Rh5BG436200

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0006397
Physical Location & Seq
Forward (+)
70206982 .. 70209564
2583 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG436200.1

Sequence Viewer

Length: 1086 bp
ATGAAAATCCCAAAAGCGATGCTAGAAACACAGAACCGGAGCAATCCCCTAAGTCGGTCCAAGCTAATTGGCCGTTGCATAGTCTCCTGTATCTTCGTCTTTCTCACTCACTTGGCTCTTTCCGTGATCCCTCGCTTCTTCTCCGCTTTCTCCTTTCTAACCCAACTCGCTCTCTCGGCTCTGCTGCTTCTGCTGCTCGTGGGTTTTGGCGGATGGTGCAGAAGAACGCTTCTTAGAGCAAAAGCTTCGGCTCCGGCTTTGGTCTTCTTCAATATTCTCTTCATTTGGGGGTTTTACTTCTCTGTTATCCGACCAGCTGTGCCGCAACTAAACGATGCCGTTTTCAACTGTGGAGTCGTGTTCCTCGTTATTGGTCTCTATAGTATCATAACAAGTGACCCTGGCATTGTTACAAATGGGTCTGCCTATCCAGACCAGCCTATGGAGAGCTCACTTTCTCAAGTTGATAAGGAGTTGGAGCCCTTAGCAAGTGGTTTAGGCCATGAGTTGACTCATGATTCCGGGTTGTTAATGAGGGTAAGATACTGCAAAACCTGCAAGGCATACATAAAGGGTCTTGACCATCATTGTCCTGCTTTTGGGAATTGTATAGGCCAAAATAATCATCCCCTTTTCTTAATTCTTCTGTTTGGATTTATCGGTACTGAAGCTTCGTATCTAGTGTGCTCATCACTCTTTGCGGCCAAATCCAGGATCTCGGATAGACCCTCAGAGCTTACTCTTTCTGAAAGTTTAGCTGTTAGCACAATTCTGTTCACCATTCTCCAACTGCTATGGCAGGTGGTCTTTTTGATATGGCACATATATTGTTTATGCGTGAACATCAGAACTGATGAATGGATAAAATGGAAGAAGTATCCAGAGTTCCAACTTGTTATTCCACCTGAACCAGGACAAAGCTTCAGAAATATTAGGTTCTGGAATCCATATGACAAAGAATCCTTGAATAGTCGTCATTGTTCCATCCATGAAGAAAGCAGTCTCCCTTTATTATATATATTCCATCTTCTATATATATTCCAGCATTTGGAGCAACATGGCAAGCCTTTGGGAGGTATGGATTAG

Protein Analysis

361

Amino Acids

40.82

Weight (kDa)

8.56

Isoelectric Point (pI)

