RLG00000035699

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0006397
Physical Location & Seq
Forward (+)
70433988 .. 70492081
58094 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035699

Sequence Viewer

Length: 1002 bp
ATGAAAATCCCAAAAGCTATGCTTGAAACACAGAACCGGAGCAATCCCCTAAGTCGGTCCAAGCTGATTGGCCGTTGCATAGTCTCCTGTATCTTCGTCTTTCTCACTCACTTGGCTCTCTCTGTGATCCCTCGCTTCTTCTCCGCTTTCTCCATTCTAACCCAACTAGCTCTCTCGGCTCTGCTGCTCCTGCTGCTCGTGGGTTTTGGCGGATGGTGCAGAAGAACGCTTCTTAGAGCAAAAGCTTCGGCTCCGGCTTTCGTCTTCTTCAATATTCTCTTCATTTGGGGGTTTTACTTCTCTGTTATCCGACCAGCTGTGCCGCAGCTACACGATGTCGTTTTCAACTGTGGAGTTGTGTTCCTCTTTATTGGTCTCTATAGTATCATAACAAGTGACCCTGGCATTGTTACAAATGGGTCTGCCTCTCCAGACCAGCCCATGGAGAGCTCACTTTCTCAAGTTGATAAGGAGTTGGAGCCCTTAGCAAGTGGTTTAGGCCATGAGTTGACTCATGATTCAGGGTTGTTAATGAGGGTAAGATACTGCAAAACCTGCAAGGCATACATAAAGGGTCTTGACCATCATTGTCCTGCTTTTGGGAATTGTATAGGCCAAAATAATCATCCCCTTTTCTTAATTCTTCTGTTTGGATTTATCGGTACCGAAGCTTCTTATCTAGTGTGCTCATCACTCTTTGCGGCCAAATCCAGGATCTTGGATAAACCCTCAGAGCTTACTCTTTCTGAAAGTTTAGCTGTTAGCACAATTCTGTTCACCATTCTCCAACTGCTATGGCAGGTGGTGTTTTTGATACGGCACATATATTGTTTGTGCGTGAACATCAGAACTGATGAGTGGATAAAATGGAAGAAGTATCCAGAGTTCCAACTTGTTATTCCACCCGAACCAGGGCAAAGCTTCAGAAATATTAGGTTCTGGAATCCATATGACAAAGGCATTGTACAGAATGTGAAGGAGTTTCTAGCGATCCAGCACTAA

Protein Analysis

334

Amino Acids

37.52

Weight (kDa)

9.04

Isoelectric Point (pI)

