RchiOBHm_Chr5g0064071

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0006397
Physical Location & Seq
Forward (+)
69859514 .. 69862642
3129 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34014

Sequence Viewer

Length: 1002 bp
ATGAAAATCCCAAAAGCGATGCTTGAAACACAGAACCGGAGCAATCCCCTAAGTCGGTCCAAGCTAATTGGCCGTTGCATAGTCTCCTGTATCTTCGTCTTTCTCACTCACTTGGCTCTCTCTGTGATCCCTCGCTTCTTCTCCGCTTTCTCCTTTCTAACCCAACTCGCTCTCTCGGCTCTGCTGCTTCTGCTGCTCCTGGGTTTTGGCGGATGGTGTAGAAGAACGCTTCTTAGAGCAAAAGCTTCGGCTCCGGCTTTCGTCTTCTTCAATATTCTCTTCATCTGGGGGTTTTATTTCTCTGTTATCCGACCAGCTGTGCCGCAACTACACGATGTCGTTTTCAACTGTGGAGTTGTGTTCCTGTTTATTGGTCTCTATAGTATTATAACAAGTGATCCTGGCATTGTTACAAATGGGTCTGCCTCTCCAGACCAGCCTATGGAGAGCTCACTTTCTCAAGTTGATAAGGAGATGGAGCTCTTAGCAAGTGGTTTAGGCCATGAATCAACTCATGATTCAGGTTTGTTGATGAGGGTTAGATATTGCAAAACCTGCAAGGCATACATAAAGGGTCTTGACCATCATTGTCCTGCTTTTGGAAATTGTATAGGCCAAAATAATCATCCCCTTTTCTTAATTCTTCTGTTTGGATTTATCAGTACTGAAGCTTCTTATCTAGTGTGCTCATCAGTCTTTGCGGCCAAATCCAGGATCTTGGATAGACCCTCCGAGCTTACTCTTTCTGAAAGTTTAGCTGTTAGCACAATTCTGTTCACCATTCTCCAACTGCTATGGCAGGTGGTCTTTTTGATATGGCACATATATTGTTTATGCGTGAACATCAGAACTGATGAGTGGATAAAATGGAAGAAGTATCCAGAGTTCCAACTTGTTATTCCACCTGAACCAGGACAAAGCTTCAGAAATATTAGGTTCTGGAATCCATATGACAAAGGCATGGTACAGAATGTGAAGGAGTTTCTAGCCATCCAGCATTAA

Protein Analysis

333

Amino Acids

37.67

Weight (kDa)

8.95

Isoelectric Point (pI)