40.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 179 - 291 2.5e-20 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 790
Acc36I ACCTGC 2 cut(s) 563, 790
AccB7I CCANNNNNTGG 2 cut(s) 442, 1048
AciI CCGC 4 cut(s) 144, 210, 323, 701
AclWI GGATC 2 cut(s) 121, 722
AcoI YGGCCR 2 cut(s) 70, 702
AcuI CTGAAG 2 cut(s) 687, 907
AfaI GTAC 1 cut(s) 664
AfiI CCNNNNNNNGG 7 cut(s) 54, 442, 599, 711, 911, 1048, 1073
AgsI TTSAA 3 cut(s) 271, 346, 967
AjnI CCWGG 3 cut(s) 400, 710, 910
AjuI GAANNNNNNNTTGG 2 cut(s) 882, 914
AluBI AGCT 8 cut(s) 64, 245, 317, 450, 671, 736, 758, 921
AluI AGCT 8 cut(s) 64, 245, 317, 450, 671, 736, 758, 921
Alw21I GWGCWC 2 cut(s) 452, 689
Alw26I GTCTC 3 cut(s) 88, 380, 1007
AlwI GGATC 2 cut(s) 121, 722
AoxI GGCC 4 cut(s) 70, 499, 613, 702
ApeKI GCWGC 2 cut(s) 184, 193
AspS9I GGNCC 1 cut(s) 57
AsuC2I CCSGG 1 cut(s) 523
AsuHPI GGTGA 1 cut(s) 769
AvaII GGWCC 1 cut(s) 57
BanII GRGCYC 2 cut(s) 452, 483
BarI GAAGNNNNNNTAC 2 cut(s) 655, 687
BauI CACGAG 1 cut(s) 197
BbsI GAAGAC 1 cut(s) 256
Bbv12I GWGCWC 2 cut(s) 452, 689
BbvI GCAGC 2 cut(s) 171, 180
BccI CCATC 4 cut(s) 207, 591, 992, 1032
BceAI ACGGC 2 cut(s) 57, 323
BcgI CGANNNNNNTGC 2 cut(s) 228, 262
BciT130I CCWGG 3 cut(s) 402, 712, 912
BciVI GTATCC 1 cut(s) 888
BcnI CCSGG 1 cut(s) 523
BcoDI GTCTC 3 cut(s) 88, 380, 1007
BfaI CTAG 2 cut(s) 23, 680
BfmI CTRYAG 1 cut(s) 379
BfuAI ACCTGC 2 cut(s) 563, 790
BfuI GTATCC 1 cut(s) 888
BisI GCNGC 4 cut(s) 185, 194, 323, 702
BlsI GCNGC 4 cut(s) 186, 195, 324, 703
Bme1390I CCNGG 4 cut(s) 402, 523, 712, 912
Bme18I GGWCC 1 cut(s) 57
BmgT120I GGNCC 1 cut(s) 57
BmiI GGNNCC 2 cut(s) 252, 480
BmrFI CCNGG 4 cut(s) 402, 523, 712, 912
BmsI GCATC 2 cut(s) 9, 325
BpiI GAAGAC 1 cut(s) 256
Bpu10I CCTNAGC 1 cut(s) 484
BpuEI CTTGAG 1 cut(s) 444
BpuMI CCSGG 1 cut(s) 523
BsaI GGTCTC 1 cut(s) 380
BsaJI CCNNGG 1 cut(s) 400
BsaWI WCCGGW 1 cut(s) 36
Bsc4I CCNNNNNNNGG 7 cut(s) 54, 442, 599, 711, 911, 1048, 1073
BseBI CCWGG 3 cut(s) 402, 712, 912
BseDI CCNNGG 1 cut(s) 400
BseGI GGATG 3 cut(s) 218, 625, 984
BseLI CCNNNNNNNGG 7 cut(s) 54, 442, 599, 711, 911, 1048, 1073
BseMII CTCAG 1 cut(s) 744
BseXI GCAGC 2 cut(s) 171, 180
BsgI GTGCAG 1 cut(s) 238
BshFI GGCC 4 cut(s) 72, 501, 615, 704
BsiHKAI GWGCWC 2 cut(s) 452, 689
BsiSI CCGG 3 cut(s) 37, 254, 522
BslI CCNNNNNNNGG 7 cut(s) 54, 442, 599, 711, 911, 1048, 1073
BsmAI GTCTC 3 cut(s) 88, 380, 1007
BsnI GGCC 4 cut(s) 72, 501, 615, 704
Bso31I GGTCTC 1 cut(s) 380
Bsp1286I GDGCHC 3 cut(s) 452, 483, 689
Bsp143I GATC 2 cut(s) 126, 714
BspACI CCGC 4 cut(s) 144, 210, 323, 701
BspANI GGCC 4 cut(s) 72, 501, 615, 704
BspCNI CTCAG 1 cut(s) 743
BspHI TCATGA 1 cut(s) 514