38.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 179 - 291 2e-20 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 790
Acc36I ACCTGC 2 cut(s) 563, 790
Acc65I GGTACC 1 cut(s) 662
AccB1I GGYRCC 1 cut(s) 662
AccB7I CCANNNNNTGG 1 cut(s) 442
AciI CCGC 4 cut(s) 144, 210, 323, 701
AclWI GGATC 3 cut(s) 121, 722, 985
AcoI YGGCCR 2 cut(s) 70, 702
AcuI CTGAAG 1 cut(s) 907
AfaI GTAC 2 cut(s) 664, 966
AfiI CCNNNNNNNGG 6 cut(s) 54, 442, 599, 711, 911, 912
AgsI TTSAA 3 cut(s) 26, 271, 346
AjnI CCWGG 3 cut(s) 400, 710, 910
AjuI GAANNNNNNNTTGG 2 cut(s) 882, 914
Alw21I GWGCWC 2 cut(s) 452, 689
Alw26I GTCTC 2 cut(s) 88, 380
AlwI GGATC 3 cut(s) 121, 722, 985
AoxI GGCC 4 cut(s) 70, 499, 613, 702
ApeKI GCWGC 3 cut(s) 184, 193, 325
Asp718I GGTACC 1 cut(s) 662
AspS9I GGNCC 1 cut(s) 57
AsuHPI GGTGA 1 cut(s) 769
AvaII GGWCC 1 cut(s) 57
BanI GGYRCC 1 cut(s) 662
BanII GRGCYC 2 cut(s) 452, 483
BarI GAAGNNNNNNTAC 2 cut(s) 655, 687
BauI CACGAG 1 cut(s) 197
BbsI GAAGAC 1 cut(s) 256
Bbv12I GWGCWC 2 cut(s) 452, 689
BbvI GCAGC 3 cut(s) 171, 180, 337
BccI CCATC 2 cut(s) 207, 591
BceAI ACGGC 2 cut(s) 57, 833
BcgI CGANNNNNNTGC 2 cut(s) 228, 262
BciT130I CCWGG 3 cut(s) 402, 712, 912
BciVI GTATCC 1 cut(s) 888
BcoDI GTCTC 2 cut(s) 88, 380
BfaI CTAG 3 cut(s) 167, 680, 986
BfmI CTRYAG 1 cut(s) 379
BfuAI ACCTGC 2 cut(s) 563, 790
BfuI GTATCC 1 cut(s) 888
BisI GCNGC 5 cut(s) 185, 194, 323, 326, 702
BlsI GCNGC 5 cut(s) 186, 195, 324, 327, 703
Bme1390I CCNGG 3 cut(s) 402, 712, 912
Bme18I GGWCC 1 cut(s) 57
BmgT120I GGNCC 1 cut(s) 57
BmiI GGNNCC 3 cut(s) 252, 480, 664
BmrFI CCNGG 3 cut(s) 402, 712, 912
BpiI GAAGAC 1 cut(s) 256
BpmI CTGGAG 1 cut(s) 414
Bpu10I CCTNAGC 1 cut(s) 484
BpuEI CTTGAG 1 cut(s) 444
BsaI GGTCTC 1 cut(s) 380
BsaJI CCNNGG 3 cut(s) 400, 441, 911
BsaWI WCCGGW 1 cut(s) 36
Bsc4I CCNNNNNNNGG 6 cut(s) 54, 442, 599, 711, 911, 912
BseBI CCWGG 3 cut(s) 402, 712, 912
BseDI CCNNGG 3 cut(s) 400, 441, 911
BseGI GGATG 2 cut(s) 218, 625
BseLI CCNNNNNNNGG 6 cut(s) 54, 442, 599, 711, 911, 912
BseMII CTCAG 1 cut(s) 744
BseXI GCAGC 3 cut(s) 171, 180, 337
BsgI GTGCAG 1 cut(s) 238
BshFI GGCC 4 cut(s) 72, 501, 615, 704
BshNI GGYRCC 1 cut(s) 662
BsiHKAI GWGCWC 2 cut(s) 452, 689
BsiSI CCGG 2 cut(s) 37, 254
BslI CCNNNNNNNGG 6 cut(s) 54, 442, 599, 711, 911, 912
BsmAI GTCTC 2 cut(s) 88, 380
BsnI GGCC 4 cut(s) 72, 501, 615, 704
Bso31I GGTCTC 1 cut(s) 380
Bsp1286I GDGCHC 3 cut(s) 452, 483, 689
Bsp1407I TGTACA 1 cut(s) 964
Bsp143I GATC 3 cut(s) 126, 714, 990
Bsp19I CCATGG 1 cut(s) 441
BspACI CCGC 4 cut(s) 144, 210, 323, 701
BspANI GGCC 4 cut(s) 72, 501, 615, 704
BspCNI CTCAG 1 cut(s) 743
BspHI TCATGA 1 cut(s) 514
BspLI GGNNCC 3 cut(s) 252, 480, 664
BspMI ACCTGC 2 cut(s) 563, 790
