseLI	CCNNNNNNNGG	5 cut(s)	105, 469, 626, 738, 938
BseMII	CTCAG	1 cut(s)	771
BseXI	GCAGC	3 cut(s)	222, 231, 740
BsgI	GTGCAG	1 cut(s)	289
BshFI	GGCC	4 cut(s)	123, 528, 642, 1016
BsiHKAI	GWGCWC	2 cut(s)	479, 716
BsiSI	CCGG	4 cut(s)	88, 305, 549, 746
BslI	CCNNNNNNNGG	5 cut(s)	105, 469, 626, 738, 938
BsmAI	GTCTC	2 cut(s)	139, 407
BsnI	GGCC	4 cut(s)	123, 528, 642, 1016
Bso31I	GGTCTC	1 cut(s)	407
Bsp1286I	GDGCHC	3 cut(s)	479, 510, 716
Bsp1407I	TGTACA	1 cut(s)	991
Bsp143I	GATC	2 cut(s)	177, 741
BspACI	CCGC	3 cut(s)	195, 261, 350
BspANI	GGCC	4 cut(s)	123, 528, 642, 1016
BspCNI	CTCAG	1 cut(s)	770
BspHI	TCATGA	1 cut(s)	541
BspLI	GGNNCC	3 cut(s)	303, 507, 743
BspMI	ACCTGC	2 cut(s)	590, 817
BspPI	GGATC	3 cut(s)	172, 736, 749
BspTNI	GGTCTC	1 cut(s)	407
BsrGI	TGTACA	1 cut(s)	991
BssECI	CCNNGG	1 cut(s)	427
BssMI	GATC	2 cut(s)	177, 741
BssSI	CACGAG	1 cut(s)	248
Bst2BI	CACGAG	1 cut(s)	248
Bst2UI	CCWGG	3 cut(s)	429, 739, 939
Bst4CI	ACNGT	2 cut(s)	10, 377
Bst6I	CTCTTC	1 cut(s)	337
BstAPI	GCANNNNNTGC	1 cut(s)	582
BstAUI	TGTACA	1 cut(s)	991
BstDEI	CTNAG	5 cut(s)	40, 101, 284, 511, 757
BstENI	CCTNNNNNAGG	1 cut(s)	936
BstF5I	GGATG	3 cut(s)	269, 652, 1017
BstKTI	GATC	2 cut(s)	180, 744
BstMAI	GTCTC	2 cut(s)	139, 407
BstMBI	GATC	2 cut(s)	177, 741
BstMWI	GCNNNNNNNGC	5 cut(s)	227, 241, 244, 267, 582
BstNI	CCWGG	3 cut(s)	429, 739, 939
BstSCI	CCNGG	5 cut(s)	427, 548, 737, 744, 937
BstSFI	CTRYAG	2 cut(s)	31, 406
BstV1I	GCAGC	3 cut(s)	222, 231, 740
BstV2I	GAAGAC	1 cut(s)	309
BstX2I	RGATCY	1 cut(s)	741
BstYI	RGATCY	1 cut(s)	741
BsuI	GTATCC	1 cut(s)	915
BsuRI	GGCC	4 cut(s)	123, 528, 642, 1016
BtgZI	GCGATG	1 cut(s)	84
BtsCI	GGATG	3 cut(s)	269, 652, 1017
BveI	ACCTGC	2 cut(s)	590, 817
CciI	TCATGA	1 cut(s)	541
Cfr13I	GGNCC	1 cut(s)	108
Csp6I	GTAC	2 cut(s)	690, 992
CviAII	CATG	2 cut(s)	530, 542
CviQI	GTAC	2 cut(s)	690, 992
DdeI	CTNAG	5 cut(s)	40, 101, 284, 511, 757
DpnI	GATC	2 cut(s)	179, 743
DpnII	GATC	2 cut(s)	177, 741
EaeI	YGGCCR	2 cut(s)	121, 1014
Eam1104I	CTCTTC	1 cut(s)	337
EarI	CTCTTC	1 cut(s)	337
