RLG00000035701

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0006397
Physical Location & Seq
Forward (+)
70506713 .. 70507773
1061 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035701

Sequence Viewer

Length: 312 bp
ATGGGTATTGTTAATGGCAGTATCATAAAAAGTGACCCTGGCATTGTTACAAATGGGTCTGCCTCTTTAGACCAACCTATGGGGAGCTCAGCTTCTCAAGTTGATAATCATGATGAGTTGGAACTCTTAGCAATTGATATTGAAACCTGCAAAGCATGCATACAGGGTCTTAACCATCATTGTCCTGCTTTGGGAAATTGTATAGGCCAAAATAATCATCCCCTTTTCCTAATTGTTATGTTTGGATTTATCAGTACCGAAGCTTCTTATCTAGTGTGCTCATCACTCTTCCAAATCCGAGATCTTAGATAG

Protein Analysis

104

Amino Acids

11.02

Weight (kDa)

4.79

Isoelectric Point (pI)

18.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 48 - 94 4.3e-12 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 155
AccB7I CCANNNNNTGG 1 cut(s) 79
AfaI GTAC 1 cut(s) 256
AfiI CCNNNNNNNGG 2 cut(s) 79, 191
AgsI TTSAA 1 cut(s) 143
AjnI CCWGG 1 cut(s) 37
AluBI AGCT 3 cut(s) 87, 92, 263
AluI AGCT 3 cut(s) 87, 92, 263
Alw21I GWGCWC 2 cut(s) 89, 281
AoxI GGCC 1 cut(s) 205
BanII GRGCYC 1 cut(s) 89
BarI GAAGNNNNNNTAC 2 cut(s) 247, 279
Bbv12I GWGCWC 2 cut(s) 89, 281
BccI CCATC 1 cut(s) 183
BciT130I CCWGG 1 cut(s) 39
BfaI CTAG 1 cut(s) 272
BfuAI ACCTGC 1 cut(s) 155
BglII AGATCT 1 cut(s) 301
BlpI GCTNAGC 1 cut(s) 88
Bme1390I CCNGG 1 cut(s) 39
BmrFI CCNGG 1 cut(s) 39
Bpu1102I GCTNAGC 1 cut(s) 88
BpuEI CTTGAG 1 cut(s) 81
BsaJI CCNNGG 1 cut(s) 37
Bsc4I CCNNNNNNNGG 2 cut(s) 79, 191
BseBI CCWGG 1 cut(s) 39
BseDI CCNNGG 1 cut(s) 37
BseGI GGATG 1 cut(s) 217
BseLI CCNNNNNNNGG 2 cut(s) 79, 191
BseMII CTCAG 1 cut(s) 102
BshFI GGCC 1 cut(s) 207
BsiHKAI GWGCWC 2 cut(s) 89, 281
BslI CCNNNNNNNGG 2 cut(s) 79, 191
BsnI GGCC 1 cut(s) 207
Bsp1286I GDGCHC 2 cut(s) 89, 281
Bsp143I GATC 1 cut(s) 301
Bsp1720I GCTNAGC 1 cut(s) 88
BspANI GGCC 1 cut(s) 207
BspCNI CTCAG 1 cut(s) 101
BspHI TCATGA 1 cut(s) 109
BspMI ACCTGC 1 cut(s) 155
BssECI CCNNGG 1 cut(s) 37
BssMI GATC 1 cut(s) 301
Bst2UI CCWGG 1 cut(s) 39
Bst6I CTCTTC 1 cut(s) 293
BstAPI GCANNNNNTGC 1 cut(s) 156
BstC8I GCNNGC 1 cut(s) 157
BstDEI CTNAG 3 cut(s) 88, 127, 305
BstF5I GGATG 1 cut(s) 217
BstKTI GATC 1 cut(s) 304
BstMBI GATC 1 cut(s) 301
BstMWI GCNNNNNNNGC 1 cut(s) 156
BstNI CCWGG 1 cut(s) 39
BstNSI RCATGY 1 cut(s) 159
BstSCI CCNGG 1 cut(s) 37
BstX2I RGATCY 1 cut(s) 301
BstYI RGATCY 1 cut(s) 301
BsuRI GGCC 1 cut(s) 207
BtsCI GGATG 1 cut(s) 217
BveI ACCTGC 1 cut(s) 155
Cac8I GCNNGC 1 cut(s) 157
CciI TCATGA 1 cut(s) 109
Csp6I GTAC 1 cut(s) 255
CviAII CATG 2 cut(s) 110, 156