BspPI GGATC 3 cut(s) 121, 722, 985
BspT107I GGYRCC 1 cut(s) 662
BspTNI GGTCTC 1 cut(s) 380
BsrGI TGTACA 1 cut(s) 964
BssECI CCNNGG 3 cut(s) 400, 441, 911
BssMI GATC 3 cut(s) 126, 714, 990
BssSI CACGAG 1 cut(s) 197
BssT1I CCWWGG 1 cut(s) 441
Bst2BI CACGAG 1 cut(s) 197
Bst2UI CCWGG 3 cut(s) 402, 712, 912
Bst4CI ACNGT 1 cut(s) 350
Bst6I CTCTTC 1 cut(s) 284
BstAPI GCANNNNNTGC 1 cut(s) 555
BstAUI TGTACA 1 cut(s) 964
BstDEI CTNAG 4 cut(s) 50, 233, 484, 730
BstDSI CCRYGG 1 cut(s) 441
BstF5I GGATG 2 cut(s) 218, 625
BstKTI GATC 3 cut(s) 129, 717, 993
BstMAI GTCTC 2 cut(s) 88, 380
BstMBI GATC 3 cut(s) 126, 714, 990
BstMWI GCNNNNNNNGC 5 cut(s) 176, 190, 193, 216, 555
BstNI CCWGG 3 cut(s) 402, 712, 912
BstSCI CCNGG 3 cut(s) 400, 710, 910
BstSFI CTRYAG 1 cut(s) 379
BstV1I GCAGC 3 cut(s) 171, 180, 337
BstV2I GAAGAC 1 cut(s) 256
BstX2I RGATCY 1 cut(s) 714
BstXI CCANNNNNNTGG 1 cut(s) 718
BstYI RGATCY 1 cut(s) 714
BsuI GTATCC 1 cut(s) 888
BsuRI GGCC 4 cut(s) 72, 501, 615, 704
BtgI CCRYGG 1 cut(s) 441
BtsCI GGATG 2 cut(s) 218, 625
BveI ACCTGC 2 cut(s) 563, 790
CciI TCATGA 1 cut(s) 514
Cfr13I GGNCC 1 cut(s) 57
Csp6I GTAC 2 cut(s) 663, 965
CviAII CATG 3 cut(s) 442, 503, 515
CviQI GTAC 2 cut(s) 663, 965
DdeI CTNAG 4 cut(s) 50, 233, 484, 730
DpnI GATC 3 cut(s) 128, 716, 992
DpnII GATC 3 cut(s) 126, 714, 990
EaeI YGGCCR 2 cut(s) 70, 702
Eam1104I CTCTTC 1 cut(s) 284
EarI CTCTTC 1 cut(s) 284
EciI GGCGGA 1 cut(s) 225
Ecl136II GAGCTC 1 cut(s) 450
Eco130I CCWWGG 1 cut(s) 441
Eco24I GRGCYC 2 cut(s) 452, 483
Eco31I GGTCTC 1 cut(s) 380
Eco47I GGWCC 1 cut(s) 57
Eco53kI GAGCTC 1 cut(s) 450
Eco57I CTGAAG 1 cut(s) 907
EcoICRI GAGCTC 1 cut(s) 450
EcoRII CCWGG 3 cut(s) 400, 710, 910
EcoT14I CCWWGG 1 cut(s) 441
EcoT38I GRGCYC 2 cut(s) 452, 483
ErhI CCWWGG 1 cut(s) 441
FaeI CATG 3 cut(s) 445, 506, 518
FalI AAGNNNNNCTT 1 cut(s) 38
FatI CATG 3 cut(s) 441, 502, 514
FauNDI CATATG 1 cut(s) 949
Fnu4HI GCNGC 5 cut(s) 185, 194, 323, 326, 702
FokI GGATG 2 cut(s) 225, 612
FriOI GRGCYC 2 cut(s) 452, 483
Fsp4HI GCNGC 5 cut(s) 185, 194, 323, 326, 702
FspBI CTAG 3 cut(s) 167, 680, 986
GluI GCNGC 5 cut(s) 185, 194, 323, 326, 702
GsuI CTGGAG 1 cut(s) 414
HaeIII GGCC 4 cut(s) 72, 501, 615, 704
HapII CCGG 2 cut(s) 37, 254
Hin1II CATG 3 cut(s) 445, 506, 518
HincII GTYRAC 1 cut(s) 510
HindII GTYRAC 1 cut(s) 510
HindIII AAGCTT 3 cut(s) 243, 669, 919
HinfI GANTC 3 cut(s) 511, 518, 943
HpaII CCGG 2 cut(s) 37, 254
HphI GGTGA 1 cut(s) 769
Hpy166II GTNNAC 3 cut(s) 510, 777, 841
Hpy188I TCNGA 5 cut(s) 311, 733, 748, 848, 926
Hpy188III TCNNGA 5 cut(s) 431, 515, 578, 881, 940
Hpy8I GTNNAC 3 cut(s) 510, 777, 841
HpyAV CCTTC 1 cut(s) 970
HpyCH4III ACNGT 1 cut(s) 350
HpyCH4V TGCA 4 cut(s) 78, 219, 549, 558