EciI	GGCGGA	1 cut(s)	276
Ecl136II	GAGCTC	1 cut(s)	477
Eco24I	GRGCYC	2 cut(s)	479, 510
Eco31I	GGTCTC	1 cut(s)	407
Eco47I	GGWCC	1 cut(s)	108
Eco53kI	GAGCTC	1 cut(s)	477
Eco57I	CTGAAG	2 cut(s)	714, 934
EcoICRI	GAGCTC	1 cut(s)	477
EcoNI	CCTNNNNNAGG	1 cut(s)	936
EcoRII	CCWGG	3 cut(s)	427, 737, 937
EcoT38I	GRGCYC	2 cut(s)	479, 510
FaeI	CATG	2 cut(s)	533, 545
FatI	CATG	2 cut(s)	529, 541
FauNDI	CATATG	1 cut(s)	976
Fnu4HI	GCNGC	4 cut(s)	236, 245, 350, 729
FokI	GGATG	3 cut(s)	276, 639, 1004
FriOI	GRGCYC	2 cut(s)	479, 510
Fsp4HI	GCNGC	4 cut(s)	236, 245, 350, 729
FspBI	CTAG	1 cut(s)	707
GluI	GCNGC	4 cut(s)	236, 245, 350, 729
HaeIII	GGCC	4 cut(s)	123, 528, 642, 1016
HapII	CCGG	4 cut(s)	88, 305, 549, 746
Hin1II	CATG	2 cut(s)	533, 545
HincII	GTYRAC	1 cut(s)	537
HindII	GTYRAC	1 cut(s)	537
HindIII	AAGCTT	4 cut(s)	37, 294, 696, 946
HinfI	GANTC	4 cut(s)	381, 538, 545, 970
HpaII	CCGG	4 cut(s)	88, 305, 549, 746
HphI	GGTGA	1 cut(s)	796
Hpy166II	GTNNAC	4 cut(s)	6, 537, 804, 868
Hpy188I	TCNGA	4 cut(s)	760, 775, 875, 953
Hpy188III	TCNNGA	5 cut(s)	458, 542, 605, 908, 967
Hpy8I	GTNNAC	4 cut(s)	6, 537, 804, 868
HpyAV	CCTTC	1 cut(s)	997
HpyCH4III	ACNGT	2 cut(s)	10, 377
HpyCH4V	TGCA	5 cut(s)	129, 270, 576, 585, 728
HpyF10VI	GCNNNNNNNGC	5 cut(s)	227, 241, 244, 267, 582
HpyF3I	CTNAG	5 cut(s)	40, 101, 284, 511, 757
Hsp92II	CATG	2 cut(s)	533, 545
Kzo9I	GATC	2 cut(s)	177, 741
LmnI	GCTCC	3 cut(s)	90, 307, 505
Lsp1109I	GCAGC	3 cut(s)	222, 231, 740
LweI	GCATC	2 cut(s)	61, 352
MaeI	CTAG	1 cut(s)	707
MaeIII	GTNAC	2 cut(s)	422, 436
MalI	GATC	2 cut(s)	179, 743
MboI	GATC	2 cut(s)	177, 741
MboII	GAAGA	8 cut(s)	136, 181, 285, 309, 312, 324, 662, 910
MflI	RGATCY	1 cut(s)	741
MhlI	GDGCHC	3 cut(s)	479, 510, 716
MlsI	TGGCCA	1 cut(s)	1016
MluCI	AATT	4 cut(s)	117, 631, 666, 795
MluNI	TGGCCA	1 cut(s)	1016
MlyI	GAGTC	2 cut(s)	390, 532
MmeI	TCCRAC	3 cut(s)	483, 838, 940
MnlI	CCTC	4 cut(s)	192, 401, 555, 766
Mox20I	TGGCCA	1 cut(s)	1016
MscI	TGGCCA	1 cut(s)	1016
MseI	TTAA	3 cut(s)	557, 665, 1027
Msp20I	TGGCCA	1 cut(s)	1016
MspI	CCGG	4 cut(s)	88, 305, 549, 746