40.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 178 - 291 2e-20 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 389
AarI CACCTGC 1 cut(s) 790
Acc36I ACCTGC 2 cut(s) 563, 790
AccB7I CCANNNNNTGG 1 cut(s) 442
AciI CCGC 4 cut(s) 144, 210, 323, 701
AclWI GGATC 3 cut(s) 121, 392, 722
AcoI YGGCCR 2 cut(s) 70, 702
AcuI CTGAAG 2 cut(s) 687, 907
AfaI GTAC 2 cut(s) 664, 966
AfiI CCNNNNNNNGG 5 cut(s) 54, 442, 599, 711, 911
AgsI TTSAA 3 cut(s) 26, 271, 346
AjnI CCWGG 4 cut(s) 198, 400, 710, 910
AjuI GAANNNNNNNTTGG 2 cut(s) 882, 914
AluBI AGCT 9 cut(s) 64, 245, 317, 450, 481, 671, 736, 758, 921
AluI AGCT 9 cut(s) 64, 245, 317, 450, 481, 671, 736, 758, 921
Alw21I GWGCWC 3 cut(s) 452, 483, 689
Alw26I GTCTC 2 cut(s) 88, 380
AlwI GGATC 3 cut(s) 121, 392, 722
AoxI GGCC 4 cut(s) 70, 499, 613, 702
ApeKI GCWGC 2 cut(s) 184, 193
AspS9I GGNCC 1 cut(s) 57
AsuHPI GGTGA 1 cut(s) 769
AvaII GGWCC 1 cut(s) 57
BanII GRGCYC 2 cut(s) 452, 483
BarI GAAGNNNNNNTAC 2 cut(s) 655, 687
BbsI GAAGAC 1 cut(s) 256
Bbv12I GWGCWC 3 cut(s) 452, 483, 689
BbvI GCAGC 2 cut(s) 171, 180
BccI CCATC 4 cut(s) 207, 469, 591, 998
BceAI ACGGC 1 cut(s) 57
BcgI CGANNNNNNTGC 2 cut(s) 228, 262
BciT130I CCWGG 4 cut(s) 200, 402, 712, 912
BciVI GTATCC 1 cut(s) 888
BcoDI GTCTC 2 cut(s) 88, 380
BfaI CTAG 2 cut(s) 680, 986
BfmI CTRYAG 1 cut(s) 379
BfuAI ACCTGC 2 cut(s) 563, 790
BfuI GTATCC 1 cut(s) 888
BisI GCNGC 4 cut(s) 185, 194, 323, 702
BlsI GCNGC 4 cut(s) 186, 195, 324, 703
BmcAI AGTACT 1 cut(s) 664
Bme1390I CCNGG 4 cut(s) 200, 402, 712, 912
Bme18I GGWCC 1 cut(s) 57
BmgT120I GGNCC 1 cut(s) 57
BmiI GGNNCC 1 cut(s) 252
BmrFI CCNGG 4 cut(s) 200, 402, 712, 912
BmsI GCATC 1 cut(s) 9
BpiI GAAGAC 1 cut(s) 256
BpmI CTGGAG 1 cut(s) 414
BpuEI CTTGAG 1 cut(s) 444
BsaI GGTCTC 1 cut(s) 380
BsaJI CCNNGG 1 cut(s) 199
BsaWI WCCGGW 1 cut(s) 36
Bsc4I CCNNNNNNNGG 5 cut(s) 54, 442, 599, 711, 911
BseBI CCWGG 4 cut(s) 200, 402, 712, 912
BseDI CCNNGG 1 cut(s) 199
BseGI GGATG 3 cut(s) 218, 625, 990
BseLI CCNNNNNNNGG 5 cut(s) 54, 442, 599, 711, 911
BseXI GCAGC 2 cut(s) 171, 180
BshFI GGCC 4 cut(s) 72, 501, 615, 704
BsiHKAI GWGCWC 3 cut(s) 452, 483, 689
BsiSI CCGG 2 cut(s) 37, 254
BslI CCNNNNNNNGG 5 cut(s) 54, 442, 599, 711, 911
BsmAI GTCTC 2 cut(s) 88, 380
BsnI GGCC 4 cut(s) 72, 501, 615, 704
Bso31I GGTCTC 1 cut(s) 380
Bsp1286I GDGCHC 3 cut(s) 452, 483, 689
Bsp143I GATC 3 cut(s) 126, 397, 714
BspACI CCGC 4 cut(s) 144, 210, 323, 701
BspANI GGCC 4 cut(s) 72, 501, 615, 704
BspHI TCATGA 1 cut(s) 514
BspLI GGNNCC 1 cut(s) 252