HpyF10VI GCNNNNNNNGC 5 cut(s) 176, 190, 193, 216, 555
HpyF3I CTNAG 4 cut(s) 50, 233, 484, 730
Hsp92II CATG 3 cut(s) 445, 506, 518
KpnI GGTACC 1 cut(s) 666
Kzo9I GATC 3 cut(s) 126, 714, 990
LmnI GCTCC 4 cut(s) 39, 192, 256, 478
Lsp1109I GCAGC 3 cut(s) 171, 180, 337
MaeI CTAG 3 cut(s) 167, 680, 986
MaeIII GTNAC 2 cut(s) 395, 409
MalI GATC 3 cut(s) 128, 716, 992
MboI GATC 3 cut(s) 126, 714, 990
MboII GAAGA 8 cut(s) 85, 130, 234, 256, 259, 271, 635, 883
MflI RGATCY 1 cut(s) 714
MhlI GDGCHC 3 cut(s) 452, 483, 689
MluCI AATT 3 cut(s) 604, 639, 768
MlyI GAGTC 1 cut(s) 505
MmeI TCCRAC 4 cut(s) 334, 456, 811, 913
MnlI CCTC 5 cut(s) 141, 374, 436, 528, 739
MseI TTAA 2 cut(s) 530, 638
MspA1I CMGCKG 1 cut(s) 317
MspI CCGG 2 cut(s) 37, 254
MspR9I CCNGG 3 cut(s) 402, 712, 912
MvaI CCWGG 3 cut(s) 402, 712, 912
MwoI GCNNNNNNNGC 5 cut(s) 176, 190, 193, 216, 555
NcoI CCATGG 1 cut(s) 441
NdeI CATATG 1 cut(s) 949
NdeII GATC 3 cut(s) 126, 714, 990
NlaIII CATG 3 cut(s) 445, 506, 518
NlaIV GGNNCC 3 cut(s) 252, 480, 664
NmeAIII GCCGAG 1 cut(s) 155
NmuCI GTSAC 1 cut(s) 395
PagI TCATGA 1 cut(s) 514
PaqCI CACCTGC 1 cut(s) 790
PfeI GAWTC 2 cut(s) 518, 943
PflMI CCANNNNNTGG 1 cut(s) 442
PfoI TCCNGGA 1 cut(s) 710
PkrI GCNGC 5 cut(s) 186, 195, 324, 327, 703
PleI GAGTC 1 cut(s) 505
PpsI GAGTC 1 cut(s) 505
Psp124BI GAGCTC 1 cut(s) 452
Psp6I CCWGG 3 cut(s) 400, 710, 910
PspGI CCWGG 3 cut(s) 400, 710, 910
PspN4I GGNNCC 3 cut(s) 252, 480, 664
PspPI GGNCC 1 cut(s) 57
PsrI GAACNNNNNNTAC 2 cut(s) 869, 901
PsuI RGATCY 1 cut(s) 714
PvuII CAGCTG 1 cut(s) 317
RsaI GTAC 2 cut(s) 664, 966
RsaNI GTAC 2 cut(s) 663, 965
SacI GAGCTC 1 cut(s) 452
SaqAI TTAA 2 cut(s) 530, 638
SatI GCNGC 5 cut(s) 185, 194, 323, 326, 702
Sau3AI GATC 3 cut(s) 126, 714, 990
Sau96I GGNCC 1 cut(s) 57
SchI GAGTC 1 cut(s) 505
ScrFI CCNGG 3 cut(s) 402, 712, 912
SduI GDGCHC 3 cut(s) 452, 483, 689
SfcI CTRYAG 1 cut(s) 379
SinI GGWCC 1 cut(s) 57
SmlI CTYRAG 1 cut(s) 459
SmoI CTYRAG 1 cut(s) 459
Sse9I AATT 3 cut(s) 604, 639, 768
SsiI CCGC 4 cut(s) 144, 210, 323, 701
SspI AATATT 2 cut(s) 274, 931
SspMI CTAG 3 cut(s) 167, 680, 986
SstI GAGCTC 1 cut(s) 452
StyD4I CCNGG 3 cut(s) 400, 710, 910
StyI CCWWGG 1 cut(s) 441
TaaI ACNGT 1 cut(s) 350
TaqII GACCGA 1 cut(s) 45
TasI AATT 3 cut(s) 604, 639, 768
TatI WGTACW 1 cut(s) 964
TauI GCSGC 2 cut(s) 325, 704
TfiI GAWTC 2 cut(s) 518, 943
Tru1I TTAA 2 cut(s) 530, 638
Tru9I TTAA 2 cut(s) 530, 638
TseFI GTSAC 1 cut(s) 395
TseI GCWGC 3 cut(s) 184, 193, 325
Tsp45I GTSAC 1 cut(s) 395
TspDTI ATGAA 2 cut(s) 17, 271
Van91I CCANNNNNTGG 1 cut(s) 442
VpaK11BI GGWCC 1 cut(s) 57
XspI CTAG 3 cut(s) 167, 680, 986
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.