MspR9I	CCNGG	5 cut(s)	429, 550, 739, 746, 939
MvaI	CCWGG	3 cut(s)	429, 739, 939
MwoI	GCNNNNNNNGC	5 cut(s)	227, 241, 244, 267, 582
NciI	CCSGG	2 cut(s)	550, 746
NdeI	CATATG	1 cut(s)	976
NdeII	GATC	2 cut(s)	177, 741
NlaIII	CATG	2 cut(s)	533, 545
NlaIV	GGNNCC	3 cut(s)	303, 507, 743
NmeAIII	GCCGAG	1 cut(s)	206
NmuCI	GTSAC	1 cut(s)	422
PagI	TCATGA	1 cut(s)	541
PaqCI	CACCTGC	1 cut(s)	817
PcsI	WCGNNNNNNNCGW	1 cut(s)	390
PfeI	GAWTC	2 cut(s)	545, 970
PflMI	CCANNNNNTGG	1 cut(s)	469
PfoI	TCCNGGA	2 cut(s)	737, 744
PkrI	GCNGC	4 cut(s)	237, 246, 351, 730
PleI	GAGTC	2 cut(s)	389, 532
PpsI	GAGTC	2 cut(s)	389, 532
Psp124BI	GAGCTC	1 cut(s)	479
Psp6I	CCWGG	3 cut(s)	427, 737, 937
PspGI	CCWGG	3 cut(s)	427, 737, 937
PspN4I	GGNNCC	3 cut(s)	303, 507, 743
PspPI	GGNCC	1 cut(s)	108
PsrI	GAACNNNNNNTAC	2 cut(s)	896, 928
PsuI	RGATCY	1 cut(s)	741
RsaI	GTAC	2 cut(s)	691, 993
RsaNI	GTAC	2 cut(s)	690, 992
SacI	GAGCTC	1 cut(s)	479
SaqAI	TTAA	3 cut(s)	557, 665, 1027
SatI	GCNGC	4 cut(s)	236, 245, 350, 729
Sau3AI	GATC	2 cut(s)	177, 741
Sau96I	GGNCC	1 cut(s)	108
SchI	GAGTC	2 cut(s)	390, 532
ScrFI	CCNGG	5 cut(s)	429, 550, 739, 746, 939
SduI	GDGCHC	3 cut(s)	479, 510, 716
SfaNI	GCATC	2 cut(s)	61, 352
SfcI	CTRYAG	2 cut(s)	31, 406
SinI	GGWCC	1 cut(s)	108
SmlI	CTYRAG	1 cut(s)	486
SmoI	CTYRAG	1 cut(s)	486
Sse9I	AATT	4 cut(s)	117, 631, 666, 795
SsiI	CCGC	3 cut(s)	195, 261, 350
SspI	AATATT	2 cut(s)	327, 958
SspMI	CTAG	1 cut(s)	707
SstI	GAGCTC	1 cut(s)	479
StyD4I	CCNGG	5 cut(s)	427, 548, 737, 744, 937
TaaI	ACNGT	2 cut(s)	10, 377
TaqII	GACCGA	1 cut(s)	96
TasI	AATT	4 cut(s)	117, 631, 666, 795
TatI	WGTACW	1 cut(s)	991
TauI	GCSGC	1 cut(s)	352
TfiI	GAWTC	2 cut(s)	545, 970
Tru1I	TTAA	3 cut(s)	557, 665, 1027
Tru9I	TTAA	3 cut(s)	557, 665, 1027
TseFI	GTSAC	1 cut(s)	422
TseI	GCWGC	3 cut(s)	235, 244, 728
Tsp45I	GTSAC	1 cut(s)	422
TspDTI	ATGAA	2 cut(s)	69, 324
Van91I	CCANNNNNTGG	1 cut(s)	469
VpaK11BI	GGWCC	1 cut(s)	108
XagI	CCTNNNNNAGG	1 cut(s)	936
XspI	CTAG	1 cut(s)	707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.