BspLI GGNNCC 2 cut(s) 252, 480
BspMI ACCTGC 2 cut(s) 563, 790
BspPI GGATC 2 cut(s) 121, 722
BspTNI GGTCTC 1 cut(s) 380
BssECI CCNNGG 1 cut(s) 400
BssMI GATC 2 cut(s) 126, 714
BssSI CACGAG 1 cut(s) 197
Bst2BI CACGAG 1 cut(s) 197
Bst2UI CCWGG 3 cut(s) 402, 712, 912
Bst4CI ACNGT 1 cut(s) 350
Bst6I CTCTTC 1 cut(s) 284
BstAPI GCANNNNNTGC 1 cut(s) 555
BstC8I GCNNGC 1 cut(s) 1064
BstDEI CTNAG 4 cut(s) 50, 233, 484, 730
BstENI CCTNNNNNAGG 2 cut(s) 909, 1071
BstF5I GGATG 3 cut(s) 218, 625, 984
BstKTI GATC 2 cut(s) 129, 717
BstMAI GTCTC 3 cut(s) 88, 380, 1007
BstMBI GATC 2 cut(s) 126, 714
BstMWI GCNNNNNNNGC 6 cut(s) 176, 190, 193, 216, 555, 1051
BstNI CCWGG 3 cut(s) 402, 712, 912
BstSCI CCNGG 4 cut(s) 400, 521, 710, 910
BstSFI CTRYAG 1 cut(s) 379
BstV1I GCAGC 2 cut(s) 171, 180
BstV2I GAAGAC 1 cut(s) 256
BstX2I RGATCY 1 cut(s) 714
BstYI RGATCY 1 cut(s) 714
BsuI GTATCC 1 cut(s) 888
BsuRI GGCC 4 cut(s) 72, 501, 615, 704
BtgZI GCGATG 1 cut(s) 32
BtsCI GGATG 3 cut(s) 218, 625, 984
BveI ACCTGC 2 cut(s) 563, 790
Cac8I GCNNGC 1 cut(s) 1064
CciI TCATGA 1 cut(s) 514
Cfr13I GGNCC 1 cut(s) 57
Csp6I GTAC 1 cut(s) 663
CviAII CATG 4 cut(s) 503, 515, 989, 1058
CviQI GTAC 1 cut(s) 663
DdeI CTNAG 4 cut(s) 50, 233, 484, 730
DpnI GATC 2 cut(s) 128, 716
DpnII GATC 2 cut(s) 126, 714
EaeI YGGCCR 2 cut(s) 70, 702
Eam1104I CTCTTC 1 cut(s) 284
EarI CTCTTC 1 cut(s) 284
EciI GGCGGA 1 cut(s) 225
Ecl136II GAGCTC 1 cut(s) 450
Eco24I GRGCYC 2 cut(s) 452, 483
Eco31I GGTCTC 1 cut(s) 380
Eco47I GGWCC 1 cut(s) 57
Eco53kI GAGCTC 1 cut(s) 450
Eco57I CTGAAG 2 cut(s) 687, 907
EcoICRI GAGCTC 1 cut(s) 450
EcoNI CCTNNNNNAGG 2 cut(s) 909, 1071
EcoRII CCWGG 3 cut(s) 400, 710, 910
EcoT38I GRGCYC 2 cut(s) 452, 483
FaeI CATG 4 cut(s) 506, 518, 992, 1061
FatI CATG 4 cut(s) 502, 514, 988, 1057
FauNDI CATATG 1 cut(s) 949
Fnu4HI GCNGC 4 cut(s) 185, 194, 323, 702
FokI GGATG 3 cut(s) 225, 612, 971
FriOI GRGCYC 2 cut(s) 452, 483
Fsp4HI GCNGC 4 cut(s) 185, 194, 323, 702
FspBI CTAG 2 cut(s) 23, 680
GluI GCNGC 4 cut(s) 185, 194, 323, 702
HaeIII GGCC 4 cut(s) 72, 501, 615, 704
HapII CCGG 3 cut(s) 37, 254, 522
Hin1II CATG 4 cut(s) 506, 518, 992, 1061
HincII GTYRAC 1 cut(s) 510
HindII GTYRAC 1 cut(s) 510
HindIII AAGCTT 3 cut(s) 243, 669, 919
HinfI GANTC 5 cut(s) 354, 511, 518, 943, 959
HpaII CCGG 3 cut(s) 37, 254, 522
HphI GGTGA 1 cut(s) 769
Hpy166II GTNNAC 3 cut(s) 510, 777, 841
Hpy188I TCNGA 6 cut(s) 311, 721, 733, 748, 848, 926
Hpy188III TCNNGA 5 cut(s) 431, 515, 578, 881, 940
Hpy8I GTNNAC 3 cut(s) 510, 777, 841
HpyCH4III ACNGT 1 cut(s) 350
HpyCH4V TGCA 4 cut(s) 78, 219, 549, 558
HpyF10VI GCNNNNNNNGC 6 cut(s) 176, 190, 193, 216, 555, 1051