CviJI RGCY 4 cut(s) 87, 92, 207, 263
CviKI_1 RGCY 4 cut(s) 87, 92, 207, 263
CviQI GTAC 1 cut(s) 255
DdeI CTNAG 3 cut(s) 88, 127, 305
DpnI GATC 1 cut(s) 303
DpnII GATC 1 cut(s) 301
Eam1104I CTCTTC 1 cut(s) 293
EarI CTCTTC 1 cut(s) 293
Ecl136II GAGCTC 1 cut(s) 87
Eco24I GRGCYC 1 cut(s) 89
Eco53kI GAGCTC 1 cut(s) 87
EcoICRI GAGCTC 1 cut(s) 87
EcoRII CCWGG 1 cut(s) 37
EcoT22I ATGCAT 1 cut(s) 161
EcoT38I GRGCYC 1 cut(s) 89
FaeI CATG 2 cut(s) 113, 159
FaiI YATR 7 cut(s) 26, 80, 111, 157, 161, 203, 239
FatI CATG 2 cut(s) 109, 155
FokI GGATG 1 cut(s) 204
FriOI GRGCYC 1 cut(s) 89
FspBI CTAG 1 cut(s) 272
HaeIII GGCC 1 cut(s) 207
Hin1II CATG 2 cut(s) 113, 159
HindIII AAGCTT 1 cut(s) 261
Hpy188I TCNGA 1 cut(s) 299
Hpy188III TCNNGA 1 cut(s) 110
HpyCH4V TGCA 2 cut(s) 150, 159
HpyF10VI GCNNNNNNNGC 1 cut(s) 156
HpyF3I CTNAG 3 cut(s) 88, 127, 305
Hsp92II CATG 2 cut(s) 113, 159
Kzo9I GATC 1 cut(s) 301
LmnI GCTCC 1 cut(s) 84
LpnPI CCDG 5 cut(s) 24, 51, 149, 160, 198
MaeI CTAG 1 cut(s) 272
MaeIII GTNAC 2 cut(s) 32, 46
MalI GATC 1 cut(s) 303
MboI GATC 1 cut(s) 301
MboII GAAGA 1 cut(s) 280
MfeI CAATTG 1 cut(s) 132
MflI RGATCY 1 cut(s) 301
MhlI GDGCHC 2 cut(s) 89, 281
MluCI AATT 3 cut(s) 132, 196, 231
MmeI TCCRAC 1 cut(s) 99
MnlI CCTC 1 cut(s) 73
Mph1103I ATGCAT 1 cut(s) 161
MseI TTAA 2 cut(s) 12, 171
MspR9I CCNGG 1 cut(s) 39
MunI CAATTG 1 cut(s) 132
MvaI CCWGG 1 cut(s) 39
MwoI GCNNNNNNNGC 1 cut(s) 156
NdeII GATC 1 cut(s) 301
NlaIII CATG 2 cut(s) 113, 159
NmuCI GTSAC 1 cut(s) 32
NsiI ATGCAT 1 cut(s) 161
NspI RCATGY 1 cut(s) 159
PaeI GCATGC 1 cut(s) 159
PagI TCATGA 1 cut(s) 109
PflMI CCANNNNNTGG 1 cut(s) 79
Psp124BI GAGCTC 1 cut(s) 89
Psp6I CCWGG 1 cut(s) 37
PspGI CCWGG 1 cut(s) 37
PsuI RGATCY 1 cut(s) 301
RsaI GTAC 1 cut(s) 256
RsaNI GTAC 1 cut(s) 255
SacI GAGCTC 1 cut(s) 89
SaqAI TTAA 2 cut(s) 12, 171
Sau3AI GATC 1 cut(s) 301
ScrFI CCNGG 1 cut(s) 39
SduI GDGCHC 2 cut(s) 89, 281
SetI ASST 5 cut(s) 79, 89, 94, 149, 265
SgeI CNNG 9 cut(s) 50, 51, 110, 122, 159, 168, 176, 197, 284
SmlI CTYRAG 1 cut(s) 96
SmoI CTYRAG 1 cut(s) 96
SphI GCATGC 1 cut(s) 159
Sse9I AATT 3 cut(s) 132, 196, 231
SspMI CTAG 1 cut(s) 272
SstI GAGCTC 1 cut(s) 89
StyD4I CCNGG 1 cut(s) 37
TasI AATT 3 cut(s) 132, 196, 231
Tru1I TTAA 2 cut(s) 12, 171
Tru9I TTAA 2 cut(s) 12, 171
TseFI GTSAC 1 cut(s) 32
Tsp45I GTSAC 1 cut(s) 32
Van91I CCANNNNNTGG 1 cut(s) 79
XceI RCATGY 1 cut(s) 159
XspI CTAG 1 cut(s) 272
Zsp2I ATGCAT 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.