BspMI ACCTGC 2 cut(s) 563, 790
BspPI GGATC 3 cut(s) 121, 392, 722
BspTNI GGTCTC 1 cut(s) 380
BssECI CCNNGG 1 cut(s) 199
BssMI GATC 3 cut(s) 126, 397, 714
Bst2UI CCWGG 4 cut(s) 200, 402, 712, 912
Bst4CI ACNGT 1 cut(s) 350
Bst6I CTCTTC 1 cut(s) 284
BstAPI GCANNNNNTGC 1 cut(s) 555
BstDEI CTNAG 3 cut(s) 50, 233, 484
BstENI CCTNNNNNAGG 1 cut(s) 909
BstF5I GGATG 3 cut(s) 218, 625, 990
BstKTI GATC 3 cut(s) 129, 400, 717
BstMAI GTCTC 2 cut(s) 88, 380
BstMBI GATC 3 cut(s) 126, 397, 714
BstMWI GCNNNNNNNGC 4 cut(s) 176, 190, 193, 555
BstNI CCWGG 4 cut(s) 200, 402, 712, 912
BstSCI CCNGG 4 cut(s) 198, 400, 710, 910
BstSFI CTRYAG 1 cut(s) 379
BstV1I GCAGC 2 cut(s) 171, 180
BstV2I GAAGAC 1 cut(s) 256
BstX2I RGATCY 1 cut(s) 714
BstXI CCANNNNNNTGG 1 cut(s) 718
BstYI RGATCY 1 cut(s) 714
BsuI GTATCC 1 cut(s) 888
BsuRI GGCC 4 cut(s) 72, 501, 615, 704
BtgZI GCGATG 1 cut(s) 32
BtsCI GGATG 3 cut(s) 218, 625, 990
BveI ACCTGC 2 cut(s) 563, 790
CciI TCATGA 1 cut(s) 514
Cfr13I GGNCC 1 cut(s) 57
Csp6I GTAC 2 cut(s) 663, 965
CviAII CATG 3 cut(s) 503, 515, 961
CviQI GTAC 2 cut(s) 663, 965
DdeI CTNAG 3 cut(s) 50, 233, 484
DpnI GATC 3 cut(s) 128, 399, 716
DpnII GATC 3 cut(s) 126, 397, 714
EaeI YGGCCR 2 cut(s) 70, 702
Eam1104I CTCTTC 1 cut(s) 284
EarI CTCTTC 1 cut(s) 284
EciI GGCGGA 1 cut(s) 225
Ecl136II GAGCTC 2 cut(s) 450, 481
Eco24I GRGCYC 2 cut(s) 452, 483
Eco31I GGTCTC 1 cut(s) 380
Eco47I GGWCC 1 cut(s) 57
Eco53kI GAGCTC 2 cut(s) 450, 481
Eco57I CTGAAG 2 cut(s) 687, 907
EcoICRI GAGCTC 2 cut(s) 450, 481
EcoNI CCTNNNNNAGG 1 cut(s) 909
EcoRII CCWGG 4 cut(s) 198, 400, 710, 910
EcoT38I GRGCYC 2 cut(s) 452, 483
FaeI CATG 3 cut(s) 506, 518, 964
FalI AAGNNNNNCTT 1 cut(s) 38
FatI CATG 3 cut(s) 502, 514, 960
FauNDI CATATG 1 cut(s) 949
Fnu4HI GCNGC 4 cut(s) 185, 194, 323, 702
FokI GGATG 3 cut(s) 225, 612, 977
FriOI GRGCYC 2 cut(s) 452, 483
Fsp4HI GCNGC 4 cut(s) 185, 194, 323, 702
FspBI CTAG 2 cut(s) 680, 986
GluI GCNGC 4 cut(s) 185, 194, 323, 702
GsuI CTGGAG 1 cut(s) 414
HaeIII GGCC 4 cut(s) 72, 501, 615, 704
HapII CCGG 2 cut(s) 37, 254
Hin1II CATG 3 cut(s) 506, 518, 964
HindIII AAGCTT 3 cut(s) 243, 669, 919
HinfI GANTC 3 cut(s) 506, 518, 943
HpaII CCGG 2 cut(s) 37, 254
HphI GGTGA 1 cut(s) 769
Hpy166II GTNNAC 2 cut(s) 777, 841
Hpy188I TCNGA 5 cut(s) 311, 733, 748, 848, 926
Hpy188III TCNNGA 5 cut(s) 431, 515, 578, 881, 940
Hpy8I GTNNAC 2 cut(s) 777, 841
HpyAV CCTTC 1 cut(s) 970
HpyCH4III ACNGT 1 cut(s) 350
HpyCH4V TGCA 3 cut(s) 78, 549, 558
HpyF10VI GCNNNNNNNGC 4 cut(s) 176, 190, 193, 555