HpyF3I CTNAG 4 cut(s) 50, 233, 484, 730
Hsp92II CATG 4 cut(s) 506, 518, 992, 1061
Kzo9I GATC 2 cut(s) 126, 714
LmnI GCTCC 4 cut(s) 39, 256, 478, 1051
Lsp1109I GCAGC 2 cut(s) 171, 180
LweI GCATC 2 cut(s) 9, 325
MaeI CTAG 2 cut(s) 23, 680
MaeIII GTNAC 2 cut(s) 395, 409
MalI GATC 2 cut(s) 128, 716
MboI GATC 2 cut(s) 126, 714
MflI RGATCY 1 cut(s) 714
MhlI GDGCHC 3 cut(s) 452, 483, 689
MluCI AATT 4 cut(s) 66, 604, 639, 768
MlyI GAGTC 2 cut(s) 363, 505
MmeI TCCRAC 4 cut(s) 334, 456, 811, 913
MnlI CCTC 5 cut(s) 141, 374, 528, 739, 1067
MseI TTAA 2 cut(s) 530, 638
MspA1I CMGCKG 1 cut(s) 317
MspI CCGG 3 cut(s) 37, 254, 522
MspR9I CCNGG 4 cut(s) 402, 523, 712, 912
MvaI CCWGG 3 cut(s) 402, 712, 912
MwoI GCNNNNNNNGC 6 cut(s) 176, 190, 193, 216, 555, 1051
NciI CCSGG 1 cut(s) 523
NdeI CATATG 1 cut(s) 949
NdeII GATC 2 cut(s) 126, 714
NlaIII CATG 4 cut(s) 506, 518, 992, 1061
NlaIV GGNNCC 2 cut(s) 252, 480
NmeAIII GCCGAG 1 cut(s) 155
NmuCI GTSAC 1 cut(s) 395
PagI TCATGA 1 cut(s) 514
PaqCI CACCTGC 1 cut(s) 790
PcsI WCGNNNNNNNCGW 1 cut(s) 363
PfeI GAWTC 3 cut(s) 518, 943, 959
PflMI CCANNNNNTGG 2 cut(s) 442, 1048
PfoI TCCNGGA 1 cut(s) 710
PkrI GCNGC 4 cut(s) 186, 195, 324, 703
PleI GAGTC 2 cut(s) 362, 505
PpsI GAGTC 2 cut(s) 362, 505
Psp124BI GAGCTC 1 cut(s) 452
Psp6I CCWGG 3 cut(s) 400, 710, 910
PspGI CCWGG 3 cut(s) 400, 710, 910
PspN4I GGNNCC 2 cut(s) 252, 480
PspPI GGNCC 1 cut(s) 57
PsrI GAACNNNNNNTAC 2 cut(s) 869, 901
PsuI RGATCY 1 cut(s) 714
PvuII CAGCTG 1 cut(s) 317
RsaI GTAC 1 cut(s) 664
RsaNI GTAC 1 cut(s) 663
SacI GAGCTC 1 cut(s) 452
SaqAI TTAA 2 cut(s) 530, 638
SatI GCNGC 4 cut(s) 185, 194, 323, 702
Sau3AI GATC 2 cut(s) 126, 714
Sau96I GGNCC 1 cut(s) 57
SchI GAGTC 2 cut(s) 363, 505
ScrFI CCNGG 4 cut(s) 402, 523, 712, 912
SduI GDGCHC 3 cut(s) 452, 483, 689
SfaNI GCATC 2 cut(s) 9, 325
SfcI CTRYAG 1 cut(s) 379
SinI GGWCC 1 cut(s) 57
SmlI CTYRAG 1 cut(s) 459
SmoI CTYRAG 1 cut(s) 459
Sse9I AATT 4 cut(s) 66, 604, 639, 768
SsiI CCGC 4 cut(s) 144, 210, 323, 701
SspI AATATT 2 cut(s) 274, 931
SspMI CTAG 2 cut(s) 23, 680
SstI GAGCTC 1 cut(s) 452
StyD4I CCNGG 4 cut(s) 400, 521, 710, 910
TaaI ACNGT 1 cut(s) 350
TaqII GACCGA 1 cut(s) 45
TasI AATT 4 cut(s) 66, 604, 639, 768
TauI GCSGC 2 cut(s) 325, 704
TfiI GAWTC 3 cut(s) 518, 943, 959
Tru1I TTAA 2 cut(s) 530, 638
Tru9I TTAA 2 cut(s) 530, 638
TseFI GTSAC 1 cut(s) 395
TseI GCWGC 2 cut(s) 184, 193
Tsp45I GTSAC 1 cut(s) 395
TspDTI ATGAA 4 cut(s) 17, 271, 870, 1005
TspGWI ACGGA 1 cut(s) 112
Van91I CCANNNNNTGG 2 cut(s) 442, 1048
VpaK11BI GGWCC 1 cut(s) 57
XagI CCTNNNNNAGG 2 cut(s) 909, 1071
XspI CTAG 2 cut(s) 23, 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.