HpyF3I CTNAG 3 cut(s) 50, 233, 484
Hsp92II CATG 3 cut(s) 506, 518, 964
Kzo9I GATC 3 cut(s) 126, 397, 714
LmnI GCTCC 4 cut(s) 39, 201, 256, 478
Lsp1109I GCAGC 2 cut(s) 171, 180
LweI GCATC 1 cut(s) 9
MaeI CTAG 2 cut(s) 680, 986
MaeIII GTNAC 1 cut(s) 409
MalI GATC 3 cut(s) 128, 399, 716
MboI GATC 3 cut(s) 126, 397, 714
MboII GAAGA 8 cut(s) 85, 130, 234, 256, 259, 271, 635, 883
MflI RGATCY 1 cut(s) 714
MhlI GDGCHC 3 cut(s) 452, 483, 689
MluCI AATT 4 cut(s) 66, 604, 639, 768
MmeI TCCRAC 3 cut(s) 334, 811, 913
MnlI CCTC 4 cut(s) 141, 436, 528, 739
MseI TTAA 2 cut(s) 638, 1000
MspA1I CMGCKG 1 cut(s) 317
MspI CCGG 2 cut(s) 37, 254
MspR9I CCNGG 4 cut(s) 200, 402, 712, 912
MvaI CCWGG 4 cut(s) 200, 402, 712, 912
MwoI GCNNNNNNNGC 4 cut(s) 176, 190, 193, 555
NdeI CATATG 1 cut(s) 949
NdeII GATC 3 cut(s) 126, 397, 714
NlaIII CATG 3 cut(s) 506, 518, 964
NlaIV GGNNCC 1 cut(s) 252
NmeAIII GCCGAG 1 cut(s) 155
PagI TCATGA 1 cut(s) 514
PaqCI CACCTGC 1 cut(s) 790
PfeI GAWTC 3 cut(s) 506, 518, 943
PflMI CCANNNNNTGG 1 cut(s) 442
PfoI TCCNGGA 1 cut(s) 710
PkrI GCNGC 4 cut(s) 186, 195, 324, 703
PsiI TTATAA 1 cut(s) 389
Psp124BI GAGCTC 2 cut(s) 452, 483
Psp6I CCWGG 4 cut(s) 198, 400, 710, 910
PspGI CCWGG 4 cut(s) 198, 400, 710, 910
PspN4I GGNNCC 1 cut(s) 252
PspPI GGNCC 1 cut(s) 57
PsrI GAACNNNNNNTAC 2 cut(s) 869, 901
PsuI RGATCY 1 cut(s) 714
PvuII CAGCTG 1 cut(s) 317
RsaI GTAC 2 cut(s) 664, 966
RsaNI GTAC 2 cut(s) 663, 965
SacI GAGCTC 2 cut(s) 452, 483
SaqAI TTAA 2 cut(s) 638, 1000
SatI GCNGC 4 cut(s) 185, 194, 323, 702
Sau3AI GATC 3 cut(s) 126, 397, 714
Sau96I GGNCC 1 cut(s) 57
ScaI AGTACT 1 cut(s) 664
ScrFI CCNGG 4 cut(s) 200, 402, 712, 912
SduI GDGCHC 3 cut(s) 452, 483, 689
SfaNI GCATC 1 cut(s) 9
SfcI CTRYAG 1 cut(s) 379
SinI GGWCC 1 cut(s) 57
SmlI CTYRAG 1 cut(s) 459
SmoI CTYRAG 1 cut(s) 459
Sse9I AATT 4 cut(s) 66, 604, 639, 768
SsiI CCGC 4 cut(s) 144, 210, 323, 701
SspI AATATT 2 cut(s) 274, 931
SspMI CTAG 2 cut(s) 680, 986
SstI GAGCTC 2 cut(s) 452, 483
StyD4I CCNGG 4 cut(s) 198, 400, 710, 910
TaaI ACNGT 1 cut(s) 350
TaqII GACCGA 1 cut(s) 45
TasI AATT 4 cut(s) 66, 604, 639, 768
TatI WGTACW 1 cut(s) 662
TauI GCSGC 2 cut(s) 325, 704
TfiI GAWTC 3 cut(s) 506, 518, 943
Tru1I TTAA 2 cut(s) 638, 1000
Tru9I TTAA 2 cut(s) 638, 1000
TseI GCWGC 2 cut(s) 184, 193
TspDTI ATGAA 3 cut(s) 17, 271, 519
Van91I CCANNNNNTGG 1 cut(s) 442
VpaK11BI GGWCC 1 cut(s) 57
XagI CCTNNNNNAGG 1 cut(s) 909
XspI CTAG 2 cut(s) 680, 986
ZrmI AGTACT 1 cut(s) 664
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.